+ set -o Current option settings allexport on bgnice off braceexpand on clobber on emacs off errexit off exec on glob on globstar off gmacs off histexpand off ignoreeof off interactive off keyword off letoctal off log on login_shell off markdirs off monitor off multiline off notify off pipefail off privileged off rc off restricted off showme off trackall on unset off verbose off vi off viraw on xtrace on + INITIAL_DATE=2015061000 + export INITIAL_DATE + FIRST_FILTER_DATE=2015061001 + export FIRST_FILTER_DATE + FIRST_DART_INFLATE_DATE=2015061001 + export FIRST_DART_INFLATE_DATE + FIRST_EMISS_INV_DATE=2015061001 + export FIRST_EMISS_INV_DATE + CYCLE_STR_DATE=2015061002 + export CYCLE_STR_DATE + CYCLE_END_DATE=2015061300 + export CYCLE_END_DATE + CYCLE_DATE=2015061002 + export CYCLE_DATE + NL_FAC_OBS_ERROR_MOPITT=1.00 + export NL_FAC_OBS_ERROR_MOPITT + NL_FAC_OBS_ERROR_IASI=1.00 + export NL_FAC_OBS_ERROR_IASI + RETRIEVAL_TYPE_MOPITT=RETR + export RETRIEVAL_TYPE_MOPITT + RETRIEVAL_TYPE_IASI=RAWR + export RETRIEVAL_TYPE_IASI + PERT_CHEM_GENER=true + export PERT_CHEM_GENER + USE_LOG=false + export USE_LOG + [[ false == true ]] + CO_MIN=1.e-4 + export CO_MIN + CO_MAX=NULL + export CO_MAX + O3_MIN=0. + export O3_MIN + O3_MAX=NULL + export O3_MAX + USE_LOG_CO_LOGIC=.false. + export USE_LOG_CO_LOGIC + USE_LOG_O3_LOGIC=.false. + export USE_LOG_O3_LOGIC + NL_USE_CPSR_CO_TRUNC=.false. + export NL_USE_CPSR_CO_TRUNC + NL_CPSR_CO_TRUNC_LIM=4 + export NL_CPSR_CO_TRUNC_LIM + NL_USE_CPSR_O3_TRUNC=.false. + export NL_USE_CPSR_O3_TRUNC + NL_CPSR_O3_TRUNC_LIM=4 + export NL_CPSR_O3_TRUNC_LIM + NL_AIRNOW_O3_VLOC=0 + export NL_AIRNOW_O3_VLOC + NL_TOLNET_O3_VLOC=0 + export NL_TOLNET_O3_VLOC + VARLOC=.true. + export VARLOC + INDEP_CHEM_ASIM=.false. + export INDEP_CHEM_ASIM + ADD_EMISS=.false. + export ADD_EMISS + EMISS_DAMP_CYCLE=0.5 + export EMISS_DAMP_CYCLE + EMISS_DAMP_INTRA_CYCLE=0.5 + export EMISS_DAMP_INTRA_CYCLE + BAND_ISO_VAL_CO=.09 + RUN_FINE_SCALE=false + export RUN_FINE_SCALE + RUN_FINE_SCALE_RESTART=false + export RUN_FINE_SCALE_RESTART + RESTART_DATE=2014072312 + export RESTART_DATE + [[ false == true ]] + RUN_SPECIAL_FORECAST=false + export RUN_SPECIAL_FORECAST + NUM_SPECIAL_FORECAST=1 + export NUM_SPECIAL_FORECAST + SPECIAL_FORECAST_FAC=1. + export SPECIAL_FORECAST_FAC + SPECIAL_FORECAST_FAC=1./2. + export SPECIAL_FORECAST_FAC + SPECIAL_FORECAST_FAC=2./3. + export SPECIAL_FORECAST_FAC + SPECIAL_FORECAST_MEM[1]=5 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[2]=18 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[3]=22 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[4]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[5]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[6]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[7]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[8]=20 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[9]=21 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[10]=19 + export SPECIAL_FORECAST_MEM + PROJ_NUMBER=P93300612 + export PROJ_NUMBER + GENERAL_JOB_CLASS=normal+ + export GENERAL_JOB_CLASS + GENERAL_TIME_LIMIT=01:40:00 + export GENERAL_TIME_LIMIT + GENERAL_NODES=1 + export GENERAL_NODES + GENERAL_TASKS=1 + export GENERAL_TASKS + WRFDA_JOB_CLASS=normal+ + export WRFDA_JOB_CLASS + WRFDA_TIME_LIMIT=01:05:00 + export WRFDA_TIME_LIMIT + WRFDA_NODES=1 + export WRFDA_NODES + WRFDA_TASKS=1 + export WRFDA_TASKS + SINGLE_JOB_CLASS=normal+ + export SINGLE_JOB_CLASS + SINGLE_TIME_LIMIT=01:05:00 + export SINGLE_TIME_LIMIT + SINGLE_NODES=1 + export SINGLE_NODES + SINGLE_TASKS=1 + export SINGLE_TASKS + BIO_JOB_CLASS=normal+ + export BIO_JOB_CLASS + BIO_TIME_LIMIT=01:20:00 + export BIO_TIME_LIMIT + BIO_NODES=1 + export BIO_NODES + BIO_TASKS=1 + export BIO_TASKS + FILTER_JOB_CLASS=normal+ + export FILTER_JOB_CLASS + FILTER_TIME_LIMIT=03:30:00 + export FILTER_TIME_LIMIT + FILTER_NODES=2-4 + export FILTER_NODES + FILTER_TASKS=48 + export FILTER_TASKS + WRFCHEM_JOB_CLASS=medium+ + export WRFCHEM_JOB_CLASS + WRFCHEM_TIME_LIMIT=16:00:00 + export WRFCHEM_TIME_LIMIT + WRFCHEM_NODES=2-4 + export WRFCHEM_NODES + WRFCHEM_TASKS=48 + export WRFCHEM_TASKS + RUN_INTERPOLATE=false + export RUN_INTERPOLATE + CYCLE_PERIOD=1 + export CYCLE_PERIOD + FCST_PERIOD=1 + export FCST_PERIOD + ASIM_WINDOW=30m + export ASIM_WINDOW + MET_INTERVAL_HR=1 + export MET_INTERVAL_HR + INTERVAL_SECONDS=3600 + export INTERVAL_SECONDS + HISTORY_INTERVAL_HR=1 + export HISTORY_INTERVAL_HR + (( HISTORY_INTERVAL_MIN = 1 * 60 )) + NL_DEBUG_LEVEL=200 + export NL_DEBUG_LEVEL + WPS_VER=wrfchem3_6_1_m_debug/WPS + export WPS_VER + WPS_GEOG_VER=GEOG_DATA + export WPS_GEOG_VER + WRFDA_VER=wrfchem3_6_1_m_debug/WRFDA + export WRFDA_VER + WRF_VER=wrf3_6_1_m_debug/WRFV3 + export WRF_VER + WRFCHEM_VER=wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_VER + DART_VER=wrf-chem.r13172 + export DART_VER + SCRATCH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export SCRATCH_DIR + MODEL_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI + export MODEL_DIR + INPUT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export INPUT_DATA_DIR + SCRIPT_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + export SCRIPT_DIR + EXPERIMENT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export EXPERIMENT_DIR + RUN_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d + export RUN_DIR + WPS_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS + export WPS_DIR + WPS_GEOG_DIR=/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7 + export WPS_GEOG_DIR + WRFCHEM_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_DIR + WRFDA_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA + export WRFDA_DIR + DART_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172 + export DART_DIR + BUILD_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da + export BUILD_DIR + WRF_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3 + export WRF_DIR + HYBRID_SCRIPTS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts + export HYBRID_SCRIPTS_DIR + ADJUST_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_EMISS_INV + export ADJUST_EMISS_DIR + WES_COLDENS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS + export WES_COLDENS_DIR + MEGAN_BIO_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO + export MEGAN_BIO_DIR + FINN_FIRE_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE + export FINN_FIRE_DIR + EXPERIMENT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA + export EXPERIMENT_DATA_DIR + MOZBC_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts + export MOZBC_DATA_DIR + EXPERIMENT_STATIC_FILES=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files + export EXPERIMENT_STATIC_FILES + EXPERIMENT_WRFCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export EXPERIMENT_WRFCHEMI_DIR + EXPERIMENT_WRFFIRECHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions + export EXPERIMENT_WRFFIRECHEMI_DIR + EXPERIMENT_WRFBIOCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions + export EXPERIMENT_WRFBIOCHEMI_DIR + EXPERIMENT_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens + export EXPERIMENT_COLDENS_DIR + EXPERIMENT_PREPBUFR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data + export EXPERIMENT_PREPBUFR_DIR + EXPERIMENT_AIRNOW_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data + export EXPERIMENT_AIRNOW_DIR + EXPERIMENT_TOLNET_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data + export EXPERIMENT_TOLNET_DIR + EXPERIMENT_GFS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts + export EXPERIMENT_GFS_DIR + EXPERIMENT_DUST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/dust_fields + export EXPERIMENT_DUST_DIR + EXPERIMENT_HIST_IO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files + export EXPERIMENT_HIST_IO_DIR + VTABLE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables + export VTABLE_DIR + BE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run + export BE_DIR + PERT_CHEM_INPUT_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT + export PERT_CHEM_INPUT_DIR + PERT_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT + export PERT_CHEM_EMISS_DIR + RUN_BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_BAND_DEPTH + export RUN_BAND_DEPTH_DIR + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + RUN_GEOGRID=false + export RUN_GEOGRID + RUN_UNGRIB=false + export RUN_UNGRIB + RUN_METGRID=false + export RUN_METGRID + GEOGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/geogrid + export GEOGRID_DIR + UNGRIB_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/ungrib + export UNGRIB_DIR + METGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid + export METGRID_DIR + MAX_DOMAINS=03 + export MAX_DOMAINS + CR_DOMAIN=01 + export CR_DOMAIN + MR_DOMAIN=02 + export MR_DOMAIN + FR_DOMAIN=03 + export FR_DOMAIN + NNXP_CR=195 + export NNXP_CR + NNYP_CR=167 + export NNYP_CR + NNZP_CR=36 + export NNZP_CR + NNXP_MR=255 + export NNXP_MR + NNYP_MR=228 + export NNYP_MR + NNZP_MR=36 + export NNZP_MR + NNXP_FR=258 + export NNXP_FR + NNYP_FR=204 + export NNYP_FR + NNZP_FR=36 + export NNZP_FR + (( NNXP_STAG_CR=195+1 )) + (( NNYP_STAG_CR=167+1 )) + (( NNZP_STAG_CR=36+1 )) + (( NNXP_STAG_MR=255+1 )) + (( NNYP_STAG_MR=228+1 )) + (( NNZP_STAG_MR=36+1 )) + (( NNXP_STAG_FR=258+1 )) + (( NNYP_STAG_FR=204+1 )) + (( NNZP_STAG_FR=36+1 )) + ISTR_CR=1 + export ISTR_CR + JSTR_CR=1 + export JSTR_CR + ISTR_MR=80 + export ISTR_MR + JSTR_MR=45 + export JSTR_MR + ISTR_FR=150 + export ISTR_FR + JSTR_FR=55 + export JSTR_FR + DX_CR=27000 + export DX_CR + DX_MR=9000 + export DX_MR + DX_FR=3000 + export DX_FR + (( LBC_END=6 )) + LBC_FREQ=6 + export LBC_FREQ + LBC_START=0 + export LBC_START + START_DATE=2015061000 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061300 6 + 2> /dev/null + END_DATE=2015061306 + export END_DATE + echo 2015061000 + cut -c1-4 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061000 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061000 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061000 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061000 + START_HOUR=00 + export START_HOUR + START_FILE_DATE=2015-06-10_00:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061306 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061306 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061306 + END_DAY=13 + export END_DAY + cut -c9-10 + echo 2015061306 + END_HOUR=06 + export END_HOUR + END_FILE_DATE=2015-06-13_06:00:00 + export END_FILE_DATE + FG_TYPE=GFS + export FG_TYPE + GRIB_PART1=gfs.0p25. + export GRIB_PART1 + GRIB_PART2=.g2.tar + export GRIB_PART2 + SINGLE_FILE=false + export SINGLE_FILE + HOR_SCALE=1500 + export HOR_SCALE + VTABLE_TYPE=GFS + export VTABLE_TYPE + METGRID_TABLE_TYPE=ARW + export METGRID_TABLE_TYPE + NL_WRF_CORE=$'\'ARW\'' + export NL_WRF_CORE + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=00,00,00 + export NL_START_HOUR + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=13,13,13 + export NL_END_DAY + NL_END_HOUR=06,06,06 + export NL_END_HOUR + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_IO_FORM_GEOGRID=2 + export NL_IO_FORM_GEOGRID + NL_OPT_OUTPUT_FROM_GEOGRID_PATH=$'\'/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/geogrid\'' + export NL_OPT_OUTPUT_FROM_GEOGRID_PATH + NL_ACTIVE_GRID=.true.,.true.,.true. + export NL_ACTIVE_GRID + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_GEOG_DATA_RES=$'\'10s\',\'10s\',\'10s\'' + export NL_GEOG_DATA_RES + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_MAP_PROJ=$'\'lambert\'' + export NL_MAP_PROJ + NL_REF_LAT=42.83 + export NL_REF_LAT + NL_REF_LON=-92.03 + export NL_REF_LON + NL_STAND_LON=-98.0 + export NL_STAND_LON + NL_TRUELAT1=30.0 + export NL_TRUELAT1 + NL_TRUELAT2=60.0 + export NL_TRUELAT2 + NL_GEOG_DATA_PATH=$'\'/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7\'' + export NL_GEOG_DATA_PATH + NL_OPT_GEOGRID_TBL_PATH=$'\'/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid\'' + export NL_OPT_GEOGRID_TBL_PATH + NL_OUT_FORMAT=$'\'WPS\'' + export NL_OUT_FORMAT + NL_IO_FORM_METGRID=2 + export NL_IO_FORM_METGRID + [[ ! -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d + [[ false == true ]] + [[ false == true ]] + [[ false == true ]] + [[ 2015061002 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061002 + export DATE + cut -c1-4 + echo 2015061002 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061002 + YY=15 + export YY + cut -c5-6 + echo 2015061002 + MM=06 + export MM + cut -c7-8 + echo 2015061002 + DD=10 + export DD + cut -c9-10 + echo 2015061002 + HH=02 + export HH + DATE_SHORT=15061002 + export DATE_SHORT + FILE_DATE=2015-06-10_02:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -1 + 2> /dev/null + PAST_DATE=2015061001 + export PAST_DATE + cut -c1-4 + echo 2015061001 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061001 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061001 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061001 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061001 + PAST_HH=01 + export PAST_HH + PAST_FILE_DATE=2015-06-10_01:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + NEXT_DATE=2015061003 + export NEXT_DATE + cut -c1-4 + echo 2015061003 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061003 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061003 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061003 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061003 + NEXT_HH=03 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_03:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=02 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 02 + 0 )) + [[ 02 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=02 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 02 + 0 )) + D_DATE=2015061002 + export D_DATE + echo 2015061002 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 7200 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=7200 + export SEC_GREG + echo 2015061003 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 10800 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=10800 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100130 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100130 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100130 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100130 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100130 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100130 + ASIM_MIN_HH=01 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100230 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100230 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100230 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100230 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100230 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100230 + ASIM_MAX_HH=02 + export ASIM_MAX_HH + echo 201506100130 201506100130 + echo 201506100130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 5400 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=5400 + export ASIM_MIN_SEC_GREG + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=9000 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061002 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061002 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + END_DATE=2015061003 + export END_DATE + cut -c1-4 + echo 2015061002 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061002 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061002 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061002 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061002 + START_HOUR=02 + export START_HOUR + START_FILE_DATE=2015-06-10_02:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061003 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061003 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061003 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061003 + END_HOUR=03 + export END_HOUR + END_FILE_DATE=2015-06-10_03:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061001/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=02,02,02 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=03,03,03 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 5400 + (( temp[1]=5400+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=5401 + export NL_FIRST_OBS_SECONDS + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=9000 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061002 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=2 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=2 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=10800 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100130 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100230 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100130 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100130 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100130 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100130 + ASIM_MN_HH=01 + export ASIM_MN_HH + cut -c1-4 + echo 201506100230 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100230 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100230 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100230 + ASIM_MX_HH=02 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + E_DATE=2015061003 + export E_DATE + cut -c1-4 + echo 2015061003 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061003 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061003 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061003 + E_HH=03 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061002 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + cut -c1-4 + echo 2015061002 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061002 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061002 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061002 + L_START_HOUR=02 + export L_START_HOUR + cut -c1-4 + echo 2015061003 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061003 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061003 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061003 + L_END_HOUR=03 + export L_END_HOUR + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + NL_START_HOUR=02,02,02 + export NL_START_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_END_HOUR=03,03,03 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_END_DATE + P_DATE=2015061002 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_END_DATE=2015061003 + export P_END_DATE + [[ 2015061002 -le 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_02:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 4665_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30275.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24184 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4502.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147794 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 4665_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23472.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24198 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15019.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147795 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 4665_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21057.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24212 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29418.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147796 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 4665_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12077.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24241 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18952.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147797 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 4665_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1361.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24254 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20274.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147798 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 4665_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10003.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24268 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22119.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147799 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 4665_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_429.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24296 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25445.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147800 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 4665_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25731.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24309 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22346.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147801 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 4665_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18148.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24323 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26831.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147802 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 4665_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5773.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24351 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27344.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147803 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 4665_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18173.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24370 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25911.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147804 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 4665_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30537.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24384 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5569.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147805 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 4665_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3658.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24411 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27989.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147806 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 4665_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1287.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24425 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17458.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147807 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 4665_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13614.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24438 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1937.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147808 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 4665_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3723.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24466 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3743.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147809 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 4665_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14947.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24480 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31050.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147810 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 4665_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18167.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24493 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2134.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147811 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 4665_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20377.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24522 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12134.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147812 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 4665_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30710.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24535 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10738.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147813 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 4665_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32535.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24549 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10039.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147814 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 4665_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15392.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24577 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25536.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147815 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 4665_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8628.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24591 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7462.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147816 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 4665_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25006.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24604 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10987.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147817 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 4665_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7003.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24633 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17904.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147818 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 4665_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13546.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24647 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28708.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147819 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 4665_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12584.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24660 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24441.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147820 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 4665_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15766.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24689 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27809.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147821 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 4665_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7204.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24702 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5630.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147822 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 4665_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7181.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24716 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12626.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147823 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_03:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4502.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + echo 2015061002 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24842 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25157.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147824 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15019.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24856 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20570.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147825 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29418.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24870 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7691.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147826 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18952.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24898 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28831.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147827 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20274.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24912 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24465.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147828 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22119.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24925 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32240.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147829 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25445.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24953 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6710.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147830 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22346.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24966 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8495.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147831 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26831.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24980 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28720.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147832 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27344.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25007 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23951.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147833 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25911.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25021 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10302.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147834 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5569.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25034 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13201.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147835 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27989.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25063 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24320.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147836 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17458.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25077 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28651.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147837 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1937.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25090 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2423.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147838 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3743.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25118 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19121.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147839 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31050.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25131 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8167.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147840 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2134.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25145 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16208.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147841 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12134.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25173 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7291.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147842 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10738.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25186 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28575.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147843 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10039.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25200 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11139.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147844 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25536.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25227 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_536.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147845 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7462.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25241 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16889.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147846 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10987.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25254 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32656.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147847 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17904.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25282 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19998.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147848 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28708.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25295 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23150.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147849 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24441.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25309 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26905.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147850 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27809.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25337 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10169.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147851 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5630.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25350 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2658.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147852 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12626.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25364 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12286.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147853 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061003 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=23949 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25779 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8548.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147854 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=23949 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25992 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6886.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147855 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=23949 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26203 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9463.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147856 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=23949 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26418 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5197.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147857 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=23949 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26630 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_4943.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147858 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=23949 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26843 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19146.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147859 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=23949 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27054 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_29460.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147860 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=23949 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27267 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7125.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147861 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=23949 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27483 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20642.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147862 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=23949 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27695 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_14337.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147863 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/exo_coldens ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/seasons_wes ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + LE_DATE=2015061003 + export LE_DATE + [[ 2015061002 -le 2015061003 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_02:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_02:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_02:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_02:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_03:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_03:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147864 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=02 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_02:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_02:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 ./. + mv wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e000 + mv wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_d01_2015-06-10_02:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27952 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_02:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.27952 rm -f tmp.27952 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e000 set files = ( wrfinput_d01_2015-06-10_02:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e000 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e000 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28022 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.28022 rm -f tmp.28022 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28022 rm -f tmp.28022 if ( wrfinput_d01_2015-06-10_02:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e000 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e000 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01_2015-06-10_02:00:00 + mv wrfbdy_d01_2015-06-10_02:00:00.e000 wrfbdy_d01_2015-06-10_02:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=02 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28108 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_02:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.28108 rm -f tmp.28108 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e001 set files = ( wrfinput_d01_2015-06-10_02:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e001 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e001 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28177 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.28177 rm -f tmp.28177 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28177 rm -f tmp.28177 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e001 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e001 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28260 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_02:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.28260 rm -f tmp.28260 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e002 set files = ( wrfinput_d01_2015-06-10_02:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e002 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e002 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28329 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.28329 rm -f tmp.28329 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28329 rm -f tmp.28329 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e002 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e002 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28412 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_02:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.28412 rm -f tmp.28412 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e003 set files = ( wrfinput_d01_2015-06-10_02:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e003 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e003 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28480 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.28480 rm -f tmp.28480 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28480 rm -f tmp.28480 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e003 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e003 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28563 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_02:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.28563 rm -f tmp.28563 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e004 set files = ( wrfinput_d01_2015-06-10_02:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e004 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e004 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28632 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.28632 rm -f tmp.28632 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28632 rm -f tmp.28632 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e004 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e004 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28715 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_02:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.28715 rm -f tmp.28715 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e005 set files = ( wrfinput_d01_2015-06-10_02:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e005 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e005 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28785 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.28785 rm -f tmp.28785 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28785 rm -f tmp.28785 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e005 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e005 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28868 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_02:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.28868 rm -f tmp.28868 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e006 set files = ( wrfinput_d01_2015-06-10_02:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e006 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e006 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28939 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.28939 rm -f tmp.28939 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28939 rm -f tmp.28939 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e006 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e006 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29027 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_02:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.29027 rm -f tmp.29027 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e007 set files = ( wrfinput_d01_2015-06-10_02:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e007 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e007 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29096 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.29096 rm -f tmp.29096 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.29096 rm -f tmp.29096 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e007 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e007 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29179 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_02:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.29179 rm -f tmp.29179 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e008 set files = ( wrfinput_d01_2015-06-10_02:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e008 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e008 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29248 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.29248 rm -f tmp.29248 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.29248 rm -f tmp.29248 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e008 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e008 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29331 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_02:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.29331 rm -f tmp.29331 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e009 set files = ( wrfinput_d01_2015-06-10_02:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e009 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e009 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29399 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.29399 rm -f tmp.29399 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.29399 rm -f tmp.29399 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e009 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e009 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29482 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.29482 rm -f tmp.29482 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e010 set files = ( wrfinput_d01_2015-06-10_02:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e010 ) then rm -f mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e010 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29551 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.29551 rm -f tmp.29551 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.29551 rm -f tmp.29551 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e010 ) then rm -f mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e010 endif if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147865 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=02 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_02:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 ./. + mv wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02_2015-06-10_02:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.29668 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_02:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.29668 rm -f tmp.29668 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e000 set files = ( wrfinput_d02_2015-06-10_02:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e000 ) then rm -f mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e000 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_02:00:00.e000 wrfinput_d02_2015-06-10_02:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=02 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.29743 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_02:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.29743 rm -f tmp.29743 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e001 set files = ( wrfinput_d02_2015-06-10_02:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e001 ) then rm -f mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e001 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.29816 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_02:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.29816 rm -f tmp.29816 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e002 set files = ( wrfinput_d02_2015-06-10_02:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e002 ) then rm -f mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e002 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.29889 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_02:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.29889 rm -f tmp.29889 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e003 set files = ( wrfinput_d02_2015-06-10_02:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e003 ) then rm -f mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e003 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.29962 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_02:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.29962 rm -f tmp.29962 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e004 set files = ( wrfinput_d02_2015-06-10_02:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e004 ) then rm -f mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e004 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30035 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_02:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.30035 rm -f tmp.30035 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e005 set files = ( wrfinput_d02_2015-06-10_02:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e005 ) then rm -f mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e005 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30109 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_02:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.30109 rm -f tmp.30109 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e006 set files = ( wrfinput_d02_2015-06-10_02:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e006 ) then rm -f mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e006 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30182 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_02:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.30182 rm -f tmp.30182 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e007 set files = ( wrfinput_d02_2015-06-10_02:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e007 ) then rm -f mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e007 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30255 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_02:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.30255 rm -f tmp.30255 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e008 set files = ( wrfinput_d02_2015-06-10_02:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e008 ) then rm -f mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e008 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30328 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_02:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.30328 rm -f tmp.30328 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e009 set files = ( wrfinput_d02_2015-06-10_02:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e009 ) then rm -f mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e009 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30402 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.30402 rm -f tmp.30402 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e010 set files = ( wrfinput_d02_2015-06-10_02:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e010 ) then rm -f mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e010 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147866 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=02 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_02:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfinput_d03_2015-06-10_02:00:00 ./. + mv wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03_2015-06-10_02:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.30514 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_02:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.30514 rm -f tmp.30514 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e000 set files = ( wrfinput_d03_2015-06-10_02:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e000 ) then rm -f mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e000 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_02:00:00.e000 wrfinput_d03_2015-06-10_02:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=02 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.30590 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_02:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.30590 rm -f tmp.30590 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e001 set files = ( wrfinput_d03_2015-06-10_02:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e001 ) then rm -f mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e001 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.30663 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_02:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.30663 rm -f tmp.30663 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e002 set files = ( wrfinput_d03_2015-06-10_02:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e002 ) then rm -f mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e002 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.30736 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_02:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.30736 rm -f tmp.30736 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e003 set files = ( wrfinput_d03_2015-06-10_02:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e003 ) then rm -f mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e003 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.30809 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_02:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.30809 rm -f tmp.30809 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e004 set files = ( wrfinput_d03_2015-06-10_02:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e004 ) then rm -f mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e004 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.30882 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_02:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.30882 rm -f tmp.30882 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e005 set files = ( wrfinput_d03_2015-06-10_02:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e005 ) then rm -f mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e005 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.30955 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_02:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.30955 rm -f tmp.30955 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e006 set files = ( wrfinput_d03_2015-06-10_02:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e006 ) then rm -f mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e006 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31028 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_02:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.31028 rm -f tmp.31028 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e007 set files = ( wrfinput_d03_2015-06-10_02:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e007 ) then rm -f mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e007 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31163 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_02:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.31163 rm -f tmp.31163 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e008 set files = ( wrfinput_d03_2015-06-10_02:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e008 ) then rm -f mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e008 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31301 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_02:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.31301 rm -f tmp.31301 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e009 set files = ( wrfinput_d03_2015-06-10_02:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e009 ) then rm -f mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e009 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31382 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.31382 rm -f tmp.31382 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e010 set files = ( wrfinput_d03_2015-06-10_02:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e010 ) then rm -f mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e010 endif if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_d01_2015-06-10_02:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02_2015-06-10_02:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/real/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03_2015-06-10_02:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e001 wrfbdy_d01_2015-06-10_02:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e001 wrfinput_d02_2015-06-10_02:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e001 wrfinput_d03_2015-06-10_02:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e002 wrfbdy_d01_2015-06-10_02:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e002 wrfinput_d02_2015-06-10_02:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e002 wrfinput_d03_2015-06-10_02:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e003 wrfbdy_d01_2015-06-10_02:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e003 wrfinput_d02_2015-06-10_02:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e003 wrfinput_d03_2015-06-10_02:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e004 wrfbdy_d01_2015-06-10_02:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e004 wrfinput_d02_2015-06-10_02:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e004 wrfinput_d03_2015-06-10_02:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e005 wrfbdy_d01_2015-06-10_02:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e005 wrfinput_d02_2015-06-10_02:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e005 wrfinput_d03_2015-06-10_02:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e006 wrfbdy_d01_2015-06-10_02:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e006 wrfinput_d02_2015-06-10_02:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e006 wrfinput_d03_2015-06-10_02:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e007 wrfbdy_d01_2015-06-10_02:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e007 wrfinput_d02_2015-06-10_02:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e007 wrfinput_d03_2015-06-10_02:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e008 wrfbdy_d01_2015-06-10_02:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e008 wrfinput_d02_2015-06-10_02:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e008 wrfinput_d03_2015-06-10_02:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e009 wrfbdy_d01_2015-06-10_02:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e009 wrfinput_d02_2015-06-10_02:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e009 wrfinput_d03_2015-06-10_02:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e010 wrfbdy_d01_2015-06-10_02:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e010 wrfinput_d02_2015-06-10_02:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e010 wrfinput_d03_2015-06-10_02:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_emiss ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + rm -rf perturb_chem_emiss_CORR_RT_CONST.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + LE_DATE=2015061003 + export LE_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061002 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_02:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_02:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_02:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_02:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_02:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_02:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_02:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31870 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_22962.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147868 + WRFCHEMI=wrfchemi_d02_2015-06-10_02:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_02:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_02:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_02:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_02:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_02:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_02:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31923 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_29907.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147869 + WRFCHEMI=wrfchemi_d03_2015-06-10_02:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_02:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_02:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_02:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_02:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_02:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_02:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32108 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_8033.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147870 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061002 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_02:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32341 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_3450.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147871 + WRFCHEMI=wrfchemi_d02_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_02:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32395 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_5517.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147872 + WRFCHEMI=wrfchemi_d03_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_02:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32458 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_13722.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147873 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_02:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_02:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_02:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/airnow_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 02 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=02 + export L_HH + D_DATE=2015061002 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=02 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=02 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=01 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=02 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061002.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061002.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/tolnet_o3_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 02 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=02 + export L_HH + D_DATE=2015061002 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=02 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=02 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=01 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=02 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061002.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061002.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/combine_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/prepbufr_met_obs/obs_seq_prep_2015061002.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/prepbufr_met_obs/obs_seq_prep_2015061002.out ./obs_seq_MET_2015061002.out + FILE_LIST[1]=obs_seq_MET_2015061002.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/airnow_o3_obs/obs_seq_airnow_o3_2015061002.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/airnow_o3_obs/obs_seq_airnow_o3_2015061002.out ./obs_seq_AIR_O3_2015061002.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061002.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/tolnet_o3_obs/obs_seq_tolnet_o3_2015061002.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/tolnet_o3_obs/obs_seq_tolnet_o3_2015061002.out ./obs_seq_TOL_O3_2015061002.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061002.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061002.out\',\'obs_seq_AIR_O3_2015061002.out\',\'obs_seq_TOL_O3_2015061002.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=5400 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=9000 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 0 33 19 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=5400 which is Gregorian day: 2015 Jun 10 01:30:00 Excluding observations after: day=151370, sec=9000 which is Gregorian day: 2015 Jun 10 02:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_MET_2015061002.out are after last_obs time obs_sequence_tool No obs used from input sequence file obs_seq_MET_2015061002.out obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061002.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061002.out obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061002.out -------------- Obs seq file # : 2 Number of obs in previous seq : 0 Number of obs to be inserted : 957 Number of obs really inserted : 957 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 957 Actual number of obs in the new seq file : 957 Processing sequence file obs_seq.proc Data Metadata: AIRNOW observation QC Metadata: AIRNOW QC index First obs time: day=151370, sec=7200 Gregorian day: 2015 Jun 10 02:00:00 Last obs time: day=151370, sec=7200 Gregorian day: 2015 Jun 10 02:00:00 Number of obs processed : 957 --------------------------------------------------------- AIRNOW_O3 957 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 0 33 19 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061002.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/preprocess_obs ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5400, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/combine_obs/obs_seq_comb_2015061002.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 7200 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147893 + mv obs_seq.new obs_seq_comb_filtered_2015061002.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061003 + export CYCLE_DATE + [[ 2015061003 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061003 + export DATE + cut -c1-4 + echo 2015061003 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061003 + YY=15 + export YY + cut -c5-6 + echo 2015061003 + MM=06 + export MM + cut -c7-8 + echo 2015061003 + DD=10 + export DD + cut -c9-10 + echo 2015061003 + HH=03 + export HH + DATE_SHORT=15061003 + export DATE_SHORT + FILE_DATE=2015-06-10_03:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -1 + 2> /dev/null + PAST_DATE=2015061002 + export PAST_DATE + cut -c1-4 + echo 2015061002 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061002 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061002 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061002 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061002 + PAST_HH=02 + export PAST_HH + PAST_FILE_DATE=2015-06-10_02:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + NEXT_DATE=2015061004 + export NEXT_DATE + cut -c1-4 + echo 2015061004 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061004 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061004 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061004 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061004 + NEXT_HH=04 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_04:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=03 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 03 + 0 )) + [[ 03 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=03 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 03 + 0 )) + D_DATE=2015061003 + export D_DATE + echo 2015061003 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 10800 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=10800 + export SEC_GREG + echo 2015061004 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 14400 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=14400 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100230 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100230 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100230 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100230 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100230 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100230 + ASIM_MIN_HH=02 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100330 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100330 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100330 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100330 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100330 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100330 + ASIM_MAX_HH=03 + export ASIM_MAX_HH + echo 201506100230 201506100230 + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=9000 + export ASIM_MIN_SEC_GREG + echo 201506100330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 12600 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=12600 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061003 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061003 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + END_DATE=2015061004 + export END_DATE + cut -c1-4 + echo 2015061003 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061003 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061003 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061003 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061003 + START_HOUR=03 + export START_HOUR + START_FILE_DATE=2015-06-10_03:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061004 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061004 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061004 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061004 + END_HOUR=04 + export END_HOUR + END_FILE_DATE=2015-06-10_04:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061002/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=03,03,03 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=04,04,04 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + (( temp[1]=9000+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=9001 + export NL_FIRST_OBS_SECONDS + echo 201506100330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 12600 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=12600 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061003 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=3 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=3 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=14400 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100230 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100330 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100230 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100230 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100230 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100230 + ASIM_MN_HH=02 + export ASIM_MN_HH + cut -c1-4 + echo 201506100330 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100330 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100330 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100330 + ASIM_MX_HH=03 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + E_DATE=2015061004 + export E_DATE + cut -c1-4 + echo 2015061004 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061004 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061004 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061004 + E_HH=04 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061003 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + cut -c1-4 + echo 2015061003 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061003 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061003 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061003 + L_START_HOUR=03 + export L_START_HOUR + cut -c1-4 + echo 2015061004 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061004 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061004 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061004 + L_END_HOUR=04 + export L_END_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_START_HOUR=03,03,03 + export NL_START_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_END_HOUR=04,04,04 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_END_DATE + P_DATE=2015061003 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_END_DATE=2015061004 + export P_END_DATE + [[ 2015061003 -le 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_03:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1893 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17266.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147894 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1906 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27054.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147895 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1920 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1543.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147896 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1947 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32324.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147897 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1961 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21363.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147898 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1974 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25573.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147899 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2002 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4022.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147900 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2016 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9287.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147901 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2029 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1207.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147902 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2056 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2441.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147903 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2070 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31548.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147904 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2083 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30375.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147905 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2110 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31804.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147906 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2124 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21009.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147907 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2137 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_419.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147908 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2164 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32428.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147909 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2178 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2930.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147910 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2191 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11300.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147911 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2219 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21778.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147912 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2232 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6448.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147913 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2245 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5486.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147914 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2282 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23808.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147915 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2295 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31816.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147916 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2309 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5518.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147917 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2338 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32389.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147918 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2352 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_347.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147919 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2366 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26646.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147920 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2394 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24125.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147921 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2408 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28584.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147922 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2422 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24874.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147923 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_04:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17266.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2648 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21679.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147924 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27054.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2664 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3551.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147925 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1543.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2686 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32487.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147926 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32324.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2714 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14506.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147927 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21363.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2732 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5960.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147928 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25573.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2746 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16158.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147929 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4022.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2774 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23744.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147930 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9287.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2788 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29330.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147931 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1207.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2802 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15056.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147932 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2441.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2829 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13774.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147933 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31548.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2844 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_113.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147934 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30375.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2920 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24250.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147935 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31804.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2981 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23827.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147936 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21009.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3027 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15955.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147937 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_419.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3041 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16243.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147938 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32428.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3068 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11581.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147939 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2930.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3082 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30779.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147940 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11300.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3098 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6952.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147941 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21778.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3132 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28335.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147942 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6448.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3147 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26631.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147943 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5486.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3162 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7799.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147944 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23808.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3194 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4260.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147945 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31816.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3207 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4475.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147946 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5518.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3222 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10697.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147947 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32389.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3251 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5040.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147948 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_347.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3265 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13296.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147949 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26646.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3278 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12935.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147950 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24125.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3307 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10045.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147951 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28584.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3320 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6572.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147952 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24874.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3335 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18414.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147953 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061004 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=23949 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3656 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5423.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147954 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=23949 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3869 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18183.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147955 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=23949 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4095 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11428.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147956 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=23949 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4306 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16478.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147957 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=23949 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4517 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19598.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147958 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=23949 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4732 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_26918.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147959 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=23949 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4944 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1593.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147960 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=23949 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5156 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_10606.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147961 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=23949 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5367 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15962.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147963 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061002.out','obs_seq_AIR_O3_2015061002.out','obs_seq_TOL_O3_2015061002.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=23949 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5578 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31176.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147964 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + LE_DATE=2015061004 + export LE_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_03:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_03:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_04:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_04:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147966 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=03 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_03:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_03:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 ./. + mv wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e000 + mv wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_d01_2015-06-10_03:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5842 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_03:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.5842 rm -f tmp.5842 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e000 set files = ( wrfinput_d01_2015-06-10_03:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5910 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.5910 rm -f tmp.5910 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.5910 rm -f tmp.5910 if ( wrfinput_d01_2015-06-10_03:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00.e000 echo wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01_2015-06-10_03:00:00.e000 ln -s wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01_2015-06-10_03:00:00 + mv wrfbdy_d01_2015-06-10_03:00:00.e000 wrfbdy_d01_2015-06-10_03:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=03 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5995 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_03:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.5995 rm -f tmp.5995 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e001 set files = ( wrfinput_d01_2015-06-10_03:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6063 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.6063 rm -f tmp.6063 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.6063 rm -f tmp.6063 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6145 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_03:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.6145 rm -f tmp.6145 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e002 set files = ( wrfinput_d01_2015-06-10_03:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6213 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.6213 rm -f tmp.6213 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.6213 rm -f tmp.6213 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6295 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_03:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.6295 rm -f tmp.6295 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e003 set files = ( wrfinput_d01_2015-06-10_03:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6362 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.6362 rm -f tmp.6362 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.6362 rm -f tmp.6362 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6444 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_03:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.6444 rm -f tmp.6444 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e004 set files = ( wrfinput_d01_2015-06-10_03:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6512 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.6512 rm -f tmp.6512 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.6512 rm -f tmp.6512 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6594 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_03:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.6594 rm -f tmp.6594 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e005 set files = ( wrfinput_d01_2015-06-10_03:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6662 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.6662 rm -f tmp.6662 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.6662 rm -f tmp.6662 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6744 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_03:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.6744 rm -f tmp.6744 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e006 set files = ( wrfinput_d01_2015-06-10_03:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6811 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.6811 rm -f tmp.6811 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.6811 rm -f tmp.6811 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6893 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_03:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.6893 rm -f tmp.6893 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e007 set files = ( wrfinput_d01_2015-06-10_03:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6961 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.6961 rm -f tmp.6961 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.6961 rm -f tmp.6961 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7043 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_03:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.7043 rm -f tmp.7043 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e008 set files = ( wrfinput_d01_2015-06-10_03:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7111 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.7111 rm -f tmp.7111 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.7111 rm -f tmp.7111 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7193 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_03:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.7193 rm -f tmp.7193 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e009 set files = ( wrfinput_d01_2015-06-10_03:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7261 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.7261 rm -f tmp.7261 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.7261 rm -f tmp.7261 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7343 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.7343 rm -f tmp.7343 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e010 set files = ( wrfinput_d01_2015-06-10_03:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7413 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.7413 rm -f tmp.7413 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.7413 rm -f tmp.7413 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147987 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=03 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_03:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 ./. + mv wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02_2015-06-10_03:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7530 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_03:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.7530 rm -f tmp.7530 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e000 set files = ( wrfinput_d02_2015-06-10_03:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_03:00:00.e000 wrfinput_d02_2015-06-10_03:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=03 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7605 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_03:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.7605 rm -f tmp.7605 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e001 set files = ( wrfinput_d02_2015-06-10_03:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7677 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_03:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.7677 rm -f tmp.7677 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e002 set files = ( wrfinput_d02_2015-06-10_03:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7749 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_03:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.7749 rm -f tmp.7749 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e003 set files = ( wrfinput_d02_2015-06-10_03:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7821 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_03:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.7821 rm -f tmp.7821 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e004 set files = ( wrfinput_d02_2015-06-10_03:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7893 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_03:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.7893 rm -f tmp.7893 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e005 set files = ( wrfinput_d02_2015-06-10_03:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7969 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_03:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.7969 rm -f tmp.7969 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e006 set files = ( wrfinput_d02_2015-06-10_03:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8041 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_03:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.8041 rm -f tmp.8041 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e007 set files = ( wrfinput_d02_2015-06-10_03:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8114 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_03:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.8114 rm -f tmp.8114 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e008 set files = ( wrfinput_d02_2015-06-10_03:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8186 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_03:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.8186 rm -f tmp.8186 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e009 set files = ( wrfinput_d02_2015-06-10_03:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8258 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.8258 rm -f tmp.8258 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e010 set files = ( wrfinput_d02_2015-06-10_03:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147992 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=03 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_03:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfinput_d03_2015-06-10_03:00:00 ./. + mv wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03_2015-06-10_03:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8497 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_03:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.8497 rm -f tmp.8497 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e000 set files = ( wrfinput_d03_2015-06-10_03:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_03:00:00.e000 wrfinput_d03_2015-06-10_03:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=03 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8571 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_03:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8571 rm -f tmp.8571 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e001 set files = ( wrfinput_d03_2015-06-10_03:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8642 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_03:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8642 rm -f tmp.8642 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e002 set files = ( wrfinput_d03_2015-06-10_03:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8715 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_03:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8715 rm -f tmp.8715 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e003 set files = ( wrfinput_d03_2015-06-10_03:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8787 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_03:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.8787 rm -f tmp.8787 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e004 set files = ( wrfinput_d03_2015-06-10_03:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8859 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_03:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.8859 rm -f tmp.8859 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e005 set files = ( wrfinput_d03_2015-06-10_03:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8931 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_03:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.8931 rm -f tmp.8931 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e006 set files = ( wrfinput_d03_2015-06-10_03:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.9003 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_03:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.9003 rm -f tmp.9003 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e007 set files = ( wrfinput_d03_2015-06-10_03:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.9075 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_03:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9075 rm -f tmp.9075 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e008 set files = ( wrfinput_d03_2015-06-10_03:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.9147 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_03:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9147 rm -f tmp.9147 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e009 set files = ( wrfinput_d03_2015-06-10_03:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.9219 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9219 rm -f tmp.9219 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e010 set files = ( wrfinput_d03_2015-06-10_03:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_d01_2015-06-10_03:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02_2015-06-10_03:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/real/wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03_2015-06-10_03:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e001 wrfbdy_d01_2015-06-10_03:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e001 wrfinput_d02_2015-06-10_03:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e001 wrfinput_d03_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e002 wrfbdy_d01_2015-06-10_03:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e002 wrfinput_d02_2015-06-10_03:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e002 wrfinput_d03_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e003 wrfbdy_d01_2015-06-10_03:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e003 wrfinput_d02_2015-06-10_03:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e003 wrfinput_d03_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e004 wrfbdy_d01_2015-06-10_03:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e004 wrfinput_d02_2015-06-10_03:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e004 wrfinput_d03_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e005 wrfbdy_d01_2015-06-10_03:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e005 wrfinput_d02_2015-06-10_03:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e005 wrfinput_d03_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e006 wrfbdy_d01_2015-06-10_03:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e006 wrfinput_d02_2015-06-10_03:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e006 wrfinput_d03_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e007 wrfbdy_d01_2015-06-10_03:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e007 wrfinput_d02_2015-06-10_03:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e007 wrfinput_d03_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e008 wrfbdy_d01_2015-06-10_03:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e008 wrfinput_d02_2015-06-10_03:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e008 wrfinput_d03_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e009 wrfbdy_d01_2015-06-10_03:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e009 wrfinput_d02_2015-06-10_03:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e009 wrfinput_d03_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e010 wrfbdy_d01_2015-06-10_03:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e010 wrfinput_d02_2015-06-10_03:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e010 wrfinput_d03_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + LE_DATE=2015061004 + export LE_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061003 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_03:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9709 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_2380.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148010 + WRFCHEMI=wrfchemi_d02_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_03:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9885 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_5776.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148011 + WRFCHEMI=wrfchemi_d03_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_03:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9946 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_32737.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148012 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061003 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_03:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10176 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_20987.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148013 + WRFCHEMI=wrfchemi_d02_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_03:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10231 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_2830.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148014 + WRFCHEMI=wrfchemi_d03_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_03:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10298 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_22612.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148015 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_03:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_03:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_03:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 03 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=03 + export L_HH + D_DATE=2015061003 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=03 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=03 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=02 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=03 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061003.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061003.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 03 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=03 + export L_HH + D_DATE=2015061003 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=03 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=03 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=02 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=03 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061003.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061003.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/prepbufr_met_obs/obs_seq_prep_2015061003.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/prepbufr_met_obs/obs_seq_prep_2015061003.out ./obs_seq_MET_2015061003.out + FILE_LIST[1]=obs_seq_MET_2015061003.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/airnow_o3_obs/obs_seq_airnow_o3_2015061003.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/airnow_o3_obs/obs_seq_airnow_o3_2015061003.out ./obs_seq_AIR_O3_2015061003.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061003.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/tolnet_o3_obs/obs_seq_tolnet_o3_2015061003.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/tolnet_o3_obs/obs_seq_tolnet_o3_2015061003.out ./obs_seq_TOL_O3_2015061003.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061003.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061003.out\',\'obs_seq_AIR_O3_2015061003.out\',\'obs_seq_TOL_O3_2015061003.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=9000 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=12600 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 0 53 44 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=9000 which is Gregorian day: 2015 Jun 10 02:30:00 Excluding observations after: day=151370, sec=12600 which is Gregorian day: 2015 Jun 10 03:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061003.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061003.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061003.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 1060 Number of obs really inserted : 1060 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061003.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 1060 Number of obs to be inserted : 941 Number of obs really inserted : 941 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 2001 Actual number of obs in the new seq file : 2001 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=10800 Gregorian day: 2015 Jun 10 03:00:00 Last obs time: day=151370, sec=12600 Gregorian day: 2015 Jun 10 03:30:00 Number of obs processed : 2001 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 11 obs RADIOSONDE_V_WIND_COMPONENT 11 obs RADIOSONDE_TEMPERATURE 11 obs RADIOSONDE_SPECIFIC_HUMIDITY 11 obs AIRCRAFT_U_WIND_COMPONENT 1 obs AIRCRAFT_V_WIND_COMPONENT 1 obs AIRCRAFT_TEMPERATURE 33 obs MARINE_SFC_U_WIND_COMPONENT 218 obs MARINE_SFC_V_WIND_COMPONENT 218 obs MARINE_SFC_TEMPERATURE 247 obs MARINE_SFC_SPECIFIC_HUMIDITY 35 obs RADIOSONDE_SURFACE_ALTIMETER 1 obs MARINE_SFC_ALTIMETER 262 obs AIRNOW_O3 941 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 0 53 44 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061003.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9000, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/combine_obs/obs_seq_comb_2015061003.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 10800 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148016 + mv obs_seq.new obs_seq_comb_filtered_2015061003.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061004 + export CYCLE_DATE + [[ 2015061004 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061004 + export DATE + echo 2015061004 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061004 + YY=15 + export YY + cut -c5-6 + echo 2015061004 + MM=06 + export MM + cut -c7-8 + echo 2015061004 + DD=10 + export DD + cut -c9-10 + echo 2015061004 + HH=04 + export HH + DATE_SHORT=15061004 + export DATE_SHORT + FILE_DATE=2015-06-10_04:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -1 + 2> /dev/null + PAST_DATE=2015061003 + export PAST_DATE + cut -c1-4 + echo 2015061003 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061003 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061003 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061003 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061003 + PAST_HH=03 + export PAST_HH + PAST_FILE_DATE=2015-06-10_03:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + NEXT_DATE=2015061005 + export NEXT_DATE + cut -c1-4 + echo 2015061005 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061005 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061005 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061005 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061005 + NEXT_HH=05 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_05:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=04 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 04 + 0 )) + [[ 04 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=04 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 04 + 0 )) + D_DATE=2015061004 + export D_DATE + echo 2015061004 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 14400 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=14400 + export SEC_GREG + echo 2015061005 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 18000 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=18000 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100330 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100330 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100330 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100330 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100330 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100330 + ASIM_MIN_HH=03 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100430 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100430 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100430 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100430 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100430 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100430 + ASIM_MAX_HH=04 + export ASIM_MAX_HH + echo 201506100330 201506100330 + echo 201506100330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 12600 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=12600 + export ASIM_MIN_SEC_GREG + echo 201506100430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 16200 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=16200 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061004 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061004 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + END_DATE=2015061005 + export END_DATE + cut -c1-4 + echo 2015061004 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061004 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061004 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061004 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061004 + START_HOUR=04 + export START_HOUR + START_FILE_DATE=2015-06-10_04:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061005 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061005 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061005 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061005 + END_HOUR=05 + export END_HOUR + END_FILE_DATE=2015-06-10_05:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061003/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=04,04,04 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=05,05,05 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 12600 + (( temp[1]=12600+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=12601 + export NL_FIRST_OBS_SECONDS + echo 201506100430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 16200 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=16200 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061004 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=4 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=4 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=18000 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100330 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100430 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100330 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100330 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100330 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100330 + ASIM_MN_HH=03 + export ASIM_MN_HH + cut -c1-4 + echo 201506100430 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100430 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100430 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100430 + ASIM_MX_HH=04 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + E_DATE=2015061005 + export E_DATE + cut -c1-4 + echo 2015061005 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061005 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061005 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061005 + E_HH=05 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061004 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + cut -c1-4 + echo 2015061004 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061004 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061004 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061004 + L_START_HOUR=04 + export L_START_HOUR + cut -c1-4 + echo 2015061005 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061005 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061005 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061005 + L_END_HOUR=05 + export L_END_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_START_HOUR=04,04,04 + export NL_START_HOUR + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + NL_END_HOUR=05,05,05 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\'' + export NL_END_DATE + P_DATE=2015061004 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_END_DATE=2015061005 + export P_END_DATE + [[ 2015061004 -le 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_04:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13410 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18644.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148018 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13424 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32283.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148019 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13438 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12648.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148020 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13465 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16003.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148021 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13478 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19408.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148022 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13492 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15188.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148023 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13519 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17121.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148024 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13532 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8905.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148025 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13546 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21422.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148026 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13573 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16393.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148027 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13587 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14823.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148028 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13600 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4546.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148029 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13627 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9239.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148030 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13641 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21715.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148031 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13654 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23799.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148032 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13681 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28239.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148033 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13695 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22291.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148034 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13708 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31395.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148035 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13735 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27402.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148036 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13749 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18182.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148037 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13762 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21350.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148038 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13789 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21399.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148039 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13803 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16209.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148040 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13816 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17350.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148041 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13843 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19580.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148042 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13857 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22160.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148043 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13870 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8784.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148044 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13898 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22463.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148045 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13911 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16504.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148046 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13924 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10632.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148047 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_05:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18644.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17535 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31164.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148049 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32283.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17548 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15630.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148050 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12648.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17562 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25050.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148051 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16003.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17594 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13908.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148052 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19408.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17607 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13423.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148053 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15188.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17621 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9811.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148054 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17121.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17648 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17057.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148055 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8905.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17662 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20762.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148056 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21422.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17676 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29772.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148057 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16393.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17703 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28875.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148058 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14823.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17717 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2947.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148059 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4546.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17730 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21670.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148060 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9239.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17758 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13465.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148061 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21715.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17771 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6778.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148062 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23799.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17785 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23589.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148063 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28239.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17812 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29374.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148064 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22291.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17826 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14160.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148065 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31395.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17839 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15467.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148066 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27402.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17867 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4570.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148067 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18182.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17881 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32285.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148068 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21350.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17895 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6501.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148069 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21399.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17923 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2815.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148070 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16209.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17936 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27190.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148071 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17350.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17950 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24899.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148072 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19580.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17978 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_967.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148073 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22160.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17991 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21346.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148074 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8784.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18005 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31358.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148075 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22463.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18033 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17788.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148076 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16504.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18047 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28180.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148077 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10632.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18060 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30430.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148078 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061005 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=23949 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=19316 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_22235.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148080 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=23949 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=19556 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_14840.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148081 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=23949 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=19768 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27986.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148082 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=23949 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=19980 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28311.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148083 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=23949 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20191 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8491.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148084 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=23949 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20407 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6077.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148085 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=23949 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20620 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7461.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148086 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=23949 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20831 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28836.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148087 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=23949 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21042 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31409.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148088 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061003.out','obs_seq_AIR_O3_2015061003.out','obs_seq_TOL_O3_2015061003.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=23949 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21254 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31414.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148089 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + LE_DATE=2015061005 + export LE_DATE + [[ 2015061004 -le 2015061005 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_04:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_04:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_05:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_05:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148090 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=04 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_04:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_04:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 ./. + mv wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e000 + mv wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_d01_2015-06-10_04:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21396 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_04:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.21396 rm -f tmp.21396 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e000 set files = ( wrfinput_d01_2015-06-10_04:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21464 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.21464 rm -f tmp.21464 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.21464 rm -f tmp.21464 if ( wrfinput_d01_2015-06-10_04:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00.e000 echo wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01_2015-06-10_04:00:00.e000 ln -s wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01_2015-06-10_04:00:00 + mv wrfbdy_d01_2015-06-10_04:00:00.e000 wrfbdy_d01_2015-06-10_04:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=04 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21549 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_04:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.21549 rm -f tmp.21549 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e001 set files = ( wrfinput_d01_2015-06-10_04:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21617 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.21617 rm -f tmp.21617 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.21617 rm -f tmp.21617 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21699 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_04:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.21699 rm -f tmp.21699 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e002 set files = ( wrfinput_d01_2015-06-10_04:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21767 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.21767 rm -f tmp.21767 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.21767 rm -f tmp.21767 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21849 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_04:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.21849 rm -f tmp.21849 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e003 set files = ( wrfinput_d01_2015-06-10_04:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21917 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.21917 rm -f tmp.21917 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.21917 rm -f tmp.21917 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22000 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_04:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.22000 rm -f tmp.22000 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e004 set files = ( wrfinput_d01_2015-06-10_04:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22069 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.22069 rm -f tmp.22069 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.22069 rm -f tmp.22069 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22151 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_04:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.22151 rm -f tmp.22151 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e005 set files = ( wrfinput_d01_2015-06-10_04:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22219 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.22219 rm -f tmp.22219 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.22219 rm -f tmp.22219 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22303 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_04:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.22303 rm -f tmp.22303 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e006 set files = ( wrfinput_d01_2015-06-10_04:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22371 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.22371 rm -f tmp.22371 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.22371 rm -f tmp.22371 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22453 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_04:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.22453 rm -f tmp.22453 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e007 set files = ( wrfinput_d01_2015-06-10_04:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22521 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.22521 rm -f tmp.22521 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.22521 rm -f tmp.22521 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22603 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_04:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.22603 rm -f tmp.22603 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e008 set files = ( wrfinput_d01_2015-06-10_04:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22670 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.22670 rm -f tmp.22670 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.22670 rm -f tmp.22670 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22752 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_04:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.22752 rm -f tmp.22752 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e009 set files = ( wrfinput_d01_2015-06-10_04:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22820 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.22820 rm -f tmp.22820 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.22820 rm -f tmp.22820 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22902 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.22902 rm -f tmp.22902 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e010 set files = ( wrfinput_d01_2015-06-10_04:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22969 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.22969 rm -f tmp.22969 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.22969 rm -f tmp.22969 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148091 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=04 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_04:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 ./. + mv wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02_2015-06-10_04:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23210 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_04:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.23210 rm -f tmp.23210 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e000 set files = ( wrfinput_d02_2015-06-10_04:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_04:00:00.e000 wrfinput_d02_2015-06-10_04:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=04 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23286 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_04:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.23286 rm -f tmp.23286 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e001 set files = ( wrfinput_d02_2015-06-10_04:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23362 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_04:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.23362 rm -f tmp.23362 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e002 set files = ( wrfinput_d02_2015-06-10_04:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23434 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_04:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.23434 rm -f tmp.23434 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e003 set files = ( wrfinput_d02_2015-06-10_04:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23506 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_04:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.23506 rm -f tmp.23506 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e004 set files = ( wrfinput_d02_2015-06-10_04:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23578 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_04:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.23578 rm -f tmp.23578 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e005 set files = ( wrfinput_d02_2015-06-10_04:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23650 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_04:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.23650 rm -f tmp.23650 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e006 set files = ( wrfinput_d02_2015-06-10_04:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23722 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_04:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.23722 rm -f tmp.23722 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e007 set files = ( wrfinput_d02_2015-06-10_04:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23794 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_04:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.23794 rm -f tmp.23794 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e008 set files = ( wrfinput_d02_2015-06-10_04:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23867 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_04:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.23867 rm -f tmp.23867 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e009 set files = ( wrfinput_d02_2015-06-10_04:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23946 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.23946 rm -f tmp.23946 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e010 set files = ( wrfinput_d02_2015-06-10_04:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148092 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=04 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_04:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfinput_d03_2015-06-10_04:00:00 ./. + mv wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03_2015-06-10_04:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24056 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_04:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.24056 rm -f tmp.24056 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e000 set files = ( wrfinput_d03_2015-06-10_04:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_04:00:00.e000 wrfinput_d03_2015-06-10_04:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=04 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24131 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_04:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.24131 rm -f tmp.24131 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e001 set files = ( wrfinput_d03_2015-06-10_04:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24203 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_04:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.24203 rm -f tmp.24203 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e002 set files = ( wrfinput_d03_2015-06-10_04:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24275 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_04:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.24275 rm -f tmp.24275 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e003 set files = ( wrfinput_d03_2015-06-10_04:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24347 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_04:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.24347 rm -f tmp.24347 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e004 set files = ( wrfinput_d03_2015-06-10_04:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24420 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_04:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.24420 rm -f tmp.24420 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e005 set files = ( wrfinput_d03_2015-06-10_04:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24493 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_04:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.24493 rm -f tmp.24493 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e006 set files = ( wrfinput_d03_2015-06-10_04:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24565 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_04:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.24565 rm -f tmp.24565 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e007 set files = ( wrfinput_d03_2015-06-10_04:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24637 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_04:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.24637 rm -f tmp.24637 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e008 set files = ( wrfinput_d03_2015-06-10_04:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24709 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_04:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.24709 rm -f tmp.24709 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e009 set files = ( wrfinput_d03_2015-06-10_04:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24781 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.24781 rm -f tmp.24781 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e010 set files = ( wrfinput_d03_2015-06-10_04:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_d01_2015-06-10_04:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02_2015-06-10_04:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/real/wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03_2015-06-10_04:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e001 wrfbdy_d01_2015-06-10_04:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e001 wrfinput_d02_2015-06-10_04:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e001 wrfinput_d03_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e002 wrfbdy_d01_2015-06-10_04:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e002 wrfinput_d02_2015-06-10_04:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e002 wrfinput_d03_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e003 wrfbdy_d01_2015-06-10_04:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e003 wrfinput_d02_2015-06-10_04:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e003 wrfinput_d03_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e004 wrfbdy_d01_2015-06-10_04:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e004 wrfinput_d02_2015-06-10_04:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e004 wrfinput_d03_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e005 wrfbdy_d01_2015-06-10_04:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e005 wrfinput_d02_2015-06-10_04:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e005 wrfinput_d03_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e006 wrfbdy_d01_2015-06-10_04:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e006 wrfinput_d02_2015-06-10_04:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e006 wrfinput_d03_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e007 wrfbdy_d01_2015-06-10_04:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e007 wrfinput_d02_2015-06-10_04:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e007 wrfinput_d03_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e008 wrfbdy_d01_2015-06-10_04:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e008 wrfinput_d02_2015-06-10_04:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e008 wrfinput_d03_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e009 wrfbdy_d01_2015-06-10_04:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e009 wrfinput_d02_2015-06-10_04:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e009 wrfinput_d03_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e010 wrfbdy_d01_2015-06-10_04:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e010 wrfinput_d02_2015-06-10_04:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e010 wrfinput_d03_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + LE_DATE=2015061005 + export LE_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061004 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_04:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25392 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_19387.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148095 + WRFCHEMI=wrfchemi_d02_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_04:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25452 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_30681.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148096 + WRFCHEMI=wrfchemi_d03_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_04:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25511 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_27779.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148097 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061004 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_04:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25739 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_2694.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148098 + WRFCHEMI=wrfchemi_d02_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_04:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25919 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_6299.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148099 + WRFCHEMI=wrfchemi_d03_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_04:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25983 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_8996.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148100 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_04:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_04:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_04:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 04 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=04 + export L_HH + D_DATE=2015061004 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=04 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=04 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=03 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=04 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061004.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061004.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 04 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=04 + export L_HH + D_DATE=2015061004 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=04 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=04 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=03 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=04 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061004.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061004.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/prepbufr_met_obs/obs_seq_prep_2015061004.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/prepbufr_met_obs/obs_seq_prep_2015061004.out ./obs_seq_MET_2015061004.out + FILE_LIST[1]=obs_seq_MET_2015061004.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/airnow_o3_obs/obs_seq_airnow_o3_2015061004.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/airnow_o3_obs/obs_seq_airnow_o3_2015061004.out ./obs_seq_AIR_O3_2015061004.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061004.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/tolnet_o3_obs/obs_seq_tolnet_o3_2015061004.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/tolnet_o3_obs/obs_seq_tolnet_o3_2015061004.out ./obs_seq_TOL_O3_2015061004.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061004.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061004.out\',\'obs_seq_AIR_O3_2015061004.out\',\'obs_seq_TOL_O3_2015061004.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=12600 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=16200 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 1 52 49 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=12600 which is Gregorian day: 2015 Jun 10 03:30:00 Excluding observations after: day=151370, sec=16200 which is Gregorian day: 2015 Jun 10 04:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061004.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061004.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061004.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 2881 Number of obs really inserted : 2881 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061004.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 2881 Number of obs to be inserted : 929 Number of obs really inserted : 929 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 3810 Actual number of obs in the new seq file : 3810 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=12661 Gregorian day: 2015 Jun 10 03:31:01 Last obs time: day=151370, sec=16200 Gregorian day: 2015 Jun 10 04:30:00 Number of obs processed : 3810 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 35 obs RADIOSONDE_V_WIND_COMPONENT 35 obs RADIOSONDE_TEMPERATURE 34 obs RADIOSONDE_SPECIFIC_HUMIDITY 33 obs AIRCRAFT_U_WIND_COMPONENT 8 obs AIRCRAFT_V_WIND_COMPONENT 8 obs AIRCRAFT_TEMPERATURE 72 obs MARINE_SFC_U_WIND_COMPONENT 554 obs MARINE_SFC_V_WIND_COMPONENT 554 obs MARINE_SFC_TEMPERATURE 613 obs MARINE_SFC_SPECIFIC_HUMIDITY 158 obs LAND_SFC_U_WIND_COMPONENT 25 obs LAND_SFC_V_WIND_COMPONENT 25 obs LAND_SFC_TEMPERATURE 25 obs LAND_SFC_SPECIFIC_HUMIDITY 24 obs RADIOSONDE_SURFACE_ALTIMETER 1 obs MARINE_SFC_ALTIMETER 652 obs LAND_SFC_ALTIMETER 25 obs AIRNOW_O3 929 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 1 52 49 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061004.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12600, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/combine_obs/obs_seq_comb_2015061004.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 14400 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148113 + mv obs_seq.new obs_seq_comb_filtered_2015061004.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061005 + export CYCLE_DATE + [[ 2015061005 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061005 + export DATE + echo 2015061005 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061005 + YY=15 + export YY + cut -c5-6 + echo 2015061005 + MM=06 + export MM + cut -c7-8 + echo 2015061005 + DD=10 + export DD + cut -c9-10 + echo 2015061005 + HH=05 + export HH + DATE_SHORT=15061005 + export DATE_SHORT + FILE_DATE=2015-06-10_05:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -1 + 2> /dev/null + PAST_DATE=2015061004 + export PAST_DATE + cut -c1-4 + echo 2015061004 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061004 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061004 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061004 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061004 + PAST_HH=04 + export PAST_HH + PAST_FILE_DATE=2015-06-10_04:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + NEXT_DATE=2015061006 + export NEXT_DATE + cut -c1-4 + echo 2015061006 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061006 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061006 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061006 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061006 + NEXT_HH=06 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_06:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=05 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 05 + 0 )) + [[ 05 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=05 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 05 + 0 )) + D_DATE=2015061005 + export D_DATE + echo 2015061005 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 18000 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=18000 + export SEC_GREG + echo 2015061006 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 21600 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=21600 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100430 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100430 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100430 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100430 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100430 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100430 + ASIM_MIN_HH=04 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100530 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100530 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100530 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100530 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100530 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100530 + ASIM_MAX_HH=05 + export ASIM_MAX_HH + echo 201506100430 201506100430 + echo 201506100430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 16200 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=16200 + export ASIM_MIN_SEC_GREG + echo 201506100530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 19800 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=19800 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061005 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061005 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + END_DATE=2015061006 + export END_DATE + cut -c1-4 + echo 2015061005 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061005 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061005 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061005 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061005 + START_HOUR=05 + export START_HOUR + START_FILE_DATE=2015-06-10_05:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061006 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061006 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061006 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061006 + END_HOUR=06 + export END_HOUR + END_FILE_DATE=2015-06-10_06:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061004/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=05,05,05 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=06,06,06 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 16200 + (( temp[1]=16200+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=16201 + export NL_FIRST_OBS_SECONDS + echo 201506100530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 19800 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=19800 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061005 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=5 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=5 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=21600 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100430 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100530 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100430 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100430 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100430 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100430 + ASIM_MN_HH=04 + export ASIM_MN_HH + cut -c1-4 + echo 201506100530 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100530 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100530 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100530 + ASIM_MX_HH=05 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + E_DATE=2015061006 + export E_DATE + cut -c1-4 + echo 2015061006 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061006 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061006 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061006 + E_HH=06 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061005 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + cut -c1-4 + echo 2015061005 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061005 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061005 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061005 + L_START_HOUR=05 + export L_START_HOUR + cut -c1-4 + echo 2015061006 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061006 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061006 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061006 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + NL_START_HOUR=05,05,05 + export NL_START_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_END_HOUR=06,06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_END_DATE + P_DATE=2015061005 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_END_DATE=2015061006 + export P_END_DATE + [[ 2015061005 -le 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_05:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27764 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13945.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148114 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27778 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23225.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148115 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27791 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10692.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148116 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27819 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8510.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148117 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27832 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10654.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148118 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27845 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16183.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148119 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27873 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16656.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148120 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27886 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5089.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148121 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27900 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2636.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148122 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27927 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5493.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148123 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27940 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31727.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148124 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27954 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25617.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148125 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27982 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3960.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148126 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27995 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14391.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148127 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28009 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27369.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148128 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28036 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21700.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148129 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28049 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28289.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148130 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28063 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5640.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148131 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28090 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11705.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148132 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28103 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10515.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148133 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28117 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23180.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148134 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28144 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_360.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148135 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28158 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25293.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148136 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28171 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12934.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148137 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28198 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28751.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148138 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28212 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24039.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148139 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28225 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10679.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148140 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28252 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26760.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148141 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28266 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10472.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148142 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28279 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28173.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148143 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_06:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_06:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13945.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28768 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28873.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148154 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23225.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28782 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16613.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148155 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10692.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28795 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1191.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148156 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8510.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28823 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9454.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148157 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10654.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28837 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9860.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148158 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16183.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28851 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21462.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148159 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16656.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28878 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25807.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148160 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5089.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28892 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8637.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148161 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2636.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28905 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27340.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148162 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5493.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28933 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17728.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148163 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31727.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28947 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19919.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148164 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25617.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28960 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20725.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148165 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3960.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28988 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21703.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148166 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14391.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29001 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25133.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148167 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27369.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29015 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22753.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148168 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21700.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29042 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19287.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148169 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28289.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29056 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32099.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148170 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5640.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29070 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31392.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148171 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11705.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29097 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7878.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148172 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10515.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29112 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19743.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148173 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23180.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29125 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23124.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148174 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_360.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29154 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22670.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148175 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25293.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29168 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24441.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148176 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12934.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29181 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18929.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148177 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28751.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29209 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24102.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148178 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24039.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29222 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6544.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148179 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10679.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29236 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26897.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148180 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26760.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + bc -l + echo 10 '*' 100000 + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29264 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12176.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148181 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10472.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29277 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18655.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148182 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28173.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29295 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16879.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148183 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061006 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=23949 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29780 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30062.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148184 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=23949 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29991 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28258.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148185 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=23949 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30202 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_4180.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148186 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=23949 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30419 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31230.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148187 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=23949 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30632 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20390.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148188 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=23949 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30843 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_3639.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148189 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=23949 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31054 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_25824.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148190 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=23949 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31265 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16757.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148191 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=23949 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31480 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20138.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148192 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061004.out','obs_seq_AIR_O3_2015061004.out','obs_seq_TOL_O3_2015061004.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=23949 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31693 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16737.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148193 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + LE_DATE=2015061006 + export LE_DATE + [[ 2015061005 -le 2015061006 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_05:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_05:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_06:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_06:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061005 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148194 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=05 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_05:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_05:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 ./. + mv wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e000 + mv wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_d01_2015-06-10_05:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31834 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_05:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.31834 rm -f tmp.31834 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e000 set files = ( wrfinput_d01_2015-06-10_05:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31902 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.31902 rm -f tmp.31902 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.31902 rm -f tmp.31902 if ( wrfinput_d01_2015-06-10_05:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00.e000 echo wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01_2015-06-10_05:00:00.e000 ln -s wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01_2015-06-10_05:00:00 + mv wrfbdy_d01_2015-06-10_05:00:00.e000 wrfbdy_d01_2015-06-10_05:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=05 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31988 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_05:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.31988 rm -f tmp.31988 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e001 set files = ( wrfinput_d01_2015-06-10_05:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32055 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.32055 rm -f tmp.32055 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.32055 rm -f tmp.32055 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32137 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_05:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.32137 rm -f tmp.32137 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e002 set files = ( wrfinput_d01_2015-06-10_05:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32205 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.32205 rm -f tmp.32205 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.32205 rm -f tmp.32205 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32287 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_05:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.32287 rm -f tmp.32287 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e003 set files = ( wrfinput_d01_2015-06-10_05:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32354 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.32354 rm -f tmp.32354 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.32354 rm -f tmp.32354 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32436 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_05:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.32436 rm -f tmp.32436 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e004 set files = ( wrfinput_d01_2015-06-10_05:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32504 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.32504 rm -f tmp.32504 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.32504 rm -f tmp.32504 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32586 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_05:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.32586 rm -f tmp.32586 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e005 set files = ( wrfinput_d01_2015-06-10_05:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32654 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.32654 rm -f tmp.32654 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.32654 rm -f tmp.32654 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32736 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_05:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.32736 rm -f tmp.32736 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e006 set files = ( wrfinput_d01_2015-06-10_05:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.340 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.340 rm -f tmp.340 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.340 rm -f tmp.340 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.422 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_05:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.422 rm -f tmp.422 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e007 set files = ( wrfinput_d01_2015-06-10_05:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.491 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.491 rm -f tmp.491 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.491 rm -f tmp.491 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.636 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_05:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.636 rm -f tmp.636 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e008 set files = ( wrfinput_d01_2015-06-10_05:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.742 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.742 rm -f tmp.742 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.742 rm -f tmp.742 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.861 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_05:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.861 rm -f tmp.861 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e009 set files = ( wrfinput_d01_2015-06-10_05:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.928 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.928 rm -f tmp.928 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.928 rm -f tmp.928 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.1010 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.1010 rm -f tmp.1010 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e010 set files = ( wrfinput_d01_2015-06-10_05:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.1078 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.1078 rm -f tmp.1078 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.1078 rm -f tmp.1078 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148195 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=05 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_05:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 ./. + mv wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02_2015-06-10_05:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1194 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_05:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.1194 rm -f tmp.1194 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e000 set files = ( wrfinput_d02_2015-06-10_05:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_05:00:00.e000 wrfinput_d02_2015-06-10_05:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=05 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1269 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_05:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.1269 rm -f tmp.1269 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e001 set files = ( wrfinput_d02_2015-06-10_05:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1341 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_05:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.1341 rm -f tmp.1341 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e002 set files = ( wrfinput_d02_2015-06-10_05:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1413 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_05:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.1413 rm -f tmp.1413 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e003 set files = ( wrfinput_d02_2015-06-10_05:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1485 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_05:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.1485 rm -f tmp.1485 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e004 set files = ( wrfinput_d02_2015-06-10_05:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1558 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_05:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.1558 rm -f tmp.1558 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e005 set files = ( wrfinput_d02_2015-06-10_05:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1630 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_05:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.1630 rm -f tmp.1630 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e006 set files = ( wrfinput_d02_2015-06-10_05:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1702 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_05:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.1702 rm -f tmp.1702 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e007 set files = ( wrfinput_d02_2015-06-10_05:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1774 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_05:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.1774 rm -f tmp.1774 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e008 set files = ( wrfinput_d02_2015-06-10_05:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1847 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_05:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.1847 rm -f tmp.1847 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e009 set files = ( wrfinput_d02_2015-06-10_05:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1920 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.1920 rm -f tmp.1920 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e010 set files = ( wrfinput_d02_2015-06-10_05:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148196 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=05 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_05:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfinput_d03_2015-06-10_05:00:00 ./. + mv wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03_2015-06-10_05:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2052 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_05:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.2052 rm -f tmp.2052 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e000 set files = ( wrfinput_d03_2015-06-10_05:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_05:00:00.e000 wrfinput_d03_2015-06-10_05:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=05 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2128 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_05:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.2128 rm -f tmp.2128 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e001 set files = ( wrfinput_d03_2015-06-10_05:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2200 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_05:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.2200 rm -f tmp.2200 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e002 set files = ( wrfinput_d03_2015-06-10_05:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2280 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_05:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.2280 rm -f tmp.2280 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e003 set files = ( wrfinput_d03_2015-06-10_05:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2355 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_05:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.2355 rm -f tmp.2355 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e004 set files = ( wrfinput_d03_2015-06-10_05:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2434 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_05:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.2434 rm -f tmp.2434 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e005 set files = ( wrfinput_d03_2015-06-10_05:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2511 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_05:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.2511 rm -f tmp.2511 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e006 set files = ( wrfinput_d03_2015-06-10_05:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2618 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_05:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.2618 rm -f tmp.2618 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e007 set files = ( wrfinput_d03_2015-06-10_05:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2704 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_05:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.2704 rm -f tmp.2704 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e008 set files = ( wrfinput_d03_2015-06-10_05:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2781 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_05:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.2781 rm -f tmp.2781 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e009 set files = ( wrfinput_d03_2015-06-10_05:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2857 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.2857 rm -f tmp.2857 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e010 set files = ( wrfinput_d03_2015-06-10_05:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_d01_2015-06-10_05:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02_2015-06-10_05:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/real/wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03_2015-06-10_05:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e001 wrfbdy_d01_2015-06-10_05:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e001 wrfinput_d02_2015-06-10_05:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e001 wrfinput_d03_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e002 wrfbdy_d01_2015-06-10_05:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e002 wrfinput_d02_2015-06-10_05:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e002 wrfinput_d03_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e003 wrfbdy_d01_2015-06-10_05:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e003 wrfinput_d02_2015-06-10_05:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e003 wrfinput_d03_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e004 wrfbdy_d01_2015-06-10_05:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e004 wrfinput_d02_2015-06-10_05:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e004 wrfinput_d03_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e005 wrfbdy_d01_2015-06-10_05:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e005 wrfinput_d02_2015-06-10_05:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e005 wrfinput_d03_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e006 wrfbdy_d01_2015-06-10_05:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e006 wrfinput_d02_2015-06-10_05:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e006 wrfinput_d03_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e007 wrfbdy_d01_2015-06-10_05:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e007 wrfinput_d02_2015-06-10_05:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e007 wrfinput_d03_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e008 wrfbdy_d01_2015-06-10_05:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e008 wrfinput_d02_2015-06-10_05:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e008 wrfinput_d03_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e009 wrfbdy_d01_2015-06-10_05:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e009 wrfinput_d02_2015-06-10_05:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e009 wrfinput_d03_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e010 wrfbdy_d01_2015-06-10_05:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e010 wrfinput_d02_2015-06-10_05:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e010 wrfinput_d03_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + LE_DATE=2015061006 + export LE_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061005 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_05:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3511 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_27325.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148197 + WRFCHEMI=wrfchemi_d02_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_05:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3570 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_18847.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148198 + WRFCHEMI=wrfchemi_d03_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_05:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3635 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_4484.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148199 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061005 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_05:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_06:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_06:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3992 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_14052.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148200 + WRFCHEMI=wrfchemi_d02_2015-06-10_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_05:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_06:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_06:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4050 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_14505.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148201 + WRFCHEMI=wrfchemi_d03_2015-06-10_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_05:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_06:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_06:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4116 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_20265.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148202 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_05:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_05:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_05:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 05 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=05 + export L_HH + D_DATE=2015061005 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=05 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=05 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=04 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=05 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061005.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061005.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 05 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=05 + export L_HH + D_DATE=2015061005 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=05 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=05 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=04 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=05 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061005.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061005.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/prepbufr_met_obs/obs_seq_prep_2015061005.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/prepbufr_met_obs/obs_seq_prep_2015061005.out ./obs_seq_MET_2015061005.out + FILE_LIST[1]=obs_seq_MET_2015061005.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/airnow_o3_obs/obs_seq_airnow_o3_2015061005.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/airnow_o3_obs/obs_seq_airnow_o3_2015061005.out ./obs_seq_AIR_O3_2015061005.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061005.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/tolnet_o3_obs/obs_seq_tolnet_o3_2015061005.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/tolnet_o3_obs/obs_seq_tolnet_o3_2015061005.out ./obs_seq_TOL_O3_2015061005.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061005.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061005.out\',\'obs_seq_AIR_O3_2015061005.out\',\'obs_seq_TOL_O3_2015061005.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=16200 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=19800 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 2 14 55 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=16200 which is Gregorian day: 2015 Jun 10 04:30:00 Excluding observations after: day=151370, sec=19800 which is Gregorian day: 2015 Jun 10 05:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061005.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061005.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061005.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 16838 Number of obs really inserted : 16838 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061005.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 16838 Number of obs to be inserted : 916 Number of obs really inserted : 916 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 17754 Actual number of obs in the new seq file : 17754 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=16261 Gregorian day: 2015 Jun 10 04:31:01 Last obs time: day=151370, sec=19800 Gregorian day: 2015 Jun 10 05:30:00 Number of obs processed : 17754 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 43 obs RADIOSONDE_V_WIND_COMPONENT 43 obs RADIOSONDE_TEMPERATURE 35 obs RADIOSONDE_SPECIFIC_HUMIDITY 34 obs AIRCRAFT_U_WIND_COMPONENT 5 obs AIRCRAFT_V_WIND_COMPONENT 5 obs AIRCRAFT_TEMPERATURE 52 obs MARINE_SFC_U_WIND_COMPONENT 555 obs MARINE_SFC_V_WIND_COMPONENT 555 obs MARINE_SFC_TEMPERATURE 610 obs MARINE_SFC_SPECIFIC_HUMIDITY 155 obs LAND_SFC_U_WIND_COMPONENT 25 obs LAND_SFC_V_WIND_COMPONENT 25 obs LAND_SFC_TEMPERATURE 25 obs LAND_SFC_SPECIFIC_HUMIDITY 23 obs SAT_U_WIND_COMPONENT 6986 obs SAT_V_WIND_COMPONENT 6986 obs RADIOSONDE_SURFACE_ALTIMETER 1 obs MARINE_SFC_ALTIMETER 650 obs LAND_SFC_ALTIMETER 25 obs AIRNOW_O3 916 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 2 14 55 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061005.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16200, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/combine_obs/obs_seq_comb_2015061005.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 18000 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148213 + mv obs_seq.new obs_seq_comb_filtered_2015061005.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061006 + export CYCLE_DATE + [[ 2015061006 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061006 + export DATE + echo 2015061006 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061006 + YY=15 + export YY + cut -c5-6 + echo 2015061006 + MM=06 + export MM + cut -c7-8 + echo 2015061006 + DD=10 + export DD + cut -c9-10 + echo 2015061006 + HH=06 + export HH + DATE_SHORT=15061006 + export DATE_SHORT + FILE_DATE=2015-06-10_06:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -1 + 2> /dev/null + PAST_DATE=2015061005 + export PAST_DATE + cut -c1-4 + echo 2015061005 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061005 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061005 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061005 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061005 + PAST_HH=05 + export PAST_HH + PAST_FILE_DATE=2015-06-10_05:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + NEXT_DATE=2015061007 + export NEXT_DATE + cut -c1-4 + echo 2015061007 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061007 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061007 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061007 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061007 + NEXT_HH=07 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_07:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=06 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 06 + 0 )) + [[ 06 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=06 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 06 + 0 )) + D_DATE=2015061006 + export D_DATE + echo 2015061006 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 21600 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=21600 + export SEC_GREG + echo 2015061007 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 25200 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=25200 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100530 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100530 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100530 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100530 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100530 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100530 + ASIM_MIN_HH=05 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100630 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100630 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100630 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100630 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100630 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100630 + ASIM_MAX_HH=06 + export ASIM_MAX_HH + echo 201506100530 201506100530 + echo 201506100530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 19800 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=19800 + export ASIM_MIN_SEC_GREG + echo 201506100630 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 23400 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=23400 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061006 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061006 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + END_DATE=2015061007 + export END_DATE + cut -c1-4 + echo 2015061006 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061006 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061006 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061006 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061006 + START_HOUR=06 + export START_HOUR + START_FILE_DATE=2015-06-10_06:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061007 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061007 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061007 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061007 + END_HOUR=07 + export END_HOUR + END_FILE_DATE=2015-06-10_07:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061005/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=06,06,06 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=07,07,07 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_06:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 19800 + (( temp[1]=19800+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=19801 + export NL_FIRST_OBS_SECONDS + echo 201506100630 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 23400 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=23400 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061006 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=6 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=6 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=25200 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100530 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100630 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100530 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100530 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100530 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100530 + ASIM_MN_HH=05 + export ASIM_MN_HH + cut -c1-4 + echo 201506100630 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100630 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100630 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100630 + ASIM_MX_HH=06 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + E_DATE=2015061007 + export E_DATE + cut -c1-4 + echo 2015061007 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061007 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061007 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061007 + E_HH=07 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061006 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + cut -c1-4 + echo 2015061006 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061006 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061006 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061006 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061007 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061007 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061007 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061007 + L_END_HOUR=07 + export L_END_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_START_HOUR=06,06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061007 + cut -c1-4 + echo 2015061007 + cut -c1-4 + echo 2015061007 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061007 + cut -c5-6 + echo 2015061007 + cut -c5-6 + echo 2015061007 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061007 + cut -c7-8 + echo 2015061007 + cut -c7-8 + echo 2015061007 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061007 + cut -c9-10 + echo 2015061007 + cut -c9-10 + echo 2015061007 + NL_END_HOUR=07,07,07 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_07:00:00\',\'2015-06-10_07:00:00\',\'2015-06-10_07:00:00\'' + export NL_END_DATE + P_DATE=2015061006 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_END_DATE=2015061007 + export P_END_DATE + [[ 2015061006 -le 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_06:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_06:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6704 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20198.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148254 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6776 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12552.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148255 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6790 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11329.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148256 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6817 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27589.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148257 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6831 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3443.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148258 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6844 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6644.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148259 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6871 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7536.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148260 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6885 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1363.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148261 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6898 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20599.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148262 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6925 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23294.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148263 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6939 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17175.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148264 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6952 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22110.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148265 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6980 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7602.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148266 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6993 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24542.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148267 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7006 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32687.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148268 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7034 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10941.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148269 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7047 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26402.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148270 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7060 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_399.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148271 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7088 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22520.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148272 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7101 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14270.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148273 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7114 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10526.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148274 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7142 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3804.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148275 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7155 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15720.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148276 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7168 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24553.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148277 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7196 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30064.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148278 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7210 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14117.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148279 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7223 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16267.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148280 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7252 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11509.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148281 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7265 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31123.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148282 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7278 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_548.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148283 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_07:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_06:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_07:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20198.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8500 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12550.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148286 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12552.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8514 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20410.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148287 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11329.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8528 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9172.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148288 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27589.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8555 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30190.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148289 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3443.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8569 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17196.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148290 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6644.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8582 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13431.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148291 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7536.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8610 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23121.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148292 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1363.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8624 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10862.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148293 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20599.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8637 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20878.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148294 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23294.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8665 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26754.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148295 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17175.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8679 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8322.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148296 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22110.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8692 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14565.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148297 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7602.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8720 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6448.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148298 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24542.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8734 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6359.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148299 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32687.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8747 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2021.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148300 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10941.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8775 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23147.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148301 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26402.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8788 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14621.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148302 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_399.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8802 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3012.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148303 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22520.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8830 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1980.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148304 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14270.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8843 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4517.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148305 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10526.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8857 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29315.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148306 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3804.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8884 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28762.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148307 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15720.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8898 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32320.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148308 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24553.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8911 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7366.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148309 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30064.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8939 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_655.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148310 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14117.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8952 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8978.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148311 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16267.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8966 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14831.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148312 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11509.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + [[ 06 -ge 00 ]] + [[ 06 -lt 06 ]] + [[ 06 -ge 06 ]] + [[ 06 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8993 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5573.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148313 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31123.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9007 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4945.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148314 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_548.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9020 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7679.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148315 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_DATE=2015061008 + export P_DATE + [[ 2015061008 -le 2015061007 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=23949 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9340 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_14061.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148346 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=23949 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9552 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9577.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148347 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=23949 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9763 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11050.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148348 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=23949 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9974 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15615.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148349 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=23949 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10186 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_70.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148350 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=23949 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10524 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27811.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148351 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=23949 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10736 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19486.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148352 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=23949 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10949 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6599.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148358 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=23949 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11160 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_22612.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148367 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061005.out','obs_seq_AIR_O3_2015061005.out','obs_seq_TOL_O3_2015061005.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19801, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + TRANDOM=23949 + [[ 2015061006 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + NEXT_L_DATE=2015061007 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_07:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11371 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_544.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148376 + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -lt 2015061007 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfinput_d03_2015-06-10_06:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfinput_d03_2015-06-10_06:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + LE_DATE=2015061007 + export LE_DATE + [[ 2015061006 -le 2015061007 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_06:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_06:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_07:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_07:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_07:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_07:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148386 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=06 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_06:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_06:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 ./. + mv wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e000 + mv wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_d01_2015-06-10_06:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11513 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_06:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.11513 rm -f tmp.11513 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e000 set files = ( wrfinput_d01_2015-06-10_06:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11581 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.11581 rm -f tmp.11581 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.11581 rm -f tmp.11581 if ( wrfinput_d01_2015-06-10_06:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00.e000 echo wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01_2015-06-10_06:00:00.e000 ln -s wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01_2015-06-10_06:00:00 + mv wrfbdy_d01_2015-06-10_06:00:00.e000 wrfbdy_d01_2015-06-10_06:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=06 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11666 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_06:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.11666 rm -f tmp.11666 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e001 set files = ( wrfinput_d01_2015-06-10_06:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11734 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.11734 rm -f tmp.11734 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.11734 rm -f tmp.11734 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11816 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_06:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.11816 rm -f tmp.11816 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e002 set files = ( wrfinput_d01_2015-06-10_06:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11884 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.11884 rm -f tmp.11884 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.11884 rm -f tmp.11884 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11967 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_06:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.11967 rm -f tmp.11967 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e003 set files = ( wrfinput_d01_2015-06-10_06:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12034 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.12034 rm -f tmp.12034 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.12034 rm -f tmp.12034 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12116 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_06:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.12116 rm -f tmp.12116 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e004 set files = ( wrfinput_d01_2015-06-10_06:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12184 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.12184 rm -f tmp.12184 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.12184 rm -f tmp.12184 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12267 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_06:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.12267 rm -f tmp.12267 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e005 set files = ( wrfinput_d01_2015-06-10_06:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12335 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.12335 rm -f tmp.12335 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.12335 rm -f tmp.12335 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12417 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_06:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.12417 rm -f tmp.12417 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e006 set files = ( wrfinput_d01_2015-06-10_06:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12484 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.12484 rm -f tmp.12484 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.12484 rm -f tmp.12484 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12566 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_06:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.12566 rm -f tmp.12566 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e007 set files = ( wrfinput_d01_2015-06-10_06:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12634 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.12634 rm -f tmp.12634 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.12634 rm -f tmp.12634 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12716 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_06:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.12716 rm -f tmp.12716 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e008 set files = ( wrfinput_d01_2015-06-10_06:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12783 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.12783 rm -f tmp.12783 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.12783 rm -f tmp.12783 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12865 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_06:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.12865 rm -f tmp.12865 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e009 set files = ( wrfinput_d01_2015-06-10_06:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12933 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.12933 rm -f tmp.12933 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.12933 rm -f tmp.12933 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.13015 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.13015 rm -f tmp.13015 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e010 set files = ( wrfinput_d01_2015-06-10_06:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.13083 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.13083 rm -f tmp.13083 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.13083 rm -f tmp.13083 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148392 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=06 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_06:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfinput_d02_2015-06-10_06:00:00 ./. + mv wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02_2015-06-10_06:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13203 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_06:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.13203 rm -f tmp.13203 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_06:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_06:00:00.e000 set files = ( wrfinput_d02_2015-06-10_06:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_06:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_06:00:00.e000 wrfinput_d02_2015-06-10_06:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=06 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_06:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13277 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_06:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.13277 rm -f tmp.13277 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_06:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_06:00:00.e001 set files = ( wrfinput_d02_2015-06-10_06:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_06:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_06:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13349 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_06:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.13349 rm -f tmp.13349 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_06:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_06:00:00.e002 set files = ( wrfinput_d02_2015-06-10_06:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_06:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_06:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13421 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_06:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.13421 rm -f tmp.13421 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_06:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_06:00:00.e003 set files = ( wrfinput_d02_2015-06-10_06:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_06:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_06:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13594 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_06:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.13594 rm -f tmp.13594 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_06:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_06:00:00.e004 set files = ( wrfinput_d02_2015-06-10_06:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_06:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_06:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13690 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_06:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.13690 rm -f tmp.13690 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_06:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_06:00:00.e005 set files = ( wrfinput_d02_2015-06-10_06:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_06:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_06:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13762 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_06:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.13762 rm -f tmp.13762 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_06:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_06:00:00.e006 set files = ( wrfinput_d02_2015-06-10_06:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_06:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_06:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13835 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_06:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.13835 rm -f tmp.13835 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_06:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_06:00:00.e007 set files = ( wrfinput_d02_2015-06-10_06:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_06:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_06:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13907 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_06:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.13907 rm -f tmp.13907 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_06:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_06:00:00.e008 set files = ( wrfinput_d02_2015-06-10_06:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_06:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_06:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13979 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_06:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.13979 rm -f tmp.13979 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_06:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_06:00:00.e009 set files = ( wrfinput_d02_2015-06-10_06:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_06:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_06:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.14051 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.14051 rm -f tmp.14051 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_06:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_06:00:00.e010 set files = ( wrfinput_d02_2015-06-10_06:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_06:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_06:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_06:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_06:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148406 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=06 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_06:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfinput_d03_2015-06-10_06:00:00 ./. + mv wrfinput_d03_2015-06-10_06:00:00 wrfinput_d03_2015-06-10_06:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14158 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_06:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.14158 rm -f tmp.14158 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_06:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_06:00:00.e000 set files = ( wrfinput_d03_2015-06-10_06:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_06:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_06:00:00.e000 wrfinput_d03_2015-06-10_06:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=06 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_06:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14232 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_06:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.14232 rm -f tmp.14232 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_06:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_06:00:00.e001 set files = ( wrfinput_d03_2015-06-10_06:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_06:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_06:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14304 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_06:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.14304 rm -f tmp.14304 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_06:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_06:00:00.e002 set files = ( wrfinput_d03_2015-06-10_06:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_06:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_06:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14376 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_06:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.14376 rm -f tmp.14376 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_06:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_06:00:00.e003 set files = ( wrfinput_d03_2015-06-10_06:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_06:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_06:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14448 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_06:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.14448 rm -f tmp.14448 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_06:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_06:00:00.e004 set files = ( wrfinput_d03_2015-06-10_06:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_06:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_06:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14521 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_06:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.14521 rm -f tmp.14521 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_06:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_06:00:00.e005 set files = ( wrfinput_d03_2015-06-10_06:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_06:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_06:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14594 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_06:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.14594 rm -f tmp.14594 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_06:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_06:00:00.e006 set files = ( wrfinput_d03_2015-06-10_06:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_06:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_06:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14667 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_06:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.14667 rm -f tmp.14667 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_06:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_06:00:00.e007 set files = ( wrfinput_d03_2015-06-10_06:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_06:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_06:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14739 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_06:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.14739 rm -f tmp.14739 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_06:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_06:00:00.e008 set files = ( wrfinput_d03_2015-06-10_06:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_06:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_06:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14811 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_06:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.14811 rm -f tmp.14811 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_06:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_06:00:00.e009 set files = ( wrfinput_d03_2015-06-10_06:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_06:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_06:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14883 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.14883 rm -f tmp.14883 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_06:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_06:00:00.e010 set files = ( wrfinput_d03_2015-06-10_06:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_06:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_06:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_06:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_06:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_d01_2015-06-10_06:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_06:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02_2015-06-10_06:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_06:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/real/wrfinput_d03_2015-06-10_06:00:00 wrfinput_d03_2015-06-10_06:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e001 wrfbdy_d01_2015-06-10_06:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_06:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e001 wrfinput_d02_2015-06-10_06:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_06:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e001 wrfinput_d03_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e002 wrfbdy_d01_2015-06-10_06:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_06:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e002 wrfinput_d02_2015-06-10_06:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_06:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e002 wrfinput_d03_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e003 wrfbdy_d01_2015-06-10_06:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_06:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e003 wrfinput_d02_2015-06-10_06:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_06:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e003 wrfinput_d03_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e004 wrfbdy_d01_2015-06-10_06:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_06:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e004 wrfinput_d02_2015-06-10_06:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_06:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e004 wrfinput_d03_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e005 wrfbdy_d01_2015-06-10_06:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_06:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e005 wrfinput_d02_2015-06-10_06:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_06:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e005 wrfinput_d03_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e006 wrfbdy_d01_2015-06-10_06:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_06:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e006 wrfinput_d02_2015-06-10_06:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_06:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e006 wrfinput_d03_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e007 wrfbdy_d01_2015-06-10_06:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_06:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e007 wrfinput_d02_2015-06-10_06:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_06:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e007 wrfinput_d03_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e008 wrfbdy_d01_2015-06-10_06:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_06:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e008 wrfinput_d02_2015-06-10_06:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_06:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e008 wrfinput_d03_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e009 wrfbdy_d01_2015-06-10_06:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_06:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e009 wrfinput_d02_2015-06-10_06:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_06:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e009 wrfinput_d03_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e010 wrfbdy_d01_2015-06-10_06:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_06:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d02_2015-06-10_06:00:00.e010 wrfinput_d02_2015-06-10_06:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_06:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_met_ic/wrfinput_d03_2015-06-10_06:00:00.e010 wrfinput_d03_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + LE_DATE=2015061007 + export LE_DATE + [[ 2015061006 -le 2015061007 ]] + echo 2015061006 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061006 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_06:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_06:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15495 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_12499.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148427 + WRFCHEMI=wrfchemi_d02_2015-06-10_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_06:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_06:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15551 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_18521.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148430 + WRFCHEMI=wrfchemi_d03_2015-06-10_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_06:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_06:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_06:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15609 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_32648.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148434 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061007 ]] + echo 2015061007 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061006 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_07:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_07:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_07:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_07:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_07:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_07:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15841 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_17783.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148436 + WRFCHEMI=wrfchemi_d02_2015-06-10_07:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_07:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_07:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_07:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_07:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_07:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15897 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_15037.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148437 + WRFCHEMI=wrfchemi_d03_2015-06-10_07:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_07:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_07:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_06:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_07:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_07:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_07:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16082 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_696.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148438 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061007 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_06:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_06:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 06 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=06 + export L_HH + D_DATE=2015061006 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=06 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=06 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=05 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=06 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061006.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061006.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 06 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=06 + export L_HH + D_DATE=2015061006 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=06 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=06 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=05 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=06 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061006.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061006.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/prepbufr_met_obs/obs_seq_prep_2015061006.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/prepbufr_met_obs/obs_seq_prep_2015061006.out ./obs_seq_MET_2015061006.out + FILE_LIST[1]=obs_seq_MET_2015061006.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/airnow_o3_obs/obs_seq_airnow_o3_2015061006.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/airnow_o3_obs/obs_seq_airnow_o3_2015061006.out ./obs_seq_AIR_O3_2015061006.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061006.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/tolnet_o3_obs/obs_seq_tolnet_o3_2015061006.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/tolnet_o3_obs/obs_seq_tolnet_o3_2015061006.out ./obs_seq_TOL_O3_2015061006.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061006.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061006.out\',\'obs_seq_AIR_O3_2015061006.out\',\'obs_seq_TOL_O3_2015061006.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=19800 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=23400 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 2 48 11 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=19800 which is Gregorian day: 2015 Jun 10 05:30:00 Excluding observations after: day=151370, sec=23400 which is Gregorian day: 2015 Jun 10 06:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061006.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061006.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061006.out inserted number 20000 of 20463 -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 20463 Number of obs really inserted : 20463 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061006.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 20463 Number of obs to be inserted : 892 Number of obs really inserted : 892 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 21355 Actual number of obs in the new seq file : 21355 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=19861 Gregorian day: 2015 Jun 10 05:31:01 Last obs time: day=151370, sec=23400 Gregorian day: 2015 Jun 10 06:30:00 Number of obs processed : 21355 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 300 obs RADIOSONDE_V_WIND_COMPONENT 300 obs RADIOSONDE_TEMPERATURE 231 obs RADIOSONDE_SPECIFIC_HUMIDITY 225 obs AIRCRAFT_U_WIND_COMPONENT 2 obs AIRCRAFT_V_WIND_COMPONENT 2 obs AIRCRAFT_TEMPERATURE 35 obs MARINE_SFC_U_WIND_COMPONENT 575 obs MARINE_SFC_V_WIND_COMPONENT 575 obs MARINE_SFC_TEMPERATURE 635 obs MARINE_SFC_SPECIFIC_HUMIDITY 170 obs LAND_SFC_U_WIND_COMPONENT 407 obs LAND_SFC_V_WIND_COMPONENT 407 obs LAND_SFC_TEMPERATURE 415 obs LAND_SFC_SPECIFIC_HUMIDITY 393 obs SAT_U_WIND_COMPONENT 7345 obs SAT_V_WIND_COMPONENT 7345 obs RADIOSONDE_SURFACE_ALTIMETER 5 obs MARINE_SFC_ALTIMETER 679 obs LAND_SFC_ALTIMETER 417 obs AIRNOW_O3 892 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 2 48 11 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061006.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_06:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_06:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_06:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_06:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 19800, last_obs_days = 151370, last_obs_seconds = 23400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 25200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/combine_obs/obs_seq_comb_2015061006.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 21600 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148439 + mv obs_seq.new obs_seq_comb_filtered_2015061006.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061007 + export CYCLE_DATE + [[ 2015061007 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061007 + export DATE + echo 2015061007 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061007 + YY=15 + export YY + cut -c5-6 + echo 2015061007 + MM=06 + export MM + cut -c7-8 + echo 2015061007 + DD=10 + export DD + cut -c9-10 + echo 2015061007 + HH=07 + export HH + DATE_SHORT=15061007 + export DATE_SHORT + FILE_DATE=2015-06-10_07:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 -1 + 2> /dev/null + PAST_DATE=2015061006 + export PAST_DATE + cut -c1-4 + echo 2015061006 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061006 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061006 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061006 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061006 + PAST_HH=06 + export PAST_HH + PAST_FILE_DATE=2015-06-10_06:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + NEXT_DATE=2015061008 + export NEXT_DATE + cut -c1-4 + echo 2015061008 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061008 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061008 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061008 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061008 + NEXT_HH=08 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_08:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=07 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 07 + 0 )) + [[ 07 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=07 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 07 + 0 )) + D_DATE=2015061007 + export D_DATE + echo 2015061007 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 25200 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=25200 + export SEC_GREG + echo 2015061008 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 28800 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=28800 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100630 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100630 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100630 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100630 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100630 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100630 + ASIM_MIN_HH=06 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100730 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100730 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100730 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100730 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100730 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100730 + ASIM_MAX_HH=07 + export ASIM_MAX_HH + echo 201506100630 201506100630 + echo 201506100630 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 23400 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=23400 + export ASIM_MIN_SEC_GREG + echo 201506100730 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 27000 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=27000 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061007 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061007 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + END_DATE=2015061008 + export END_DATE + cut -c1-4 + echo 2015061007 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061007 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061007 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061007 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061007 + START_HOUR=07 + export START_HOUR + START_FILE_DATE=2015-06-10_07:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061008 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061008 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061008 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061008 + END_HOUR=08 + export END_HOUR + END_FILE_DATE=2015-06-10_08:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061006/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=07,07,07 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=08,08,08 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_06:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_07:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100630 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 23400 + (( temp[1]=23400+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=23401 + export NL_FIRST_OBS_SECONDS + echo 201506100730 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 27000 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=27000 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061007 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=7 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=7 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=28800 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100630 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100730 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100630 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100630 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100630 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100630 + ASIM_MN_HH=06 + export ASIM_MN_HH + cut -c1-4 + echo 201506100730 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100730 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100730 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100730 + ASIM_MX_HH=07 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + E_DATE=2015061008 + export E_DATE + cut -c1-4 + echo 2015061008 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061008 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061008 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061008 + E_HH=08 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061007 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + cut -c1-4 + echo 2015061007 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061007 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061007 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061007 + L_START_HOUR=07 + export L_START_HOUR + cut -c1-4 + echo 2015061008 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061008 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061008 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061008 + L_END_HOUR=08 + export L_END_HOUR + cut -c1-4 + echo 2015061007 + cut -c1-4 + echo 2015061007 + cut -c1-4 + echo 2015061007 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061007 + cut -c5-6 + echo 2015061007 + cut -c5-6 + echo 2015061007 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061007 + cut -c7-8 + echo 2015061007 + cut -c7-8 + echo 2015061007 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061007 + cut -c9-10 + echo 2015061007 + cut -c9-10 + echo 2015061007 + NL_START_HOUR=07,07,07 + export NL_START_HOUR + cut -c1-4 + echo 2015061008 + cut -c1-4 + echo 2015061008 + cut -c1-4 + echo 2015061008 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061008 + cut -c5-6 + echo 2015061008 + cut -c5-6 + echo 2015061008 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061008 + cut -c7-8 + echo 2015061008 + cut -c7-8 + echo 2015061008 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061008 + cut -c9-10 + echo 2015061008 + cut -c9-10 + echo 2015061008 + NL_END_HOUR=08,08,08 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_07:00:00\',\'2015-06-10_07:00:00\',\'2015-06-10_07:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_08:00:00\',\'2015-06-10_08:00:00\',\'2015-06-10_08:00:00\'' + export NL_END_DATE + P_DATE=2015061007 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_END_DATE=2015061008 + export P_END_DATE + [[ 2015061007 -le 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_07:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_06:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_07:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17867 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4570.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148440 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17880 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17904.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148441 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17894 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22367.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148442 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17921 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31362.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148443 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17935 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10463.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148444 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17948 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3983.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148445 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17976 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8700.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148446 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17990 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30373.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148447 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18003 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12827.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148448 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18030 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32052.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148449 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18044 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31243.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148450 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18057 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19286.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148451 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18084 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4541.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148452 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18098 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5569.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148453 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18111 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16379.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148454 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18139 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20816.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148455 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18152 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25908.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148456 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18165 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22580.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148457 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18193 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8060.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148458 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18206 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24668.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148459 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18219 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26685.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148460 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18247 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15440.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148461 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18260 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8645.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148462 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18273 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15605.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148463 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18301 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10898.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148464 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18314 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29041.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148465 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18327 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11664.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148466 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18355 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16084.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148467 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18368 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2798.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148468 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_07:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_07:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:30:00', / &wrfvar22 time_window_max = '2015-06-10_07:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_07:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18381 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31227.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148469 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_07:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_07:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_07:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_DATE=2015061008 + export P_DATE + [[ 2015061008 -le 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_08:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_07:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_08:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4570.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18658 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31912.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148471 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17904.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18672 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30954.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148473 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22367.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18686 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19162.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148474 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31362.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18713 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17405.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148475 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10463.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18727 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22278.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148476 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3983.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18741 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25767.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148477 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8700.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18768 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26000.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148478 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30373.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18782 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7459.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148479 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12827.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18795 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17890.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148480 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32052.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18823 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13630.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148481 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31243.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18837 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19203.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148482 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19286.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18851 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2140.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148483 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4541.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18879 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31706.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148484 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5569.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18892 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8524.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148485 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16379.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18906 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27375.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148486 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20816.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18933 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9860.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148487 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25908.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18947 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19447.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148488 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22580.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18961 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24568.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148489 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8060.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=18988 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6643.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148490 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24668.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19003 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26636.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148491 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26685.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19016 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18240.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148492 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15440.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19044 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13867.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148493 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8645.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19057 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31055.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148494 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15605.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19071 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18297.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148495 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10898.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19098 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18628.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148496 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29041.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19112 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28367.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148497 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11664.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19125 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32689.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148498 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16084.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -f hhddmmyycc + NL_SEED_ARRAY1=0710061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061007 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + [[ 07 -ge 00 ]] + [[ 07 -lt 06 ]] + [[ 07 -ge 06 ]] + [[ 07 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19153 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24387.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148499 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2798.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19167 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22868.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148500 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31227.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0710061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 07,07,07, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 08,08,08, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=19180 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5273.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148501 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061008 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=23949 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=19482 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27716.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148502 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=23949 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=19693 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2859.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148503 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=23949 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20032 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2469.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148504 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=23949 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20243 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_17026.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148505 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=23949 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20456 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_25079.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148506 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=23949 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20667 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18800.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148507 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=23949 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20878 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30995.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148508 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=23949 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21096 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_334.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148509 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=23949 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21307 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12795.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148510 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23401, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_END_DATE=2015061008 + export L_END_DATE + TRANDOM=23949 + [[ 2015061007 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + NEXT_L_DATE=2015061008 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_08:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21518 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8945.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148511 + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -lt 2015061008 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_07:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_07:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfinput_d02_2015-06-10_07:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfinput_d03_2015-06-10_07:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfinput_d02_2015-06-10_07:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfinput_d03_2015-06-10_07:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + LE_DATE=2015061008 + export LE_DATE + [[ 2015061007 -le 2015061008 ]] + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_07:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_07:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_07:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_07:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_08:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_08:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_08:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_08:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061007 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148594 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=07 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_07:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_07:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfinput_d01_2015-06-10_07:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 ./. + mv wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e000 + mv wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_d01_2015-06-10_07:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21655 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_07:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.21655 rm -f tmp.21655 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e000 set files = ( wrfinput_d01_2015-06-10_07:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21723 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.21723 rm -f tmp.21723 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.21723 rm -f tmp.21723 if ( wrfinput_d01_2015-06-10_07:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00.e000 echo wrfinput_d01_2015-06-10_07:00:00.e000 wrfinput_d01_2015-06-10_07:00:00.e000 ln -s wrfinput_d01_2015-06-10_07:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_07:00:00.e000 wrfinput_d01_2015-06-10_07:00:00 + mv wrfbdy_d01_2015-06-10_07:00:00.e000 wrfbdy_d01_2015-06-10_07:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=07 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21808 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_07:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.21808 rm -f tmp.21808 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e001 set files = ( wrfinput_d01_2015-06-10_07:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21876 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.21876 rm -f tmp.21876 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.21876 rm -f tmp.21876 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21958 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_07:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.21958 rm -f tmp.21958 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e002 set files = ( wrfinput_d01_2015-06-10_07:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22025 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.22025 rm -f tmp.22025 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.22025 rm -f tmp.22025 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22108 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_07:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.22108 rm -f tmp.22108 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e003 set files = ( wrfinput_d01_2015-06-10_07:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22176 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.22176 rm -f tmp.22176 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.22176 rm -f tmp.22176 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22259 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_07:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.22259 rm -f tmp.22259 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e004 set files = ( wrfinput_d01_2015-06-10_07:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22328 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.22328 rm -f tmp.22328 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.22328 rm -f tmp.22328 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22414 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_07:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.22414 rm -f tmp.22414 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e005 set files = ( wrfinput_d01_2015-06-10_07:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22482 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.22482 rm -f tmp.22482 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.22482 rm -f tmp.22482 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22564 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_07:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.22564 rm -f tmp.22564 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e006 set files = ( wrfinput_d01_2015-06-10_07:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22632 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.22632 rm -f tmp.22632 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.22632 rm -f tmp.22632 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22715 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_07:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.22715 rm -f tmp.22715 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e007 set files = ( wrfinput_d01_2015-06-10_07:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22782 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.22782 rm -f tmp.22782 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.22782 rm -f tmp.22782 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22865 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_07:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.22865 rm -f tmp.22865 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e008 set files = ( wrfinput_d01_2015-06-10_07:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.22933 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.22933 rm -f tmp.22933 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.22933 rm -f tmp.22933 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.23015 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_07:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.23015 rm -f tmp.23015 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e009 set files = ( wrfinput_d01_2015-06-10_07:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.23083 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.23083 rm -f tmp.23083 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.23083 rm -f tmp.23083 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_07:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_07:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.23165 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.23165 rm -f tmp.23165 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_07:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_07:00:00.e010 set files = ( wrfinput_d01_2015-06-10_07:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_07:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_07:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_07:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.23232 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.23232 rm -f tmp.23232 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_07:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_07:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_07:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.23232 rm -f tmp.23232 if ( wrfinput_d01_2015-06-10_07:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 echo wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e010 ln -s wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_07:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_07:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_07:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_07:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_07:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148595 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=07 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_07:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfinput_d02_2015-06-10_07:00:00 ./. + mv wrfinput_d02_2015-06-10_07:00:00 wrfinput_d02_2015-06-10_07:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23470 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_07:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.23470 rm -f tmp.23470 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_07:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_07:00:00.e000 set files = ( wrfinput_d02_2015-06-10_07:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_07:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_07:00:00.e000 wrfinput_d02_2015-06-10_07:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=07 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_07:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23544 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_07:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.23544 rm -f tmp.23544 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_07:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_07:00:00.e001 set files = ( wrfinput_d02_2015-06-10_07:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_07:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_07:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23616 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_07:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.23616 rm -f tmp.23616 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_07:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_07:00:00.e002 set files = ( wrfinput_d02_2015-06-10_07:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_07:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_07:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23688 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_07:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.23688 rm -f tmp.23688 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_07:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_07:00:00.e003 set files = ( wrfinput_d02_2015-06-10_07:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_07:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_07:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23760 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_07:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.23760 rm -f tmp.23760 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_07:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_07:00:00.e004 set files = ( wrfinput_d02_2015-06-10_07:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_07:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_07:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23832 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_07:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.23832 rm -f tmp.23832 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_07:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_07:00:00.e005 set files = ( wrfinput_d02_2015-06-10_07:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_07:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_07:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23905 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_07:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.23905 rm -f tmp.23905 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_07:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_07:00:00.e006 set files = ( wrfinput_d02_2015-06-10_07:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_07:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_07:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.23985 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_07:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.23985 rm -f tmp.23985 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_07:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_07:00:00.e007 set files = ( wrfinput_d02_2015-06-10_07:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_07:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_07:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.24057 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_07:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.24057 rm -f tmp.24057 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_07:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_07:00:00.e008 set files = ( wrfinput_d02_2015-06-10_07:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_07:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_07:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.24129 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_07:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.24129 rm -f tmp.24129 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_07:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_07:00:00.e009 set files = ( wrfinput_d02_2015-06-10_07:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_07:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_07:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.24201 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.24201 rm -f tmp.24201 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_07:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_07:00:00.e010 set files = ( wrfinput_d02_2015-06-10_07:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_07:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_07:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_07:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_07:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148596 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=07 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_07:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfinput_d03_2015-06-10_07:00:00 ./. + mv wrfinput_d03_2015-06-10_07:00:00 wrfinput_d03_2015-06-10_07:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24311 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_07:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.24311 rm -f tmp.24311 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_07:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_07:00:00.e000 set files = ( wrfinput_d03_2015-06-10_07:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_07:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_07:00:00.e000 wrfinput_d03_2015-06-10_07:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=07 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_07:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24386 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_07:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.24386 rm -f tmp.24386 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_07:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_07:00:00.e001 set files = ( wrfinput_d03_2015-06-10_07:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_07:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_07:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24458 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_07:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.24458 rm -f tmp.24458 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_07:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_07:00:00.e002 set files = ( wrfinput_d03_2015-06-10_07:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_07:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_07:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24530 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_07:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.24530 rm -f tmp.24530 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_07:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_07:00:00.e003 set files = ( wrfinput_d03_2015-06-10_07:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_07:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_07:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24602 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_07:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.24602 rm -f tmp.24602 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_07:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_07:00:00.e004 set files = ( wrfinput_d03_2015-06-10_07:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_07:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_07:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24674 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_07:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.24674 rm -f tmp.24674 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_07:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_07:00:00.e005 set files = ( wrfinput_d03_2015-06-10_07:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_07:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_07:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24747 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_07:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.24747 rm -f tmp.24747 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_07:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_07:00:00.e006 set files = ( wrfinput_d03_2015-06-10_07:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_07:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_07:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24819 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_07:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.24819 rm -f tmp.24819 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_07:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_07:00:00.e007 set files = ( wrfinput_d03_2015-06-10_07:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_07:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_07:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24895 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_07:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.24895 rm -f tmp.24895 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_07:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_07:00:00.e008 set files = ( wrfinput_d03_2015-06-10_07:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_07:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_07:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.24967 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_07:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.24967 rm -f tmp.24967 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_07:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_07:00:00.e009 set files = ( wrfinput_d03_2015-06-10_07:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_07:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_07:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.25039 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_07:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.25039 rm -f tmp.25039 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_07:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_07:00:00.e010 set files = ( wrfinput_d03_2015-06-10_07:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_07:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_07:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_07:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_07:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01_2015-06-10_07:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfbdy_d01_2015-06-10_07:00:00 wrfbdy_d01_2015-06-10_07:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_07:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfinput_d02_2015-06-10_07:00:00 wrfinput_d02_2015-06-10_07:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_07:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/real/wrfinput_d03_2015-06-10_07:00:00 wrfinput_d03_2015-06-10_07:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01_2015-06-10_07:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e001 wrfbdy_d01_2015-06-10_07:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_07:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e001 wrfinput_d02_2015-06-10_07:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_07:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e001 wrfinput_d03_2015-06-10_07:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e002 wrfinput_d01_2015-06-10_07:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e002 wrfbdy_d01_2015-06-10_07:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_07:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e002 wrfinput_d02_2015-06-10_07:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_07:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e002 wrfinput_d03_2015-06-10_07:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e003 wrfinput_d01_2015-06-10_07:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e003 wrfbdy_d01_2015-06-10_07:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_07:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e003 wrfinput_d02_2015-06-10_07:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_07:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e003 wrfinput_d03_2015-06-10_07:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e004 wrfinput_d01_2015-06-10_07:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e004 wrfbdy_d01_2015-06-10_07:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_07:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e004 wrfinput_d02_2015-06-10_07:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_07:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e004 wrfinput_d03_2015-06-10_07:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e005 wrfinput_d01_2015-06-10_07:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e005 wrfbdy_d01_2015-06-10_07:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_07:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e005 wrfinput_d02_2015-06-10_07:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_07:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e005 wrfinput_d03_2015-06-10_07:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e006 wrfinput_d01_2015-06-10_07:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e006 wrfbdy_d01_2015-06-10_07:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_07:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e006 wrfinput_d02_2015-06-10_07:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_07:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e006 wrfinput_d03_2015-06-10_07:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e007 wrfinput_d01_2015-06-10_07:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e007 wrfbdy_d01_2015-06-10_07:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_07:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e007 wrfinput_d02_2015-06-10_07:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_07:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e007 wrfinput_d03_2015-06-10_07:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e008 wrfinput_d01_2015-06-10_07:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e008 wrfbdy_d01_2015-06-10_07:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_07:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e008 wrfinput_d02_2015-06-10_07:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_07:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e008 wrfinput_d03_2015-06-10_07:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e009 wrfinput_d01_2015-06-10_07:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e009 wrfbdy_d01_2015-06-10_07:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_07:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e009 wrfinput_d02_2015-06-10_07:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_07:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e009 wrfinput_d03_2015-06-10_07:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_07:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_07:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d01_2015-06-10_07:00:00.e010 wrfinput_d01_2015-06-10_07:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_bc/wrfbdy_d01_2015-06-10_07:00:00.e010 wrfbdy_d01_2015-06-10_07:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_07:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d02_2015-06-10_07:00:00.e010 wrfinput_d02_2015-06-10_07:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_07:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_met_ic/wrfinput_d03_2015-06-10_07:00:00.e010 wrfinput_d03_2015-06-10_07:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061007 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + LE_DATE=2015061008 + export LE_DATE + [[ 2015061007 -le 2015061008 ]] + echo 2015061007 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061007 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_07:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_07:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_07:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_07:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_07:00:00 wrfbiochemi_d01_2015-06-10_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_07:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_07:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_07:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25639 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_29299.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148597 + WRFCHEMI=wrfchemi_d02_2015-06-10_07:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_07:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_07:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_07:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_07:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_07:00:00 wrfchemi_d02_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_07:00:00 wrffirechemi_d02_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_07:00:00 wrfbiochemi_d02_2015-06-10_07:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_07:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_07:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_07:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25693 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_3650.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148598 + WRFCHEMI=wrfchemi_d03_2015-06-10_07:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_07:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_07:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_07:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_07:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_07:00:00 wrfchemi_d03_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_07:00:00 wrffirechemi_d03_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_07:00:00 wrfbiochemi_d03_2015-06-10_07:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_07:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_07:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_07:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25758 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_22657.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148599 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061008 ]] + echo 2015061008 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061007 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_08:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_08:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_08:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_07:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_08:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_08:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_08:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25989 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_17660.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148600 + WRFCHEMI=wrfchemi_d02_2015-06-10_08:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_08:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_08:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_07:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_07:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_08:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_08:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_08:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26040 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_29274.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148601 + WRFCHEMI=wrfchemi_d03_2015-06-10_08:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_08:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_08:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_07:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_07:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_08:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_08:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_08:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26227 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_16381.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148602 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061008 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_07:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_07:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_07:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 07 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=07 + export L_HH + D_DATE=2015061007 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=07 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=07 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=06 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=07 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061007.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061007.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 07 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=07 + export L_HH + D_DATE=2015061007 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=07 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=07 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=06 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=07 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061007.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061007.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/prepbufr_met_obs/obs_seq_prep_2015061007.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/prepbufr_met_obs/obs_seq_prep_2015061007.out ./obs_seq_MET_2015061007.out + FILE_LIST[1]=obs_seq_MET_2015061007.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/airnow_o3_obs/obs_seq_airnow_o3_2015061007.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/airnow_o3_obs/obs_seq_airnow_o3_2015061007.out ./obs_seq_AIR_O3_2015061007.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061007.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/tolnet_o3_obs/obs_seq_tolnet_o3_2015061007.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/tolnet_o3_obs/obs_seq_tolnet_o3_2015061007.out ./obs_seq_TOL_O3_2015061007.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061007.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061007.out\',\'obs_seq_AIR_O3_2015061007.out\',\'obs_seq_TOL_O3_2015061007.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=23400 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=27000 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 3 8 20 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=23400 which is Gregorian day: 2015 Jun 10 06:30:00 Excluding observations after: day=151370, sec=27000 which is Gregorian day: 2015 Jun 10 07:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061007.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061007.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061007.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 17118 Number of obs really inserted : 17118 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061007.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 17118 Number of obs to be inserted : 889 Number of obs really inserted : 889 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 18007 Actual number of obs in the new seq file : 18007 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=23461 Gregorian day: 2015 Jun 10 06:31:01 Last obs time: day=151370, sec=27000 Gregorian day: 2015 Jun 10 07:30:00 Number of obs processed : 18007 --------------------------------------------------------- AIRCRAFT_U_WIND_COMPONENT 3 obs AIRCRAFT_V_WIND_COMPONENT 3 obs AIRCRAFT_TEMPERATURE 21 obs MARINE_SFC_U_WIND_COMPONENT 549 obs MARINE_SFC_V_WIND_COMPONENT 549 obs MARINE_SFC_TEMPERATURE 609 obs MARINE_SFC_SPECIFIC_HUMIDITY 150 obs LAND_SFC_U_WIND_COMPONENT 28 obs LAND_SFC_V_WIND_COMPONENT 28 obs LAND_SFC_TEMPERATURE 28 obs LAND_SFC_SPECIFIC_HUMIDITY 24 obs SAT_U_WIND_COMPONENT 7224 obs SAT_V_WIND_COMPONENT 7224 obs MARINE_SFC_ALTIMETER 650 obs LAND_SFC_ALTIMETER 28 obs AIRNOW_O3 889 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 3 8 20 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061007.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_07:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_07:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_07:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_07:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_07:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_07:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 7, 0, 0, last_bin_center = 2015, 6, 10, 7, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 23400, last_obs_days = 151370, last_obs_seconds = 27000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 28800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/combine_obs/obs_seq_comb_2015061007.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 25200 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148663 + mv obs_seq.new obs_seq_comb_filtered_2015061007.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061008 + export CYCLE_DATE + [[ 2015061008 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061008 + export DATE + cut -c1-4 + echo 2015061008 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061008 + YY=15 + export YY + cut -c5-6 + echo 2015061008 + MM=06 + export MM + cut -c7-8 + echo 2015061008 + DD=10 + export DD + cut -c9-10 + echo 2015061008 + HH=08 + export HH + DATE_SHORT=15061008 + export DATE_SHORT + FILE_DATE=2015-06-10_08:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 -1 + 2> /dev/null + PAST_DATE=2015061007 + export PAST_DATE + cut -c1-4 + echo 2015061007 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061007 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061007 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061007 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061007 + PAST_HH=07 + export PAST_HH + PAST_FILE_DATE=2015-06-10_07:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + NEXT_DATE=2015061009 + export NEXT_DATE + cut -c1-4 + echo 2015061009 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061009 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061009 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061009 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061009 + NEXT_HH=09 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_09:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=08 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 08 + 0 )) + [[ 08 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=08 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 08 + 0 )) + D_DATE=2015061008 + export D_DATE + echo 2015061008 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 28800 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=28800 + export SEC_GREG + echo 2015061009 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 32400 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=32400 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100730 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100730 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100730 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100730 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100730 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100730 + ASIM_MIN_HH=07 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100830 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100830 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100830 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100830 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100830 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100830 + ASIM_MAX_HH=08 + export ASIM_MAX_HH + echo 201506100730 201506100730 + echo 201506100730 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 27000 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=27000 + export ASIM_MIN_SEC_GREG + echo 201506100830 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 30600 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=30600 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061008 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061008 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + END_DATE=2015061009 + export END_DATE + cut -c1-4 + echo 2015061008 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061008 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061008 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061008 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061008 + START_HOUR=08 + export START_HOUR + START_FILE_DATE=2015-06-10_08:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061009 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061009 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061009 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061009 + END_HOUR=09 + export END_HOUR + END_FILE_DATE=2015-06-10_09:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061007/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=08,08,08 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=09,09,09 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_07:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_08:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100730 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 27000 + (( temp[1]=27000+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=27001 + export NL_FIRST_OBS_SECONDS + echo 201506100830 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 30600 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=30600 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061008 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=8 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=8 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=32400 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100730 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100830 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100730 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100730 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100730 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100730 + ASIM_MN_HH=07 + export ASIM_MN_HH + cut -c1-4 + echo 201506100830 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100830 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100830 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100830 + ASIM_MX_HH=08 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + E_DATE=2015061009 + export E_DATE + cut -c1-4 + echo 2015061009 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061009 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061009 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061009 + E_HH=09 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061008 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + cut -c1-4 + echo 2015061008 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061008 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061008 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061008 + L_START_HOUR=08 + export L_START_HOUR + cut -c1-4 + echo 2015061009 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061009 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061009 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061009 + L_END_HOUR=09 + export L_END_HOUR + cut -c1-4 + echo 2015061008 + cut -c1-4 + echo 2015061008 + cut -c1-4 + echo 2015061008 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061008 + cut -c5-6 + echo 2015061008 + cut -c5-6 + echo 2015061008 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061008 + cut -c7-8 + echo 2015061008 + cut -c7-8 + echo 2015061008 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061008 + cut -c9-10 + echo 2015061008 + cut -c9-10 + echo 2015061008 + NL_START_HOUR=08,08,08 + export NL_START_HOUR + cut -c1-4 + echo 2015061009 + cut -c1-4 + echo 2015061009 + cut -c1-4 + echo 2015061009 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061009 + cut -c5-6 + echo 2015061009 + cut -c5-6 + echo 2015061009 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061009 + cut -c7-8 + echo 2015061009 + cut -c7-8 + echo 2015061009 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061009 + cut -c9-10 + echo 2015061009 + cut -c9-10 + echo 2015061009 + NL_END_HOUR=09,09,09 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_08:00:00\',\'2015-06-10_08:00:00\',\'2015-06-10_08:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_09:00:00\',\'2015-06-10_09:00:00\',\'2015-06-10_09:00:00\'' + export NL_END_DATE + P_DATE=2015061008 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_END_DATE=2015061009 + export P_END_DATE + [[ 2015061008 -le 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_08:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_07:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_08:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28020 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21438.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148664 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28033 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9896.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148665 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28047 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4657.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148667 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28074 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18966.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148668 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28088 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21440.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148669 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28101 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30391.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148670 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28128 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8448.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148671 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28143 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21645.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148672 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28156 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22702.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148673 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28183 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23041.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148674 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28197 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30217.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148675 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28210 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29317.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148676 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28238 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12517.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148677 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28252 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26760.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148678 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28265 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13108.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148679 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28293 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14968.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148680 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28306 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_33.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148681 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28320 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19365.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148682 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28347 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23249.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148683 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28360 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4758.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148684 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28374 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31411.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148685 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28401 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2775.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148686 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28414 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8453.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148687 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28428 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15247.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148688 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28455 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26131.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148689 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28468 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17558.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148690 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28482 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18513.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148691 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28509 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20764.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148692 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28522 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7856.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148693 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_08:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_08:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_07:30:00', / &wrfvar22 time_window_max = '2015-06-10_08:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_08:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28536 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12607.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148694 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_08:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_08:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_08:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_09:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_08:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_09:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21438.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28810 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14418.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148696 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9896.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28824 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12416.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148697 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4657.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28838 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_83.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148698 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18966.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28865 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15963.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148699 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21440.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28879 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3735.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148700 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30391.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28893 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30545.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148701 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8448.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28921 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16168.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148702 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21645.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28935 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25821.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148703 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22702.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28948 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21316.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148704 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23041.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28976 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29346.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148705 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30217.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28989 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10583.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148706 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29317.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29003 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9710.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148707 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12517.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29031 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9065.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148708 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26760.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29044 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2655.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148709 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13108.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29058 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26187.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148710 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14968.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29086 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9226.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148711 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_33.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29099 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13965.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148712 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19365.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29113 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5686.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148713 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23249.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29141 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32236.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148714 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4758.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29154 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22670.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148715 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31411.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29168 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24441.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148716 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2775.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29196 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12164.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148717 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8453.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29209 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24102.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148718 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15247.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29223 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6576.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148719 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26131.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29251 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20463.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148720 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17558.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29264 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12176.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148721 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18513.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29278 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23980.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148722 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20764.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -f hhddmmyycc + NL_SEED_ARRAY1=0810061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061008 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + [[ 08 -ge 00 ]] + [[ 08 -lt 06 ]] + [[ 08 -ge 06 ]] + [[ 08 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29306 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24266.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148723 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7856.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29319 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14420.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148724 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12607.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 08,08,08, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 09,09,09, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29333 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32539.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148725 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + P_DATE=2015061010 + export P_DATE + [[ 2015061010 -le 2015061009 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=23949 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29636 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_10427.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148729 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=23949 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29846 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_25188.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148730 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=23949 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30181 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20151.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148731 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=23949 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30392 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15806.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148732 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=23949 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30605 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28817.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148733 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=23949 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30818 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32531.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148734 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=23949 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31029 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20425.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148735 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=23949 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31244 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32182.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148736 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=23949 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31455 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_29940.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148737 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061007.out','obs_seq_AIR_O3_2015061007.out','obs_seq_TOL_O3_2015061007.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27001, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + TRANDOM=23949 + [[ 2015061008 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31666 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19438.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148738 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061009 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_08:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_08:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfinput_d02_2015-06-10_08:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfinput_d03_2015-06-10_08:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfinput_d02_2015-06-10_08:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfinput_d03_2015-06-10_08:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + LE_DATE=2015061009 + export LE_DATE + [[ 2015061008 -le 2015061009 ]] + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_08:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_08:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_08:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_08:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_09:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_09:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_09:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_09:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061008 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148741 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=08 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_08:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_08:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfinput_d01_2015-06-10_08:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 ./. + mv wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e000 + mv wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_d01_2015-06-10_08:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31803 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_08:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.31803 rm -f tmp.31803 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e000 set files = ( wrfinput_d01_2015-06-10_08:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31871 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.31871 rm -f tmp.31871 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.31871 rm -f tmp.31871 if ( wrfinput_d01_2015-06-10_08:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00.e000 echo wrfinput_d01_2015-06-10_08:00:00.e000 wrfinput_d01_2015-06-10_08:00:00.e000 ln -s wrfinput_d01_2015-06-10_08:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_08:00:00.e000 wrfinput_d01_2015-06-10_08:00:00 + mv wrfbdy_d01_2015-06-10_08:00:00.e000 wrfbdy_d01_2015-06-10_08:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=08 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31956 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_08:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.31956 rm -f tmp.31956 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e001 set files = ( wrfinput_d01_2015-06-10_08:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32024 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.32024 rm -f tmp.32024 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.32024 rm -f tmp.32024 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32108 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_08:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.32108 rm -f tmp.32108 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e002 set files = ( wrfinput_d01_2015-06-10_08:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32176 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.32176 rm -f tmp.32176 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.32176 rm -f tmp.32176 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32258 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_08:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.32258 rm -f tmp.32258 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e003 set files = ( wrfinput_d01_2015-06-10_08:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32326 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.32326 rm -f tmp.32326 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.32326 rm -f tmp.32326 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32408 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_08:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.32408 rm -f tmp.32408 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e004 set files = ( wrfinput_d01_2015-06-10_08:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32476 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.32476 rm -f tmp.32476 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.32476 rm -f tmp.32476 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32559 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_08:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.32559 rm -f tmp.32559 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e005 set files = ( wrfinput_d01_2015-06-10_08:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32631 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.32631 rm -f tmp.32631 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.32631 rm -f tmp.32631 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32713 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_08:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.32713 rm -f tmp.32713 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e006 set files = ( wrfinput_d01_2015-06-10_08:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.313 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.313 rm -f tmp.313 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.313 rm -f tmp.313 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.399 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_08:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.399 rm -f tmp.399 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e007 set files = ( wrfinput_d01_2015-06-10_08:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.468 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.468 rm -f tmp.468 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.468 rm -f tmp.468 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.550 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_08:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.550 rm -f tmp.550 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e008 set files = ( wrfinput_d01_2015-06-10_08:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.617 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.617 rm -f tmp.617 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.617 rm -f tmp.617 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.701 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_08:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.701 rm -f tmp.701 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e009 set files = ( wrfinput_d01_2015-06-10_08:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.771 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.771 rm -f tmp.771 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.771 rm -f tmp.771 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_08:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_08:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.855 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.855 rm -f tmp.855 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_08:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_08:00:00.e010 set files = ( wrfinput_d01_2015-06-10_08:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_08:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_08:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_08:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.922 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.922 rm -f tmp.922 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_08:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_08:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_08:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.922 rm -f tmp.922 if ( wrfinput_d01_2015-06-10_08:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 echo wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e010 ln -s wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_08:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_08:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_08:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_08:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_08:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148744 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=08 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_08:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfinput_d02_2015-06-10_08:00:00 ./. + mv wrfinput_d02_2015-06-10_08:00:00 wrfinput_d02_2015-06-10_08:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1161 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_08:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.1161 rm -f tmp.1161 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_08:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_08:00:00.e000 set files = ( wrfinput_d02_2015-06-10_08:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_08:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_08:00:00.e000 wrfinput_d02_2015-06-10_08:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=08 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_08:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1236 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_08:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.1236 rm -f tmp.1236 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_08:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_08:00:00.e001 set files = ( wrfinput_d02_2015-06-10_08:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_08:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_08:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1308 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_08:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.1308 rm -f tmp.1308 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_08:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_08:00:00.e002 set files = ( wrfinput_d02_2015-06-10_08:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_08:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_08:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1380 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_08:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.1380 rm -f tmp.1380 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_08:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_08:00:00.e003 set files = ( wrfinput_d02_2015-06-10_08:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_08:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_08:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1452 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_08:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.1452 rm -f tmp.1452 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_08:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_08:00:00.e004 set files = ( wrfinput_d02_2015-06-10_08:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_08:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_08:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1524 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_08:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.1524 rm -f tmp.1524 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_08:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_08:00:00.e005 set files = ( wrfinput_d02_2015-06-10_08:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_08:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_08:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1596 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_08:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.1596 rm -f tmp.1596 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_08:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_08:00:00.e006 set files = ( wrfinput_d02_2015-06-10_08:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_08:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_08:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1668 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_08:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.1668 rm -f tmp.1668 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_08:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_08:00:00.e007 set files = ( wrfinput_d02_2015-06-10_08:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_08:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_08:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1741 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_08:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.1741 rm -f tmp.1741 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_08:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_08:00:00.e008 set files = ( wrfinput_d02_2015-06-10_08:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_08:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_08:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1813 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_08:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.1813 rm -f tmp.1813 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_08:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_08:00:00.e009 set files = ( wrfinput_d02_2015-06-10_08:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_08:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_08:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1885 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.1885 rm -f tmp.1885 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_08:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_08:00:00.e010 set files = ( wrfinput_d02_2015-06-10_08:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_08:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_08:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_08:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_08:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148747 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=08 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_08:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfinput_d03_2015-06-10_08:00:00 ./. + mv wrfinput_d03_2015-06-10_08:00:00 wrfinput_d03_2015-06-10_08:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.1997 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_08:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.1997 rm -f tmp.1997 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_08:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_08:00:00.e000 set files = ( wrfinput_d03_2015-06-10_08:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_08:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_08:00:00.e000 wrfinput_d03_2015-06-10_08:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=08 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_08:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2071 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_08:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.2071 rm -f tmp.2071 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_08:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_08:00:00.e001 set files = ( wrfinput_d03_2015-06-10_08:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_08:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_08:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2143 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_08:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.2143 rm -f tmp.2143 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_08:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_08:00:00.e002 set files = ( wrfinput_d03_2015-06-10_08:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_08:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_08:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2215 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_08:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.2215 rm -f tmp.2215 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_08:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_08:00:00.e003 set files = ( wrfinput_d03_2015-06-10_08:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_08:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_08:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2295 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_08:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.2295 rm -f tmp.2295 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_08:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_08:00:00.e004 set files = ( wrfinput_d03_2015-06-10_08:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_08:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_08:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2375 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_08:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.2375 rm -f tmp.2375 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_08:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_08:00:00.e005 set files = ( wrfinput_d03_2015-06-10_08:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_08:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_08:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2459 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_08:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.2459 rm -f tmp.2459 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_08:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_08:00:00.e006 set files = ( wrfinput_d03_2015-06-10_08:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_08:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_08:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2536 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_08:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.2536 rm -f tmp.2536 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_08:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_08:00:00.e007 set files = ( wrfinput_d03_2015-06-10_08:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_08:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_08:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2638 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_08:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.2638 rm -f tmp.2638 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_08:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_08:00:00.e008 set files = ( wrfinput_d03_2015-06-10_08:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_08:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_08:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2728 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_08:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.2728 rm -f tmp.2728 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_08:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_08:00:00.e009 set files = ( wrfinput_d03_2015-06-10_08:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_08:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_08:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.2801 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_08:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.2801 rm -f tmp.2801 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_08:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_08:00:00.e010 set files = ( wrfinput_d03_2015-06-10_08:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_08:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_08:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_08:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_08:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01_2015-06-10_08:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfbdy_d01_2015-06-10_08:00:00 wrfbdy_d01_2015-06-10_08:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_08:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfinput_d02_2015-06-10_08:00:00 wrfinput_d02_2015-06-10_08:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_08:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/real/wrfinput_d03_2015-06-10_08:00:00 wrfinput_d03_2015-06-10_08:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01_2015-06-10_08:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e001 wrfbdy_d01_2015-06-10_08:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_08:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e001 wrfinput_d02_2015-06-10_08:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_08:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e001 wrfinput_d03_2015-06-10_08:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e002 wrfinput_d01_2015-06-10_08:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e002 wrfbdy_d01_2015-06-10_08:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_08:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e002 wrfinput_d02_2015-06-10_08:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_08:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e002 wrfinput_d03_2015-06-10_08:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e003 wrfinput_d01_2015-06-10_08:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e003 wrfbdy_d01_2015-06-10_08:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_08:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e003 wrfinput_d02_2015-06-10_08:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_08:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e003 wrfinput_d03_2015-06-10_08:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e004 wrfinput_d01_2015-06-10_08:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e004 wrfbdy_d01_2015-06-10_08:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_08:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e004 wrfinput_d02_2015-06-10_08:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_08:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e004 wrfinput_d03_2015-06-10_08:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e005 wrfinput_d01_2015-06-10_08:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e005 wrfbdy_d01_2015-06-10_08:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_08:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e005 wrfinput_d02_2015-06-10_08:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_08:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e005 wrfinput_d03_2015-06-10_08:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e006 wrfinput_d01_2015-06-10_08:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e006 wrfbdy_d01_2015-06-10_08:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_08:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e006 wrfinput_d02_2015-06-10_08:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_08:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e006 wrfinput_d03_2015-06-10_08:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e007 wrfinput_d01_2015-06-10_08:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e007 wrfbdy_d01_2015-06-10_08:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_08:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e007 wrfinput_d02_2015-06-10_08:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_08:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e007 wrfinput_d03_2015-06-10_08:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e008 wrfinput_d01_2015-06-10_08:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e008 wrfbdy_d01_2015-06-10_08:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_08:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e008 wrfinput_d02_2015-06-10_08:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_08:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e008 wrfinput_d03_2015-06-10_08:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e009 wrfinput_d01_2015-06-10_08:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e009 wrfbdy_d01_2015-06-10_08:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_08:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e009 wrfinput_d02_2015-06-10_08:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_08:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e009 wrfinput_d03_2015-06-10_08:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_08:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_08:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d01_2015-06-10_08:00:00.e010 wrfinput_d01_2015-06-10_08:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_bc/wrfbdy_d01_2015-06-10_08:00:00.e010 wrfbdy_d01_2015-06-10_08:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_08:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d02_2015-06-10_08:00:00.e010 wrfinput_d02_2015-06-10_08:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_08:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_met_ic/wrfinput_d03_2015-06-10_08:00:00.e010 wrfinput_d03_2015-06-10_08:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061008 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + LE_DATE=2015061009 + export LE_DATE + [[ 2015061008 -le 2015061009 ]] + echo 2015061008 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061008 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_08:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_08:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_08:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_08:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_08:00:00 wrfbiochemi_d01_2015-06-10_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_08:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_08:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_08:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3435 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_7633.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148748 + WRFCHEMI=wrfchemi_d02_2015-06-10_08:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_08:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_08:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_08:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_08:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_08:00:00 wrfchemi_d02_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_08:00:00 wrffirechemi_d02_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_08:00:00 wrfbiochemi_d02_2015-06-10_08:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_08:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_08:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_08:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3494 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_15810.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148749 + WRFCHEMI=wrfchemi_d03_2015-06-10_08:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_08:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_08:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_08:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_08:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_08:00:00 wrfchemi_d03_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_08:00:00 wrffirechemi_d03_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_08:00:00 wrfbiochemi_d03_2015-06-10_08:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_08:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_08:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_08:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3565 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_25376.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148750 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061009 ]] + echo 2015061009 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061008 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_09:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_09:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_09:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_08:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_09:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_09:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_09:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3796 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_25722.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148751 + WRFCHEMI=wrfchemi_d02_2015-06-10_09:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_09:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_09:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_08:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_08:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_09:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_09:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_09:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3849 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_24093.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148752 + WRFCHEMI=wrfchemi_d03_2015-06-10_09:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_09:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_09:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_08:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_08:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_09:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_09:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_09:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4044 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_499.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148753 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061009 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_08:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_08:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_08:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 08 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=08 + export L_HH + D_DATE=2015061008 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=08 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=08 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=07 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=08 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061008.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061008.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 08 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=08 + export L_HH + D_DATE=2015061008 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=08 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=08 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=07 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=08 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061008.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061008.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/prepbufr_met_obs/obs_seq_prep_2015061008.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/prepbufr_met_obs/obs_seq_prep_2015061008.out ./obs_seq_MET_2015061008.out + FILE_LIST[1]=obs_seq_MET_2015061008.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/airnow_o3_obs/obs_seq_airnow_o3_2015061008.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/airnow_o3_obs/obs_seq_airnow_o3_2015061008.out ./obs_seq_AIR_O3_2015061008.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061008.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/tolnet_o3_obs/obs_seq_tolnet_o3_2015061008.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/tolnet_o3_obs/obs_seq_tolnet_o3_2015061008.out ./obs_seq_TOL_O3_2015061008.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061008.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061008.out\',\'obs_seq_AIR_O3_2015061008.out\',\'obs_seq_TOL_O3_2015061008.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=27000 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=30600 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 3 28 24 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=27000 which is Gregorian day: 2015 Jun 10 07:30:00 Excluding observations after: day=151370, sec=30600 which is Gregorian day: 2015 Jun 10 08:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061008.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061008.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061008.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 2683 Number of obs really inserted : 2683 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061008.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 2683 Number of obs to be inserted : 864 Number of obs really inserted : 864 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 3547 Actual number of obs in the new seq file : 3547 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=27061 Gregorian day: 2015 Jun 10 07:31:01 Last obs time: day=151370, sec=30600 Gregorian day: 2015 Jun 10 08:30:00 Number of obs processed : 3547 --------------------------------------------------------- AIRCRAFT_U_WIND_COMPONENT 8 obs AIRCRAFT_V_WIND_COMPONENT 8 obs AIRCRAFT_TEMPERATURE 18 obs MARINE_SFC_U_WIND_COMPONENT 549 obs MARINE_SFC_V_WIND_COMPONENT 549 obs MARINE_SFC_TEMPERATURE 606 obs MARINE_SFC_SPECIFIC_HUMIDITY 149 obs LAND_SFC_U_WIND_COMPONENT 31 obs LAND_SFC_V_WIND_COMPONENT 31 obs LAND_SFC_TEMPERATURE 31 obs LAND_SFC_SPECIFIC_HUMIDITY 24 obs MARINE_SFC_ALTIMETER 648 obs LAND_SFC_ALTIMETER 31 obs AIRNOW_O3 864 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 3 28 24 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061008.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_08:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_08:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_08:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_08:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_08:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_08:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 8, 0, 0, last_bin_center = 2015, 6, 10, 8, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 27000, last_obs_days = 151370, last_obs_seconds = 30600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 32400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/combine_obs/obs_seq_comb_2015061008.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 28800 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148786 + mv obs_seq.new obs_seq_comb_filtered_2015061008.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061009 + export CYCLE_DATE + [[ 2015061009 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061009 + export DATE + echo 2015061009 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061009 + YY=15 + export YY + cut -c5-6 + echo 2015061009 + MM=06 + export MM + cut -c7-8 + echo 2015061009 + DD=10 + export DD + cut -c9-10 + echo 2015061009 + HH=09 + export HH + DATE_SHORT=15061009 + export DATE_SHORT + FILE_DATE=2015-06-10_09:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 -1 + 2> /dev/null + PAST_DATE=2015061008 + export PAST_DATE + cut -c1-4 + echo 2015061008 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061008 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061008 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061008 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061008 + PAST_HH=08 + export PAST_HH + PAST_FILE_DATE=2015-06-10_08:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + NEXT_DATE=2015061010 + export NEXT_DATE + cut -c1-4 + echo 2015061010 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061010 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061010 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061010 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061010 + NEXT_HH=10 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_10:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=09 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 09 + 0 )) + [[ 09 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=09 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 09 + 0 )) + D_DATE=2015061009 + export D_DATE + echo 2015061009 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 32400 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=32400 + export SEC_GREG + echo 2015061010 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 36000 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=36000 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100830 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100830 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100830 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100830 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100830 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100830 + ASIM_MIN_HH=08 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100930 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100930 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100930 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100930 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100930 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100930 + ASIM_MAX_HH=09 + export ASIM_MAX_HH + echo 201506100830 201506100830 + echo 201506100830 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 30600 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=30600 + export ASIM_MIN_SEC_GREG + echo 201506100930 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 34200 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=34200 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061009 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061009 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + END_DATE=2015061010 + export END_DATE + cut -c1-4 + echo 2015061009 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061009 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061009 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061009 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061009 + START_HOUR=09 + export START_HOUR + START_FILE_DATE=2015-06-10_09:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061010 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061010 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061010 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061010 + END_HOUR=10 + export END_HOUR + END_FILE_DATE=2015-06-10_10:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061008/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=09,09,09 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=10,10,10 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_08:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_09:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100830 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 30600 + (( temp[1]=30600+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=30601 + export NL_FIRST_OBS_SECONDS + echo 201506100930 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 34200 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=34200 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061009 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=9 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=9 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=36000 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100830 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100930 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100830 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100830 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100830 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100830 + ASIM_MN_HH=08 + export ASIM_MN_HH + cut -c1-4 + echo 201506100930 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100930 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100930 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100930 + ASIM_MX_HH=09 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + E_DATE=2015061010 + export E_DATE + cut -c1-4 + echo 2015061010 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061010 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061010 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061010 + E_HH=10 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061009 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + cut -c1-4 + echo 2015061009 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061009 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061009 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061009 + L_START_HOUR=09 + export L_START_HOUR + cut -c1-4 + echo 2015061010 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061010 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061010 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061010 + L_END_HOUR=10 + export L_END_HOUR + cut -c1-4 + echo 2015061009 + cut -c1-4 + echo 2015061009 + cut -c1-4 + echo 2015061009 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061009 + cut -c5-6 + echo 2015061009 + cut -c5-6 + echo 2015061009 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061009 + cut -c7-8 + echo 2015061009 + cut -c7-8 + echo 2015061009 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061009 + cut -c9-10 + echo 2015061009 + cut -c9-10 + echo 2015061009 + NL_START_HOUR=09,09,09 + export NL_START_HOUR + cut -c1-4 + echo 2015061010 + cut -c1-4 + echo 2015061010 + cut -c1-4 + echo 2015061010 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061010 + cut -c5-6 + echo 2015061010 + cut -c5-6 + echo 2015061010 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061010 + cut -c7-8 + echo 2015061010 + cut -c7-8 + echo 2015061010 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061010 + cut -c9-10 + echo 2015061010 + cut -c9-10 + echo 2015061010 + NL_END_HOUR=10,10,10 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_09:00:00\',\'2015-06-10_09:00:00\',\'2015-06-10_09:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_10:00:00\',\'2015-06-10_10:00:00\',\'2015-06-10_10:00:00\'' + export NL_END_DATE + P_DATE=2015061009 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + P_END_DATE=2015061010 + export P_END_DATE + [[ 2015061009 -le 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_09:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_08:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_09:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15768 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18668.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148787 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15782 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8279.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148788 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15796 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22947.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148789 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15823 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21024.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148790 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15837 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17805.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148791 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15850 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18267.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148792 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15877 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18740.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148793 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15891 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12046.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148794 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15904 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16089.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148795 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15932 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17419.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148796 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15945 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3666.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148797 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15958 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27446.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148798 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15986 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26126.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148799 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15999 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24772.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148800 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16012 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5400.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148801 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16040 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7586.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148802 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16053 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24567.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148803 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16066 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13654.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148804 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16094 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19389.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148805 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16107 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26776.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148806 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16120 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6134.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148807 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16148 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6531.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148808 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16165 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20980.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148809 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16178 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25242.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148810 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16206 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6810.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148811 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16219 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26978.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148812 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16234 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31531.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148813 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16261 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21042.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148814 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16274 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9834.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148815 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_08:30:00', / &wrfvar22 time_window_max = '2015-06-10_09:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16288 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16532.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148816 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_09:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_09:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + P_DATE=2015061010 + export P_DATE + [[ 2015061010 -le 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_10:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_09:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_10:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18668.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16866 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12776.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148817 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8279.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16880 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24904.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148818 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22947.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16894 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14438.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148819 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21024.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16921 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_170.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148820 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17805.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16935 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28696.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148821 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18267.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16948 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16551.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148822 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18740.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16976 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20172.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148823 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12046.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16990 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18688.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148824 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16089.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17003 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16190.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148825 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17419.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17031 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28572.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148826 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3666.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17044 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20903.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148827 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27446.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17058 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15007.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148828 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26126.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17086 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9587.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148829 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24772.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17099 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26770.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148830 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5400.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17113 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_918.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148831 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7586.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17144 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25315.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148832 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24567.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17158 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22779.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148833 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13654.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17171 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22492.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148834 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19389.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17199 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30432.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148835 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26776.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17213 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1088.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148836 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6134.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17226 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22040.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148837 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6531.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17254 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23003.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148838 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20980.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17267 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12335.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148839 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25242.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17281 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20176.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148840 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6810.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17308 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24869.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148841 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26978.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17322 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6254.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148842 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31531.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17335 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8683.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148843 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21042.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -f hhddmmyycc + NL_SEED_ARRAY1=0910061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061009 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + [[ 09 -ge 00 ]] + [[ 09 -lt 06 ]] + [[ 09 -ge 06 ]] + [[ 09 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17363 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8553.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148844 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9834.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17377 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31894.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148845 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16532.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0910061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 09,09,09, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 10,10,10, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17390 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1092.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148846 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + P_DATE=2015061011 + export P_DATE + [[ 2015061011 -le 2015061010 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=23949 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18117 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20430.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148847 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=23949 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18327 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32004.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148848 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=23949 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18539 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27764.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148849 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=23949 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18757 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_14321.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148850 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=23949 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18968 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16386.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148851 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=23949 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=19179 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31980.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148852 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=23949 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=19390 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_26725.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148853 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=23949 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=19601 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7573.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148854 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=23949 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=19817 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7316.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148855 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061008.out','obs_seq_AIR_O3_2015061008.out','obs_seq_TOL_O3_2015061008.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30601, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_END_DATE=2015061010 + export L_END_DATE + TRANDOM=23949 + [[ 2015061009 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + NEXT_L_DATE=2015061010 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_10:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=20028 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32338.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148856 + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -lt 2015061010 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_09:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfinput_d02_2015-06-10_09:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfinput_d03_2015-06-10_09:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfinput_d02_2015-06-10_09:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfinput_d03_2015-06-10_09:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + LE_DATE=2015061010 + export LE_DATE + [[ 2015061009 -le 2015061010 ]] + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_09:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_09:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_09:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_09:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_10:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_10:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_10:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_10:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061009 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148857 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=09 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_09:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_09:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfinput_d01_2015-06-10_09:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 ./. + mv wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e000 + mv wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_d01_2015-06-10_09:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20168 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_09:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.20168 rm -f tmp.20168 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e000 set files = ( wrfinput_d01_2015-06-10_09:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20236 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.20236 rm -f tmp.20236 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.20236 rm -f tmp.20236 if ( wrfinput_d01_2015-06-10_09:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00.e000 echo wrfinput_d01_2015-06-10_09:00:00.e000 wrfinput_d01_2015-06-10_09:00:00.e000 ln -s wrfinput_d01_2015-06-10_09:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_09:00:00.e000 wrfinput_d01_2015-06-10_09:00:00 + mv wrfbdy_d01_2015-06-10_09:00:00.e000 wrfbdy_d01_2015-06-10_09:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=09 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20322 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_09:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.20322 rm -f tmp.20322 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e001 set files = ( wrfinput_d01_2015-06-10_09:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20390 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.20390 rm -f tmp.20390 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.20390 rm -f tmp.20390 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20472 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_09:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.20472 rm -f tmp.20472 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e002 set files = ( wrfinput_d01_2015-06-10_09:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20540 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.20540 rm -f tmp.20540 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.20540 rm -f tmp.20540 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20622 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_09:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.20622 rm -f tmp.20622 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e003 set files = ( wrfinput_d01_2015-06-10_09:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20690 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.20690 rm -f tmp.20690 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.20690 rm -f tmp.20690 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20772 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_09:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.20772 rm -f tmp.20772 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e004 set files = ( wrfinput_d01_2015-06-10_09:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20839 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.20839 rm -f tmp.20839 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.20839 rm -f tmp.20839 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20921 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_09:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.20921 rm -f tmp.20921 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e005 set files = ( wrfinput_d01_2015-06-10_09:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20989 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.20989 rm -f tmp.20989 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.20989 rm -f tmp.20989 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21127 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_09:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.21127 rm -f tmp.21127 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e006 set files = ( wrfinput_d01_2015-06-10_09:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21206 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.21206 rm -f tmp.21206 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.21206 rm -f tmp.21206 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21344 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_09:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.21344 rm -f tmp.21344 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e007 set files = ( wrfinput_d01_2015-06-10_09:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21412 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.21412 rm -f tmp.21412 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.21412 rm -f tmp.21412 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21494 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_09:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.21494 rm -f tmp.21494 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e008 set files = ( wrfinput_d01_2015-06-10_09:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21562 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.21562 rm -f tmp.21562 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.21562 rm -f tmp.21562 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21644 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_09:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.21644 rm -f tmp.21644 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e009 set files = ( wrfinput_d01_2015-06-10_09:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21713 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.21713 rm -f tmp.21713 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.21713 rm -f tmp.21713 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_09:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_09:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21795 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21795 rm -f tmp.21795 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_09:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_09:00:00.e010 set files = ( wrfinput_d01_2015-06-10_09:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_09:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_09:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_09:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21862 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21862 rm -f tmp.21862 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_09:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_09:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_09:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21862 rm -f tmp.21862 if ( wrfinput_d01_2015-06-10_09:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 echo wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e010 ln -s wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_09:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_09:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_09:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_09:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_09:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148858 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=09 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_09:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfinput_d02_2015-06-10_09:00:00 ./. + mv wrfinput_d02_2015-06-10_09:00:00 wrfinput_d02_2015-06-10_09:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.21985 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_09:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.21985 rm -f tmp.21985 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_09:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_09:00:00.e000 set files = ( wrfinput_d02_2015-06-10_09:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_09:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_09:00:00.e000 wrfinput_d02_2015-06-10_09:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=09 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_09:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.22059 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_09:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.22059 rm -f tmp.22059 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_09:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_09:00:00.e001 set files = ( wrfinput_d02_2015-06-10_09:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_09:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_09:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.22131 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_09:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.22131 rm -f tmp.22131 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_09:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_09:00:00.e002 set files = ( wrfinput_d02_2015-06-10_09:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_09:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_09:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.22203 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_09:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.22203 rm -f tmp.22203 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_09:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_09:00:00.e003 set files = ( wrfinput_d02_2015-06-10_09:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_09:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_09:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.22277 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_09:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.22277 rm -f tmp.22277 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_09:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_09:00:00.e004 set files = ( wrfinput_d02_2015-06-10_09:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_09:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_09:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.22350 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_09:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.22350 rm -f tmp.22350 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_09:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_09:00:00.e005 set files = ( wrfinput_d02_2015-06-10_09:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_09:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_09:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.22422 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_09:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.22422 rm -f tmp.22422 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_09:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_09:00:00.e006 set files = ( wrfinput_d02_2015-06-10_09:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_09:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_09:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.22494 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_09:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.22494 rm -f tmp.22494 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_09:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_09:00:00.e007 set files = ( wrfinput_d02_2015-06-10_09:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_09:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_09:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.22566 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_09:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.22566 rm -f tmp.22566 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_09:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_09:00:00.e008 set files = ( wrfinput_d02_2015-06-10_09:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_09:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_09:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.22638 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_09:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.22638 rm -f tmp.22638 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_09:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_09:00:00.e009 set files = ( wrfinput_d02_2015-06-10_09:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_09:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_09:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.22710 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.22710 rm -f tmp.22710 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_09:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_09:00:00.e010 set files = ( wrfinput_d02_2015-06-10_09:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_09:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_09:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_09:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_09:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148859 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=09 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_09:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfinput_d03_2015-06-10_09:00:00 ./. + mv wrfinput_d03_2015-06-10_09:00:00 wrfinput_d03_2015-06-10_09:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.22818 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_09:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.22818 rm -f tmp.22818 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_09:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_09:00:00.e000 set files = ( wrfinput_d03_2015-06-10_09:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_09:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_09:00:00.e000 wrfinput_d03_2015-06-10_09:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=09 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_09:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.22894 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_09:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.22894 rm -f tmp.22894 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_09:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_09:00:00.e001 set files = ( wrfinput_d03_2015-06-10_09:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_09:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_09:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.22966 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_09:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.22966 rm -f tmp.22966 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_09:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_09:00:00.e002 set files = ( wrfinput_d03_2015-06-10_09:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_09:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_09:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.23038 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_09:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.23038 rm -f tmp.23038 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_09:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_09:00:00.e003 set files = ( wrfinput_d03_2015-06-10_09:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_09:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_09:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.23110 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_09:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.23110 rm -f tmp.23110 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_09:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_09:00:00.e004 set files = ( wrfinput_d03_2015-06-10_09:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_09:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_09:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.23186 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_09:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.23186 rm -f tmp.23186 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_09:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_09:00:00.e005 set files = ( wrfinput_d03_2015-06-10_09:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_09:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_09:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.23258 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_09:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.23258 rm -f tmp.23258 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_09:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_09:00:00.e006 set files = ( wrfinput_d03_2015-06-10_09:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_09:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_09:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.23330 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_09:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.23330 rm -f tmp.23330 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_09:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_09:00:00.e007 set files = ( wrfinput_d03_2015-06-10_09:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_09:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_09:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.23402 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_09:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.23402 rm -f tmp.23402 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_09:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_09:00:00.e008 set files = ( wrfinput_d03_2015-06-10_09:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_09:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_09:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.23474 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_09:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.23474 rm -f tmp.23474 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_09:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_09:00:00.e009 set files = ( wrfinput_d03_2015-06-10_09:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_09:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_09:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.23546 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_09:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.23546 rm -f tmp.23546 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_09:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_09:00:00.e010 set files = ( wrfinput_d03_2015-06-10_09:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_09:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_09:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_09:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_09:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01_2015-06-10_09:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfbdy_d01_2015-06-10_09:00:00 wrfbdy_d01_2015-06-10_09:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_09:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfinput_d02_2015-06-10_09:00:00 wrfinput_d02_2015-06-10_09:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_09:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/real/wrfinput_d03_2015-06-10_09:00:00 wrfinput_d03_2015-06-10_09:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01_2015-06-10_09:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e001 wrfbdy_d01_2015-06-10_09:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_09:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e001 wrfinput_d02_2015-06-10_09:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_09:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e001 wrfinput_d03_2015-06-10_09:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_d01_2015-06-10_09:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e002 wrfbdy_d01_2015-06-10_09:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_09:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e002 wrfinput_d02_2015-06-10_09:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_09:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e002 wrfinput_d03_2015-06-10_09:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_d01_2015-06-10_09:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e003 wrfbdy_d01_2015-06-10_09:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_09:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e003 wrfinput_d02_2015-06-10_09:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_09:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e003 wrfinput_d03_2015-06-10_09:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_d01_2015-06-10_09:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e004 wrfbdy_d01_2015-06-10_09:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_09:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e004 wrfinput_d02_2015-06-10_09:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_09:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e004 wrfinput_d03_2015-06-10_09:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_d01_2015-06-10_09:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e005 wrfbdy_d01_2015-06-10_09:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_09:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e005 wrfinput_d02_2015-06-10_09:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_09:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e005 wrfinput_d03_2015-06-10_09:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_d01_2015-06-10_09:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e006 wrfbdy_d01_2015-06-10_09:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_09:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e006 wrfinput_d02_2015-06-10_09:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_09:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e006 wrfinput_d03_2015-06-10_09:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_d01_2015-06-10_09:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e007 wrfbdy_d01_2015-06-10_09:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_09:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e007 wrfinput_d02_2015-06-10_09:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_09:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e007 wrfinput_d03_2015-06-10_09:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_d01_2015-06-10_09:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e008 wrfbdy_d01_2015-06-10_09:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_09:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e008 wrfinput_d02_2015-06-10_09:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_09:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e008 wrfinput_d03_2015-06-10_09:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_d01_2015-06-10_09:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e009 wrfbdy_d01_2015-06-10_09:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_09:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e009 wrfinput_d02_2015-06-10_09:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_09:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e009 wrfinput_d03_2015-06-10_09:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_09:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_09:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_d01_2015-06-10_09:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_bc/wrfbdy_d01_2015-06-10_09:00:00.e010 wrfbdy_d01_2015-06-10_09:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_09:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d02_2015-06-10_09:00:00.e010 wrfinput_d02_2015-06-10_09:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_09:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_met_ic/wrfinput_d03_2015-06-10_09:00:00.e010 wrfinput_d03_2015-06-10_09:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061009 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + LE_DATE=2015061010 + export LE_DATE + [[ 2015061009 -le 2015061010 ]] + echo 2015061009 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061009 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_09:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_09:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_09:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_09:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_09:00:00 wrfbiochemi_d01_2015-06-10_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_09:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_09:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_09:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24164 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_29247.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148860 + WRFCHEMI=wrfchemi_d02_2015-06-10_09:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_09:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_09:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_09:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_09:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_09:00:00 wrfchemi_d02_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_09:00:00 wrffirechemi_d02_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_09:00:00 wrfbiochemi_d02_2015-06-10_09:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_09:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_09:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_09:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24215 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_7934.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148861 + WRFCHEMI=wrfchemi_d03_2015-06-10_09:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_09:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_09:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_09:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_09:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_09:00:00 wrfchemi_d03_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_09:00:00 wrffirechemi_d03_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_09:00:00 wrfbiochemi_d03_2015-06-10_09:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_09:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_09:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_09:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24279 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_22541.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148862 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061010 ]] + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061009 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_10:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_10:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_10:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_09:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_10:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_10:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_10:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24627 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_2175.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148863 + WRFCHEMI=wrfchemi_d02_2015-06-10_10:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_10:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_10:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_09:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_09:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_10:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_10:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_10:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24680 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_11837.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148864 + WRFCHEMI=wrfchemi_d03_2015-06-10_10:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_10:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_10:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_09:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_09:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_10:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_10:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_10:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24744 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_25336.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148865 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061010 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_09:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_09:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_09:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 09 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=09 + export L_HH + D_DATE=2015061009 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=09 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=09 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=08 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=09 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061009.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061009.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 09 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=09 + export L_HH + D_DATE=2015061009 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=09 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=09 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=08 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=09 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061009.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061009.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/prepbufr_met_obs/obs_seq_prep_2015061009.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/prepbufr_met_obs/obs_seq_prep_2015061009.out ./obs_seq_MET_2015061009.out + FILE_LIST[1]=obs_seq_MET_2015061009.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/airnow_o3_obs/obs_seq_airnow_o3_2015061009.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/airnow_o3_obs/obs_seq_airnow_o3_2015061009.out ./obs_seq_AIR_O3_2015061009.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061009.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/tolnet_o3_obs/obs_seq_tolnet_o3_2015061009.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/tolnet_o3_obs/obs_seq_tolnet_o3_2015061009.out ./obs_seq_TOL_O3_2015061009.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061009.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061009.out\',\'obs_seq_AIR_O3_2015061009.out\',\'obs_seq_TOL_O3_2015061009.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=30600 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=34200 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 3 52 57 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=30600 which is Gregorian day: 2015 Jun 10 08:30:00 Excluding observations after: day=151370, sec=34200 which is Gregorian day: 2015 Jun 10 09:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061009.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061009.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061009.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 2995 Number of obs really inserted : 2995 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061009.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 2995 Number of obs to be inserted : 905 Number of obs really inserted : 905 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 3900 Actual number of obs in the new seq file : 3900 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=32400 Gregorian day: 2015 Jun 10 09:00:00 Last obs time: day=151370, sec=34200 Gregorian day: 2015 Jun 10 09:30:00 Number of obs processed : 3900 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 120 obs RADIOSONDE_V_WIND_COMPONENT 120 obs RADIOSONDE_TEMPERATURE 99 obs RADIOSONDE_SPECIFIC_HUMIDITY 98 obs AIRCRAFT_U_WIND_COMPONENT 2 obs AIRCRAFT_V_WIND_COMPONENT 2 obs AIRCRAFT_TEMPERATURE 4 obs MARINE_SFC_U_WIND_COMPONENT 444 obs MARINE_SFC_V_WIND_COMPONENT 444 obs MARINE_SFC_TEMPERATURE 490 obs MARINE_SFC_SPECIFIC_HUMIDITY 92 obs LAND_SFC_U_WIND_COMPONENT 111 obs LAND_SFC_V_WIND_COMPONENT 111 obs LAND_SFC_TEMPERATURE 113 obs LAND_SFC_SPECIFIC_HUMIDITY 104 obs RADIOSONDE_SURFACE_ALTIMETER 3 obs MARINE_SFC_ALTIMETER 525 obs LAND_SFC_ALTIMETER 113 obs AIRNOW_O3 905 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 3 52 57 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061009.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_09:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_09:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_09:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_09:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_09:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 9, 0, 0, last_bin_center = 2015, 6, 10, 9, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 30600, last_obs_days = 151370, last_obs_seconds = 34200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 36000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/combine_obs/obs_seq_comb_2015061009.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 32400 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148876 + mv obs_seq.new obs_seq_comb_filtered_2015061009.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061010 + export CYCLE_DATE + [[ 2015061010 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061010 + export DATE + cut -c1-4 + echo 2015061010 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061010 + YY=15 + export YY + cut -c5-6 + echo 2015061010 + MM=06 + export MM + cut -c7-8 + echo 2015061010 + DD=10 + export DD + cut -c9-10 + echo 2015061010 + HH=10 + export HH + DATE_SHORT=15061010 + export DATE_SHORT + FILE_DATE=2015-06-10_10:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 -1 + 2> /dev/null + PAST_DATE=2015061009 + export PAST_DATE + cut -c1-4 + echo 2015061009 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061009 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061009 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061009 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061009 + PAST_HH=09 + export PAST_HH + PAST_FILE_DATE=2015-06-10_09:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + NEXT_DATE=2015061011 + export NEXT_DATE + cut -c1-4 + echo 2015061011 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061011 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061011 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061011 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061011 + NEXT_HH=11 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_11:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=10 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 10 + 0 )) + [[ 10 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=10 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 10 + 0 )) + D_DATE=2015061010 + export D_DATE + echo 2015061010 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 36000 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=36000 + export SEC_GREG + echo 2015061011 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 39600 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=39600 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100930 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100930 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100930 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100930 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100930 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100930 + ASIM_MIN_HH=09 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +30m + 2> /dev/null + ASIM_MAX_DATE=201506101030 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506101030 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506101030 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506101030 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506101030 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506101030 + ASIM_MAX_HH=10 + export ASIM_MAX_HH + echo 201506100930 201506100930 + echo 201506100930 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 34200 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=34200 + export ASIM_MIN_SEC_GREG + echo 201506101030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 37800 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=37800 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061010 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061010 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + END_DATE=2015061011 + export END_DATE + cut -c1-4 + echo 2015061010 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061010 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061010 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061010 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061010 + START_HOUR=10 + export START_HOUR + START_FILE_DATE=2015-06-10_10:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061011 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061011 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061011 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061011 + END_HOUR=11 + export END_HOUR + END_FILE_DATE=2015-06-10_11:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061009/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=10,10,10 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=11,11,11 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_09:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_10:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100930 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 34200 + (( temp[1]=34200+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=34201 + export NL_FIRST_OBS_SECONDS + echo 201506101030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 37800 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=37800 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061010 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=10 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=10 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=39600 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100930 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +30m + 2> /dev/null + ASIM_DATE_MAX=201506101030 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100930 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100930 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100930 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100930 + ASIM_MN_HH=09 + export ASIM_MN_HH + cut -c1-4 + echo 201506101030 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506101030 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506101030 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506101030 + ASIM_MX_HH=10 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + E_DATE=2015061011 + export E_DATE + cut -c1-4 + echo 2015061011 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061011 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061011 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061011 + E_HH=11 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061010 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_END_DATE=2015061011 + export L_END_DATE + cut -c1-4 + echo 2015061010 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061010 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061010 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061010 + L_START_HOUR=10 + export L_START_HOUR + cut -c1-4 + echo 2015061011 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061011 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061011 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061011 + L_END_HOUR=11 + export L_END_HOUR + cut -c1-4 + echo 2015061010 + cut -c1-4 + echo 2015061010 + cut -c1-4 + echo 2015061010 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061010 + cut -c5-6 + echo 2015061010 + cut -c5-6 + echo 2015061010 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061010 + cut -c7-8 + echo 2015061010 + cut -c7-8 + echo 2015061010 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061010 + cut -c9-10 + echo 2015061010 + cut -c9-10 + echo 2015061010 + NL_START_HOUR=10,10,10 + export NL_START_HOUR + cut -c1-4 + echo 2015061011 + cut -c1-4 + echo 2015061011 + cut -c1-4 + echo 2015061011 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061011 + cut -c5-6 + echo 2015061011 + cut -c5-6 + echo 2015061011 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061011 + cut -c7-8 + echo 2015061011 + cut -c7-8 + echo 2015061011 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061011 + cut -c9-10 + echo 2015061011 + cut -c9-10 + echo 2015061011 + NL_END_HOUR=11,11,11 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_10:00:00\',\'2015-06-10_10:00:00\',\'2015-06-10_10:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_11:00:00\',\'2015-06-10_11:00:00\',\'2015-06-10_11:00:00\'' + export NL_END_DATE + P_DATE=2015061010 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + P_END_DATE=2015061011 + export P_END_DATE + [[ 2015061010 -le 2015061011 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_10:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_09:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_10:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26538 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15975.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148877 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26552 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14362.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148878 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26566 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15711.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148879 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26593 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18746.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148880 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26606 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13156.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148881 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26620 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20672.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148882 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26647 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2620.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148883 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26660 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15475.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148884 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26674 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26337.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148885 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26701 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16924.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148886 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26715 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13708.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148887 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26728 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31266.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148888 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26755 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26270.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148889 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26831 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6160.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148890 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26844 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32562.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148891 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26904 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21413.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148892 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26950 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3241.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148893 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26963 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3626.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148894 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26990 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26358.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148895 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27004 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18615.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148896 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27017 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16137.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148897 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27044 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9131.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148898 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27058 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30377.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148899 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27071 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14089.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148900 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27099 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12788.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148901 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27112 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25503.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148902 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27125 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12021.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148903 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27153 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30744.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148904 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27167 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11755.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148905 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_10:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_10:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:30:00', / &wrfvar22 time_window_max = '2015-06-10_10:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_10:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27180 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9783.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148906 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_10:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_10:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_10:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + P_DATE=2015061011 + export P_DATE + [[ 2015061011 -le 2015061011 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_11:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_10:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_11:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15975.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27624 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30271.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148907 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14362.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27638 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25572.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148908 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15711.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27652 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3202.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148909 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18746.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27679 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24267.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148910 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13156.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27693 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26689.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148911 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20672.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27706 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30521.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148912 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2620.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27734 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23370.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148913 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15475.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27748 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16942.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148914 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26337.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27761 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24931.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148915 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16924.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27789 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28884.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148916 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13708.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27802 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5222.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148917 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31266.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27816 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31248.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148918 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26270.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27844 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30141.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148919 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6160.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27858 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12047.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148920 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32562.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27872 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30294.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148921 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21413.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27900 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2636.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148922 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3241.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27914 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11368.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148923 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3626.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27927 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5493.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148924 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26358.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27955 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20532.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148925 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18615.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27968 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19926.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148926 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16137.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27982 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3960.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148927 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9131.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28013 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7814.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148928 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30377.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28027 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13100.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148929 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14089.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28040 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12490.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148930 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12788.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28068 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15260.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148931 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25503.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28082 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11756.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148932 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12021.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28095 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11730.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148933 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30744.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -f hhddmmyycc + NL_SEED_ARRAY1=1010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061010 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + [[ 10 -ge 00 ]] + [[ 10 -lt 06 ]] + [[ 10 -ge 06 ]] + [[ 10 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28123 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10100.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148934 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11755.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28137 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22274.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148935 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9783.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 10,10,10, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 11,11,11, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=28151 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_337.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148936 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + P_DATE=2015061012 + export P_DATE + [[ 2015061012 -le 2015061011 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 10, 0, 0, last_bin_center = 2015, 6, 10, 10, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061010 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_END_DATE=2015061011 + export L_END_DATE + TRANDOM=23949 + [[ 2015061010 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + NEXT_L_DATE=2015061011 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_11:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28886 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12572.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148937 + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_10:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 10, 0, 0, last_bin_center = 2015, 6, 10, 10, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061010 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_END_DATE=2015061011 + export L_END_DATE + TRANDOM=23949 + [[ 2015061010 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + NEXT_L_DATE=2015061011 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_11:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29098 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_26738.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148938 + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_10:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 10, 0, 0, last_bin_center = 2015, 6, 10, 10, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061010 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_END_DATE=2015061011 + export L_END_DATE + TRANDOM=23949 + [[ 2015061010 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + NEXT_L_DATE=2015061011 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_11:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29309 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6018.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148939 + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_10:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 10, 0, 0, last_bin_center = 2015, 6, 10, 10, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061010 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_END_DATE=2015061011 + export L_END_DATE + TRANDOM=23949 + [[ 2015061010 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + NEXT_L_DATE=2015061011 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_11:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29522 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16158.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148940 + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_10:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 10, 0, 0, last_bin_center = 2015, 6, 10, 10, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061010 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_END_DATE=2015061011 + export L_END_DATE + TRANDOM=23949 + [[ 2015061010 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + NEXT_L_DATE=2015061011 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_11:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29758 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_25513.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148941 + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_10:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 10, 0, 0, last_bin_center = 2015, 6, 10, 10, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061010 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_END_DATE=2015061011 + export L_END_DATE + TRANDOM=23949 + [[ 2015061010 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + NEXT_L_DATE=2015061011 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_11:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29969 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9683.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148942 + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_10:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 10, 0, 0, last_bin_center = 2015, 6, 10, 10, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061010 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_END_DATE=2015061011 + export L_END_DATE + TRANDOM=23949 + [[ 2015061010 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + NEXT_L_DATE=2015061011 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_11:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30182 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_25299.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148943 + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_10:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 10, 0, 0, last_bin_center = 2015, 6, 10, 10, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061010 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_END_DATE=2015061011 + export L_END_DATE + TRANDOM=23949 + [[ 2015061010 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + NEXT_L_DATE=2015061011 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_11:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30393 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2881.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148944 + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_10:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 10, 0, 0, last_bin_center = 2015, 6, 10, 10, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061010 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_END_DATE=2015061011 + export L_END_DATE + TRANDOM=23949 + [[ 2015061010 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + NEXT_L_DATE=2015061011 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_11:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30609 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21865.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148945 + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_10:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 10, 0, 0, last_bin_center = 2015, 6, 10, 10, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061009.out','obs_seq_AIR_O3_2015061009.out','obs_seq_TOL_O3_2015061009.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34201, last_obs_days = 151370, last_obs_seconds = 37800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061010 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_END_DATE=2015061011 + export L_END_DATE + TRANDOM=23949 + [[ 2015061010 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + NEXT_L_DATE=2015061011 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_11:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30820 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31991.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148946 + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -lt 2015061011 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_10:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_10:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfinput_d02_2015-06-10_10:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfinput_d03_2015-06-10_10:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfinput_d02_2015-06-10_10:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfinput_d03_2015-06-10_10:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi + L_DATE=2015061010 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + LE_DATE=2015061011 + export LE_DATE + [[ 2015061010 -le 2015061011 ]] + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_10:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_10:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_10:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_10:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061011 ]] + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_11:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_11:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_11:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_11:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_11:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061011 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061010 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148947 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=10 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_10:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_10:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfinput_d01_2015-06-10_10:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 ./. + mv wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e000 + mv wrfbdy_d01_2015-06-10_10:00:00 wrfbdy_d01_2015-06-10_10:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31079 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_10:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.31079 rm -f tmp.31079 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_10:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_10:00:00.e000 set files = ( wrfinput_d01_2015-06-10_10:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_10:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31148 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_10:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.31148 rm -f tmp.31148 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_10:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_10:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_10:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_10:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.31148 rm -f tmp.31148 if ( wrfinput_d01_2015-06-10_10:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_10:00:00.e000 echo wrfinput_d01_2015-06-10_10:00:00.e000 wrfinput_d01_2015-06-10_10:00:00.e000 ln -s wrfinput_d01_2015-06-10_10:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_10:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_10:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_10:00:00.e000 wrfinput_d01_2015-06-10_10:00:00 + mv wrfbdy_d01_2015-06-10_10:00:00.e000 wrfbdy_d01_2015-06-10_10:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=10 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_10:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_10:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31233 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_10:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.31233 rm -f tmp.31233 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_10:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_10:00:00.e001 set files = ( wrfinput_d01_2015-06-10_10:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31301 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_10:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.31301 rm -f tmp.31301 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_10:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_10:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_10:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.31301 rm -f tmp.31301 if ( wrfinput_d01_2015-06-10_10:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 echo wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 ln -s wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_10:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_10:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_10:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_10:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31383 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_10:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.31383 rm -f tmp.31383 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_10:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_10:00:00.e002 set files = ( wrfinput_d01_2015-06-10_10:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31451 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_10:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.31451 rm -f tmp.31451 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_10:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_10:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_10:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.31451 rm -f tmp.31451 if ( wrfinput_d01_2015-06-10_10:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 echo wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 ln -s wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_10:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_10:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_10:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_10:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31533 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_10:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.31533 rm -f tmp.31533 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_10:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_10:00:00.e003 set files = ( wrfinput_d01_2015-06-10_10:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31601 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_10:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.31601 rm -f tmp.31601 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_10:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_10:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_10:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.31601 rm -f tmp.31601 if ( wrfinput_d01_2015-06-10_10:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 echo wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 ln -s wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_10:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_10:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_10:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_10:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31684 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_10:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.31684 rm -f tmp.31684 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_10:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_10:00:00.e004 set files = ( wrfinput_d01_2015-06-10_10:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31751 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_10:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.31751 rm -f tmp.31751 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_10:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_10:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_10:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.31751 rm -f tmp.31751 if ( wrfinput_d01_2015-06-10_10:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 echo wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 ln -s wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_10:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_10:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_10:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_10:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31833 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_10:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.31833 rm -f tmp.31833 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_10:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_10:00:00.e005 set files = ( wrfinput_d01_2015-06-10_10:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31901 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_10:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.31901 rm -f tmp.31901 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_10:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_10:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_10:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.31901 rm -f tmp.31901 if ( wrfinput_d01_2015-06-10_10:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 echo wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 ln -s wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_10:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_10:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_10:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_10:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31983 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_10:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.31983 rm -f tmp.31983 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_10:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_10:00:00.e006 set files = ( wrfinput_d01_2015-06-10_10:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32050 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_10:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.32050 rm -f tmp.32050 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_10:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_10:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_10:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.32050 rm -f tmp.32050 if ( wrfinput_d01_2015-06-10_10:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 echo wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 ln -s wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_10:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_10:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_10:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_10:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32132 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_10:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.32132 rm -f tmp.32132 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_10:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_10:00:00.e007 set files = ( wrfinput_d01_2015-06-10_10:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32200 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_10:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.32200 rm -f tmp.32200 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_10:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_10:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_10:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.32200 rm -f tmp.32200 if ( wrfinput_d01_2015-06-10_10:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 echo wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 ln -s wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_10:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_10:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_10:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_10:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32282 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_10:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.32282 rm -f tmp.32282 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_10:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_10:00:00.e008 set files = ( wrfinput_d01_2015-06-10_10:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_10:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32350 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_10:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.32350 rm -f tmp.32350 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_10:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_10:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_10:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01_2015-06-10_10:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.32350 rm -f tmp.32350 if ( wrfinput_d01_2015-06-10_10:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01_2015-06-10_10:00:00.e008 echo wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01_2015-06-10_10:00:00.e008 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01_2015-06-10_10:00:00.e008 ln -s wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_10:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_10:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_10:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_10:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32432 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_10:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.32432 rm -f tmp.32432 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_10:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_10:00:00.e009 set files = ( wrfinput_d01_2015-06-10_10:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_10:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32503 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_10:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.32503 rm -f tmp.32503 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_10:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_10:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_10:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01_2015-06-10_10:00:00.e008 wrfinput_d01_2015-06-10_10:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.32503 rm -f tmp.32503 if ( wrfinput_d01_2015-06-10_10:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01_2015-06-10_10:00:00.e008 wrfinput_d01_2015-06-10_10:00:00.e009 echo wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01_2015-06-10_10:00:00.e008 wrfinput_d01_2015-06-10_10:00:00.e009 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01_2015-06-10_10:00:00.e008 wrfinput_d01_2015-06-10_10:00:00.e009 ln -s wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_10:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_10:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_10:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_10:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32585 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_10:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.32585 rm -f tmp.32585 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_10:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_10:00:00.e010 set files = ( wrfinput_d01_2015-06-10_10:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_10:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_10:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_10:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_10:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.32653 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_10:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.32653 rm -f tmp.32653 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_10:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_10:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_10:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01_2015-06-10_10:00:00.e008 wrfinput_d01_2015-06-10_10:00:00.e009 wrfinput_d01_2015-06-10_10:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.32653 rm -f tmp.32653 if ( wrfinput_d01_2015-06-10_10:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01_2015-06-10_10:00:00.e008 wrfinput_d01_2015-06-10_10:00:00.e009 wrfinput_d01_2015-06-10_10:00:00.e010 echo wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01_2015-06-10_10:00:00.e008 wrfinput_d01_2015-06-10_10:00:00.e009 wrfinput_d01_2015-06-10_10:00:00.e010 wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01_2015-06-10_10:00:00.e008 wrfinput_d01_2015-06-10_10:00:00.e009 wrfinput_d01_2015-06-10_10:00:00.e010 ln -s wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_10:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_10:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_10:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_10:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_10:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148948 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=10 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_10:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfinput_d02_2015-06-10_10:00:00 ./. + mv wrfinput_d02_2015-06-10_10:00:00 wrfinput_d02_2015-06-10_10:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.301 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_10:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.301 rm -f tmp.301 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_10:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_10:00:00.e000 set files = ( wrfinput_d02_2015-06-10_10:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_10:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_10:00:00.e000 wrfinput_d02_2015-06-10_10:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=10 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_10:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.380 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_10:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.380 rm -f tmp.380 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_10:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_10:00:00.e001 set files = ( wrfinput_d02_2015-06-10_10:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_10:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_10:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.453 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_10:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.453 rm -f tmp.453 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_10:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_10:00:00.e002 set files = ( wrfinput_d02_2015-06-10_10:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_10:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_10:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.526 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_10:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.526 rm -f tmp.526 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_10:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_10:00:00.e003 set files = ( wrfinput_d02_2015-06-10_10:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_10:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_10:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.598 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_10:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.598 rm -f tmp.598 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_10:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_10:00:00.e004 set files = ( wrfinput_d02_2015-06-10_10:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_10:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_10:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.672 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_10:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.672 rm -f tmp.672 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_10:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_10:00:00.e005 set files = ( wrfinput_d02_2015-06-10_10:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_10:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_10:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.745 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_10:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.745 rm -f tmp.745 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_10:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_10:00:00.e006 set files = ( wrfinput_d02_2015-06-10_10:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_10:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_10:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.819 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_10:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.819 rm -f tmp.819 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_10:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_10:00:00.e007 set files = ( wrfinput_d02_2015-06-10_10:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_10:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_10:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.892 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_10:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.892 rm -f tmp.892 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_10:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_10:00:00.e008 set files = ( wrfinput_d02_2015-06-10_10:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_10:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_10:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.964 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_10:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.964 rm -f tmp.964 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_10:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_10:00:00.e009 set files = ( wrfinput_d02_2015-06-10_10:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_10:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_10:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.1036 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_10:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.1036 rm -f tmp.1036 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_10:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_10:00:00.e010 set files = ( wrfinput_d02_2015-06-10_10:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_10:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_10:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_10:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_10:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148949 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=10 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_10:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfinput_d03_2015-06-10_10:00:00 ./. + mv wrfinput_d03_2015-06-10_10:00:00 wrfinput_d03_2015-06-10_10:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.1145 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_10:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.1145 rm -f tmp.1145 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_10:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_10:00:00.e000 set files = ( wrfinput_d03_2015-06-10_10:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_10:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_10:00:00.e000 wrfinput_d03_2015-06-10_10:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=10 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_10:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.1219 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_10:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.1219 rm -f tmp.1219 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_10:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_10:00:00.e001 set files = ( wrfinput_d03_2015-06-10_10:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_10:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_10:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.1292 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_10:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.1292 rm -f tmp.1292 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_10:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_10:00:00.e002 set files = ( wrfinput_d03_2015-06-10_10:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_10:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_10:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.1364 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_10:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.1364 rm -f tmp.1364 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_10:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_10:00:00.e003 set files = ( wrfinput_d03_2015-06-10_10:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_10:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_10:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.1436 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_10:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.1436 rm -f tmp.1436 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_10:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_10:00:00.e004 set files = ( wrfinput_d03_2015-06-10_10:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_10:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_10:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.1508 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_10:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.1508 rm -f tmp.1508 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_10:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_10:00:00.e005 set files = ( wrfinput_d03_2015-06-10_10:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_10:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_10:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.1580 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_10:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.1580 rm -f tmp.1580 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_10:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_10:00:00.e006 set files = ( wrfinput_d03_2015-06-10_10:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_10:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_10:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.1652 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_10:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.1652 rm -f tmp.1652 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_10:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_10:00:00.e007 set files = ( wrfinput_d03_2015-06-10_10:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_10:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_10:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.1724 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_10:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.1724 rm -f tmp.1724 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_10:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_10:00:00.e008 set files = ( wrfinput_d03_2015-06-10_10:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_10:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_10:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.1796 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_10:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.1796 rm -f tmp.1796 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_10:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_10:00:00.e009 set files = ( wrfinput_d03_2015-06-10_10:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_10:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_10:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.1868 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_10:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.1868 rm -f tmp.1868 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_10:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_10:00:00.e010 set files = ( wrfinput_d03_2015-06-10_10:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_10:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_10:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_10:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_10:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_10:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_10:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01_2015-06-10_10:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfbdy_d01_2015-06-10_10:00:00 wrfbdy_d01_2015-06-10_10:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_10:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfinput_d02_2015-06-10_10:00:00 wrfinput_d02_2015-06-10_10:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_10:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/real/wrfinput_d03_2015-06-10_10:00:00 wrfinput_d03_2015-06-10_10:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_10:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_10:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01_2015-06-10_10:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e001 wrfbdy_d01_2015-06-10_10:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_10:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e001 wrfinput_d02_2015-06-10_10:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_10:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e001 wrfinput_d03_2015-06-10_10:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_10:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_10:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e002 wrfinput_d01_2015-06-10_10:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e002 wrfbdy_d01_2015-06-10_10:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_10:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e002 wrfinput_d02_2015-06-10_10:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_10:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e002 wrfinput_d03_2015-06-10_10:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_10:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_10:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e003 wrfinput_d01_2015-06-10_10:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e003 wrfbdy_d01_2015-06-10_10:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_10:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e003 wrfinput_d02_2015-06-10_10:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_10:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e003 wrfinput_d03_2015-06-10_10:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_10:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_10:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e004 wrfinput_d01_2015-06-10_10:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e004 wrfbdy_d01_2015-06-10_10:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_10:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e004 wrfinput_d02_2015-06-10_10:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_10:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e004 wrfinput_d03_2015-06-10_10:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_10:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_10:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e005 wrfinput_d01_2015-06-10_10:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e005 wrfbdy_d01_2015-06-10_10:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_10:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e005 wrfinput_d02_2015-06-10_10:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_10:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e005 wrfinput_d03_2015-06-10_10:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_10:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_10:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e006 wrfinput_d01_2015-06-10_10:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e006 wrfbdy_d01_2015-06-10_10:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_10:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e006 wrfinput_d02_2015-06-10_10:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_10:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e006 wrfinput_d03_2015-06-10_10:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_10:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_10:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e007 wrfinput_d01_2015-06-10_10:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e007 wrfbdy_d01_2015-06-10_10:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_10:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e007 wrfinput_d02_2015-06-10_10:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_10:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e007 wrfinput_d03_2015-06-10_10:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_10:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_10:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e008 wrfinput_d01_2015-06-10_10:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e008 wrfbdy_d01_2015-06-10_10:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_10:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e008 wrfinput_d02_2015-06-10_10:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_10:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e008 wrfinput_d03_2015-06-10_10:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_10:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_10:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e009 wrfinput_d01_2015-06-10_10:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e009 wrfbdy_d01_2015-06-10_10:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_10:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e009 wrfinput_d02_2015-06-10_10:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_10:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e009 wrfinput_d03_2015-06-10_10:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_10:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_10:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d01_2015-06-10_10:00:00.e010 wrfinput_d01_2015-06-10_10:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_bc/wrfbdy_d01_2015-06-10_10:00:00.e010 wrfbdy_d01_2015-06-10_10:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_10:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d02_2015-06-10_10:00:00.e010 wrfinput_d02_2015-06-10_10:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_10:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_met_ic/wrfinput_d03_2015-06-10_10:00:00.e010 wrfinput_d03_2015-06-10_10:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061010 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + LE_DATE=2015061011 + export LE_DATE + [[ 2015061010 -le 2015061011 ]] + echo 2015061010 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061010 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_10:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_10:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_10:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_10:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_10:00:00 wrfbiochemi_d01_2015-06-10_10:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_10:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_10:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_10:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2496 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_8249.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148950 + WRFCHEMI=wrfchemi_d02_2015-06-10_10:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_10:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_10:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_10:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_10:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_10:00:00 wrfchemi_d02_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_10:00:00 wrffirechemi_d02_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_10:00:00 wrfbiochemi_d02_2015-06-10_10:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_10:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_10:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_10:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2579 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_11853.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148951 + WRFCHEMI=wrfchemi_d03_2015-06-10_10:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_10:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_10:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_10:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_10:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_10:00:00 wrfchemi_d03_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_10:00:00 wrffirechemi_d03_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_10:00:00 wrfbiochemi_d03_2015-06-10_10:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_10:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_10:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_10:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2651 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_19589.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148952 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061011 ]] + echo 2015061011 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061010 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_11:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_11:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_11:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_10:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_10:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_11:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_11:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_11:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3024 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_29243.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148953 + WRFCHEMI=wrfchemi_d02_2015-06-10_11:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_11:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_11:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_10:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_10:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_11:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_11:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_11:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3079 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_10015.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148954 + WRFCHEMI=wrfchemi_d03_2015-06-10_11:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_11:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_11:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_10:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_10:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_11:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_11:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_11:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3151 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_5977.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148955 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061011 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_10:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_10:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_10:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 10 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=10 + export L_HH + D_DATE=2015061010 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=10 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=10 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=09 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=10 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061010.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061010.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 10 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=10 + export L_HH + D_DATE=2015061010 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=10 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=10 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=09 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=10 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061010.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061010.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/prepbufr_met_obs/obs_seq_prep_2015061010.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/prepbufr_met_obs/obs_seq_prep_2015061010.out ./obs_seq_MET_2015061010.out + FILE_LIST[1]=obs_seq_MET_2015061010.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/airnow_o3_obs/obs_seq_airnow_o3_2015061010.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/airnow_o3_obs/obs_seq_airnow_o3_2015061010.out ./obs_seq_AIR_O3_2015061010.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061010.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/tolnet_o3_obs/obs_seq_tolnet_o3_2015061010.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/tolnet_o3_obs/obs_seq_tolnet_o3_2015061010.out ./obs_seq_TOL_O3_2015061010.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061010.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061010.out\',\'obs_seq_AIR_O3_2015061010.out\',\'obs_seq_TOL_O3_2015061010.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=34200 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=37800 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 34200, last_obs_days = 151370, last_obs_seconds = 37800, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 4 17 11 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=34200 which is Gregorian day: 2015 Jun 10 09:30:00 Excluding observations after: day=151370, sec=37800 which is Gregorian day: 2015 Jun 10 10:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061010.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061010.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061010.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 3007 Number of obs really inserted : 3007 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061010.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 3007 Number of obs to be inserted : 919 Number of obs really inserted : 919 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 3926 Actual number of obs in the new seq file : 3926 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=34318 Gregorian day: 2015 Jun 10 09:31:58 Last obs time: day=151370, sec=37800 Gregorian day: 2015 Jun 10 10:30:00 Number of obs processed : 3926 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 84 obs RADIOSONDE_V_WIND_COMPONENT 84 obs RADIOSONDE_TEMPERATURE 92 obs RADIOSONDE_SPECIFIC_HUMIDITY 68 obs AIRCRAFT_TEMPERATURE 8 obs MARINE_SFC_U_WIND_COMPONENT 562 obs MARINE_SFC_V_WIND_COMPONENT 562 obs MARINE_SFC_TEMPERATURE 615 obs MARINE_SFC_SPECIFIC_HUMIDITY 151 obs LAND_SFC_U_WIND_COMPONENT 25 obs LAND_SFC_V_WIND_COMPONENT 25 obs LAND_SFC_TEMPERATURE 25 obs LAND_SFC_SPECIFIC_HUMIDITY 24 obs RADIOSONDE_SURFACE_ALTIMETER 1 obs MARINE_SFC_ALTIMETER 656 obs LAND_SFC_ALTIMETER 25 obs AIRNOW_O3 919 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 4 17 12 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061010.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_10:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_10:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_10:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_10:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_10:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_10:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34200, last_obs_days = 151370, last_obs_seconds = 37800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 10, 0, 0, last_bin_center = 2015, 6, 10, 10, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 34200, last_obs_days = 151370, last_obs_seconds = 37800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 34200, last_obs_days = 151370, last_obs_seconds = 37800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 39600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/combine_obs/obs_seq_comb_2015061010.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 36000 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148956 + mv obs_seq.new obs_seq_comb_filtered_2015061010.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061011 + export CYCLE_DATE + [[ 2015061011 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061011 + export DATE + echo 2015061011 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061011 + YY=15 + export YY + cut -c5-6 + echo 2015061011 + MM=06 + export MM + cut -c7-8 + echo 2015061011 + DD=10 + export DD + cut -c9-10 + echo 2015061011 + HH=11 + export HH + DATE_SHORT=15061011 + export DATE_SHORT + FILE_DATE=2015-06-10_11:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 -1 + 2> /dev/null + PAST_DATE=2015061010 + export PAST_DATE + cut -c1-4 + echo 2015061010 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061010 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061010 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061010 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061010 + PAST_HH=10 + export PAST_HH + PAST_FILE_DATE=2015-06-10_10:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +1 + 2> /dev/null + NEXT_DATE=2015061012 + export NEXT_DATE + cut -c1-4 + echo 2015061012 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061012 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061012 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061012 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061012 + NEXT_HH=12 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_12:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=11 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 11 + 0 )) + [[ 11 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=11 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 11 + 0 )) + D_DATE=2015061011 + export D_DATE + echo 2015061011 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 39600 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=39600 + export SEC_GREG + echo 2015061012 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 43200 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=43200 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 -30m + 2> /dev/null + ASIM_MIN_DATE=201506101030 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506101030 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506101030 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506101030 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506101030 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506101030 + ASIM_MIN_HH=10 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +30m + 2> /dev/null + ASIM_MAX_DATE=201506101130 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506101130 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506101130 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506101130 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506101130 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506101130 + ASIM_MAX_HH=11 + export ASIM_MAX_HH + echo 201506101030 201506101030 + echo 201506101030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 37800 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=37800 + export ASIM_MIN_SEC_GREG + echo 201506101130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 41400 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=41400 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061011 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061011 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + END_DATE=2015061012 + export END_DATE + cut -c1-4 + echo 2015061011 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061011 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061011 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061011 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061011 + START_HOUR=11 + export START_HOUR + START_FILE_DATE=2015-06-10_11:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061012 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061012 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061012 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061012 + END_HOUR=12 + export END_HOUR + END_FILE_DATE=2015-06-10_12:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061010/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=11,11,11 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=12,12,12 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_10:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_11:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506101030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 37800 + (( temp[1]=37800+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=37801 + export NL_FIRST_OBS_SECONDS + echo 201506101130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 41400 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=41400 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061011 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=11 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=11 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=43200 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 -30m + 2> /dev/null + ASIM_DATE_MIN=201506101030 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +30m + 2> /dev/null + ASIM_DATE_MAX=201506101130 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506101030 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506101030 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506101030 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506101030 + ASIM_MN_HH=10 + export ASIM_MN_HH + cut -c1-4 + echo 201506101130 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506101130 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506101130 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506101130 + ASIM_MX_HH=11 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + E_DATE=2015061012 + export E_DATE + cut -c1-4 + echo 2015061012 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061012 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061012 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061012 + E_HH=12 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061011 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + cut -c1-4 + echo 2015061011 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061011 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061011 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061011 + L_START_HOUR=11 + export L_START_HOUR + cut -c1-4 + echo 2015061012 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061012 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061012 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061012 + L_END_HOUR=12 + export L_END_HOUR + cut -c1-4 + echo 2015061011 + cut -c1-4 + echo 2015061011 + cut -c1-4 + echo 2015061011 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061011 + cut -c5-6 + echo 2015061011 + cut -c5-6 + echo 2015061011 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061011 + cut -c7-8 + echo 2015061011 + cut -c7-8 + echo 2015061011 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061011 + cut -c9-10 + echo 2015061011 + cut -c9-10 + echo 2015061011 + NL_START_HOUR=11,11,11 + export NL_START_HOUR + cut -c1-4 + echo 2015061012 + cut -c1-4 + echo 2015061012 + cut -c1-4 + echo 2015061012 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061012 + cut -c5-6 + echo 2015061012 + cut -c5-6 + echo 2015061012 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061012 + cut -c7-8 + echo 2015061012 + cut -c7-8 + echo 2015061012 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061012 + cut -c9-10 + echo 2015061012 + cut -c9-10 + echo 2015061012 + NL_END_HOUR=12,12,12 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_11:00:00\',\'2015-06-10_11:00:00\',\'2015-06-10_11:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_12:00:00\',\'2015-06-10_12:00:00\',\'2015-06-10_12:00:00\'' + export NL_END_DATE + P_DATE=2015061011 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + P_END_DATE=2015061012 + export P_END_DATE + [[ 2015061011 -le 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_11:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_10:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_11:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5108 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6240.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148957 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5121 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27305.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148958 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5135 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9198.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148959 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5162 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5866.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148960 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5177 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1827.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148961 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5190 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21221.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148962 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5217 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25036.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148963 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5231 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23260.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148964 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5244 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24182.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148965 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5271 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17124.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148966 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5285 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26366.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148967 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5298 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_745.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148968 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5326 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10886.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148969 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5339 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19141.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148970 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5352 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22356.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148971 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5380 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30482.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148972 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5393 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9227.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148973 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5406 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11662.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148974 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5434 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28244.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148975 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5447 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3273.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148976 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5460 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27718.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148977 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5488 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13697.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148978 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5501 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11445.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148979 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5514 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11080.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148980 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5543 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_357.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148981 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5556 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3580.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148982 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5569 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3683.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148983 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5598 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9704.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148984 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5611 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6440.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148985 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_11:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_11:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_10:30:00', / &wrfvar22 time_window_max = '2015-06-10_11:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_11:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5624 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17791.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148986 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_11:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_11:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_11:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + P_DATE=2015061012 + export P_DATE + [[ 2015061012 -le 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_12:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_11:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_12:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6240.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6086 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12670.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148987 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27305.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6100 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_923.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148988 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9198.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6115 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31707.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148989 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5866.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6143 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23282.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148990 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1827.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6157 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27926.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148991 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21221.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6171 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28732.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148992 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25036.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6199 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16838.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148993 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23260.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6213 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9102.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148994 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24182.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6226 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3934.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148995 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17124.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6254 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5359.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148996 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26366.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6267 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18644.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148997 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_745.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6281 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12393.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148998 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10886.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6309 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32182.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148999 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19141.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6322 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26153.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149000 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22356.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6336 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19927.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149001 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30482.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6363 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28567.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9227.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6377 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_335.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11662.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6390 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25909.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149004 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28244.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6418 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9678.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3273.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6431 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11323.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27718.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6445 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32491.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13697.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6472 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6688.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11445.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6486 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1432.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11080.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6499 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27876.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149010 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_357.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6527 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11375.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149011 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3580.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6541 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11326.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149012 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3683.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6554 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6967.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149013 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9704.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -f hhddmmyycc + NL_SEED_ARRAY1=1110061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061011 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + [[ 11 -ge 00 ]] + [[ 11 -lt 06 ]] + [[ 11 -ge 06 ]] + [[ 11 -lt 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6582 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11225.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149014 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6440.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6595 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19395.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149015 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17791.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 11,11,11, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 12,12,12, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=6609 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27701.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149016 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + P_DATE=2015061013 + export P_DATE + [[ 2015061013 -le 2015061012 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 11, 0, 0, last_bin_center = 2015, 6, 10, 11, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061011 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=23949 + [[ 2015061011 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7339 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_22798.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149017 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_11:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 11, 0, 0, last_bin_center = 2015, 6, 10, 11, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061011 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=23949 + [[ 2015061011 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7555 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_462.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149018 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_11:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 11, 0, 0, last_bin_center = 2015, 6, 10, 11, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061011 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=23949 + [[ 2015061011 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7766 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_22988.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149019 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_11:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 11, 0, 0, last_bin_center = 2015, 6, 10, 11, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061011 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=23949 + [[ 2015061011 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7977 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_24683.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149020 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_11:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 11, 0, 0, last_bin_center = 2015, 6, 10, 11, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061011 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=23949 + [[ 2015061011 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8188 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1555.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149021 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_11:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 11, 0, 0, last_bin_center = 2015, 6, 10, 11, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061011 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=23949 + [[ 2015061011 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8404 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8134.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149022 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_11:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 11, 0, 0, last_bin_center = 2015, 6, 10, 11, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061011 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=23949 + [[ 2015061011 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8615 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16883.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149023 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_11:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 11, 0, 0, last_bin_center = 2015, 6, 10, 11, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061011 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=23949 + [[ 2015061011 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8826 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31013.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149024 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_11:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 11, 0, 0, last_bin_center = 2015, 6, 10, 11, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061011 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=23949 + [[ 2015061011 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9037 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11703.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149025 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_11:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 11, 0, 0, last_bin_center = 2015, 6, 10, 11, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061010.out','obs_seq_AIR_O3_2015061010.out','obs_seq_TOL_O3_2015061010.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37801, last_obs_days = 151370, last_obs_seconds = 41400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061011 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=23949 + [[ 2015061011 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9250 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_23419.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149026 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_11:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_11:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfinput_d02_2015-06-10_11:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfinput_d03_2015-06-10_11:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfinput_d02_2015-06-10_11:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfinput_d03_2015-06-10_11:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi + L_DATE=2015061011 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + LE_DATE=2015061012 + export LE_DATE + [[ 2015061011 -le 2015061012 ]] + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_11:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_11:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_11:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_11:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_11:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_12:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_12:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_12:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_12:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061011 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149027 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=11 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_11:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_11:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfinput_d01_2015-06-10_11:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 ./. + mv wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e000 + mv wrfbdy_d01_2015-06-10_11:00:00 wrfbdy_d01_2015-06-10_11:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9514 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_11:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.9514 rm -f tmp.9514 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_11:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_11:00:00.e000 set files = ( wrfinput_d01_2015-06-10_11:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_11:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9583 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_11:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.9583 rm -f tmp.9583 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_11:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_11:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_11:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_11:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.9583 rm -f tmp.9583 if ( wrfinput_d01_2015-06-10_11:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_11:00:00.e000 echo wrfinput_d01_2015-06-10_11:00:00.e000 wrfinput_d01_2015-06-10_11:00:00.e000 ln -s wrfinput_d01_2015-06-10_11:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_11:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_11:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_11:00:00.e000 wrfinput_d01_2015-06-10_11:00:00 + mv wrfbdy_d01_2015-06-10_11:00:00.e000 wrfbdy_d01_2015-06-10_11:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=11 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_11:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_11:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9668 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_11:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.9668 rm -f tmp.9668 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_11:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_11:00:00.e001 set files = ( wrfinput_d01_2015-06-10_11:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9736 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_11:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.9736 rm -f tmp.9736 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_11:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_11:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_11:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.9736 rm -f tmp.9736 if ( wrfinput_d01_2015-06-10_11:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 echo wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 ln -s wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_11:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_11:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_11:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_11:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9818 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_11:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.9818 rm -f tmp.9818 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_11:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_11:00:00.e002 set files = ( wrfinput_d01_2015-06-10_11:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9886 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_11:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.9886 rm -f tmp.9886 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_11:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_11:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_11:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.9886 rm -f tmp.9886 if ( wrfinput_d01_2015-06-10_11:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 echo wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 ln -s wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_11:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_11:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_11:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_11:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9968 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_11:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.9968 rm -f tmp.9968 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_11:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_11:00:00.e003 set files = ( wrfinput_d01_2015-06-10_11:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10035 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_11:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.10035 rm -f tmp.10035 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_11:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_11:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_11:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.10035 rm -f tmp.10035 if ( wrfinput_d01_2015-06-10_11:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 echo wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 ln -s wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_11:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_11:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_11:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_11:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10117 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_11:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.10117 rm -f tmp.10117 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_11:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_11:00:00.e004 set files = ( wrfinput_d01_2015-06-10_11:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10185 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_11:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.10185 rm -f tmp.10185 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_11:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_11:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_11:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.10185 rm -f tmp.10185 if ( wrfinput_d01_2015-06-10_11:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 echo wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 ln -s wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_11:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_11:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_11:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_11:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10268 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_11:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.10268 rm -f tmp.10268 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_11:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_11:00:00.e005 set files = ( wrfinput_d01_2015-06-10_11:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10336 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_11:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.10336 rm -f tmp.10336 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_11:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_11:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_11:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.10336 rm -f tmp.10336 if ( wrfinput_d01_2015-06-10_11:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 echo wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 ln -s wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_11:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_11:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_11:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_11:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10418 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_11:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.10418 rm -f tmp.10418 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_11:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_11:00:00.e006 set files = ( wrfinput_d01_2015-06-10_11:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10486 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_11:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.10486 rm -f tmp.10486 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_11:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_11:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_11:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.10486 rm -f tmp.10486 if ( wrfinput_d01_2015-06-10_11:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 echo wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 ln -s wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_11:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_11:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_11:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_11:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10568 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_11:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.10568 rm -f tmp.10568 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_11:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_11:00:00.e007 set files = ( wrfinput_d01_2015-06-10_11:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10635 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_11:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.10635 rm -f tmp.10635 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_11:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_11:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_11:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.10635 rm -f tmp.10635 if ( wrfinput_d01_2015-06-10_11:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 echo wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 ln -s wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_11:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_11:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_11:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_11:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10717 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_11:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.10717 rm -f tmp.10717 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_11:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_11:00:00.e008 set files = ( wrfinput_d01_2015-06-10_11:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_11:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10785 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_11:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.10785 rm -f tmp.10785 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_11:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_11:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_11:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01_2015-06-10_11:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.10785 rm -f tmp.10785 if ( wrfinput_d01_2015-06-10_11:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01_2015-06-10_11:00:00.e008 echo wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01_2015-06-10_11:00:00.e008 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01_2015-06-10_11:00:00.e008 ln -s wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_11:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_11:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_11:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_11:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10867 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_11:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.10867 rm -f tmp.10867 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_11:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_11:00:00.e009 set files = ( wrfinput_d01_2015-06-10_11:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_11:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10935 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_11:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.10935 rm -f tmp.10935 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_11:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_11:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_11:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01_2015-06-10_11:00:00.e008 wrfinput_d01_2015-06-10_11:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.10935 rm -f tmp.10935 if ( wrfinput_d01_2015-06-10_11:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01_2015-06-10_11:00:00.e008 wrfinput_d01_2015-06-10_11:00:00.e009 echo wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01_2015-06-10_11:00:00.e008 wrfinput_d01_2015-06-10_11:00:00.e009 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01_2015-06-10_11:00:00.e008 wrfinput_d01_2015-06-10_11:00:00.e009 ln -s wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_11:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_11:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_11:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_11:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11017 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_11:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.11017 rm -f tmp.11017 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_11:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_11:00:00.e010 set files = ( wrfinput_d01_2015-06-10_11:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_11:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_11:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_11:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_11:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11085 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_11:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.11085 rm -f tmp.11085 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_11:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_11:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_11:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01_2015-06-10_11:00:00.e008 wrfinput_d01_2015-06-10_11:00:00.e009 wrfinput_d01_2015-06-10_11:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.11085 rm -f tmp.11085 if ( wrfinput_d01_2015-06-10_11:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01_2015-06-10_11:00:00.e008 wrfinput_d01_2015-06-10_11:00:00.e009 wrfinput_d01_2015-06-10_11:00:00.e010 echo wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01_2015-06-10_11:00:00.e008 wrfinput_d01_2015-06-10_11:00:00.e009 wrfinput_d01_2015-06-10_11:00:00.e010 wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01_2015-06-10_11:00:00.e008 wrfinput_d01_2015-06-10_11:00:00.e009 wrfinput_d01_2015-06-10_11:00:00.e010 ln -s wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_11:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_11:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_11:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_11:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_11:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149028 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=11 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_11:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfinput_d02_2015-06-10_11:00:00 ./. + mv wrfinput_d02_2015-06-10_11:00:00 wrfinput_d02_2015-06-10_11:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.11206 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_11:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.11206 rm -f tmp.11206 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_11:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_11:00:00.e000 set files = ( wrfinput_d02_2015-06-10_11:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_11:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_11:00:00.e000 wrfinput_d02_2015-06-10_11:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=11 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_11:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.11280 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_11:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.11280 rm -f tmp.11280 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_11:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_11:00:00.e001 set files = ( wrfinput_d02_2015-06-10_11:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_11:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_11:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.11352 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_11:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.11352 rm -f tmp.11352 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_11:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_11:00:00.e002 set files = ( wrfinput_d02_2015-06-10_11:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_11:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_11:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.11424 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_11:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.11424 rm -f tmp.11424 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_11:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_11:00:00.e003 set files = ( wrfinput_d02_2015-06-10_11:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_11:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_11:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.11496 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_11:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.11496 rm -f tmp.11496 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_11:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_11:00:00.e004 set files = ( wrfinput_d02_2015-06-10_11:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_11:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_11:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.11572 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_11:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.11572 rm -f tmp.11572 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_11:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_11:00:00.e005 set files = ( wrfinput_d02_2015-06-10_11:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_11:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_11:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.11645 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_11:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.11645 rm -f tmp.11645 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_11:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_11:00:00.e006 set files = ( wrfinput_d02_2015-06-10_11:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_11:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_11:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.11717 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_11:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.11717 rm -f tmp.11717 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_11:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_11:00:00.e007 set files = ( wrfinput_d02_2015-06-10_11:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_11:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_11:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.11789 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_11:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.11789 rm -f tmp.11789 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_11:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_11:00:00.e008 set files = ( wrfinput_d02_2015-06-10_11:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_11:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_11:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.11861 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_11:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.11861 rm -f tmp.11861 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_11:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_11:00:00.e009 set files = ( wrfinput_d02_2015-06-10_11:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_11:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_11:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.11935 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_11:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.11935 rm -f tmp.11935 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_11:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_11:00:00.e010 set files = ( wrfinput_d02_2015-06-10_11:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_11:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_11:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_11:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_11:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149029 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=11 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_11:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfinput_d03_2015-06-10_11:00:00 ./. + mv wrfinput_d03_2015-06-10_11:00:00 wrfinput_d03_2015-06-10_11:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.12166 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_11:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.12166 rm -f tmp.12166 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_11:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_11:00:00.e000 set files = ( wrfinput_d03_2015-06-10_11:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_11:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_11:00:00.e000 wrfinput_d03_2015-06-10_11:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=11 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_11:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.12240 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_11:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.12240 rm -f tmp.12240 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_11:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_11:00:00.e001 set files = ( wrfinput_d03_2015-06-10_11:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_11:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_11:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.12312 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_11:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.12312 rm -f tmp.12312 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_11:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_11:00:00.e002 set files = ( wrfinput_d03_2015-06-10_11:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_11:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_11:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.12384 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_11:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.12384 rm -f tmp.12384 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_11:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_11:00:00.e003 set files = ( wrfinput_d03_2015-06-10_11:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_11:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_11:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.12456 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_11:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.12456 rm -f tmp.12456 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_11:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_11:00:00.e004 set files = ( wrfinput_d03_2015-06-10_11:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_11:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_11:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.12529 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_11:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.12529 rm -f tmp.12529 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_11:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_11:00:00.e005 set files = ( wrfinput_d03_2015-06-10_11:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_11:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_11:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.12602 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_11:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.12602 rm -f tmp.12602 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_11:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_11:00:00.e006 set files = ( wrfinput_d03_2015-06-10_11:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_11:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_11:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.12674 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_11:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.12674 rm -f tmp.12674 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_11:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_11:00:00.e007 set files = ( wrfinput_d03_2015-06-10_11:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_11:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_11:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.12746 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_11:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.12746 rm -f tmp.12746 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_11:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_11:00:00.e008 set files = ( wrfinput_d03_2015-06-10_11:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_11:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_11:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.12818 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_11:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.12818 rm -f tmp.12818 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_11:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_11:00:00.e009 set files = ( wrfinput_d03_2015-06-10_11:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_11:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_11:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.12890 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_11:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.12890 rm -f tmp.12890 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_11:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_11:00:00.e010 set files = ( wrfinput_d03_2015-06-10_11:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_11:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_11:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_11:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_11:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_11:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_11:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01_2015-06-10_11:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfbdy_d01_2015-06-10_11:00:00 wrfbdy_d01_2015-06-10_11:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_11:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfinput_d02_2015-06-10_11:00:00 wrfinput_d02_2015-06-10_11:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_11:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/real/wrfinput_d03_2015-06-10_11:00:00 wrfinput_d03_2015-06-10_11:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_11:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_11:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01_2015-06-10_11:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e001 wrfbdy_d01_2015-06-10_11:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_11:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e001 wrfinput_d02_2015-06-10_11:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_11:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e001 wrfinput_d03_2015-06-10_11:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_11:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_11:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e002 wrfinput_d01_2015-06-10_11:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e002 wrfbdy_d01_2015-06-10_11:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_11:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e002 wrfinput_d02_2015-06-10_11:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_11:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e002 wrfinput_d03_2015-06-10_11:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_11:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_11:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e003 wrfinput_d01_2015-06-10_11:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e003 wrfbdy_d01_2015-06-10_11:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_11:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e003 wrfinput_d02_2015-06-10_11:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_11:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e003 wrfinput_d03_2015-06-10_11:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_11:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_11:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e004 wrfinput_d01_2015-06-10_11:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e004 wrfbdy_d01_2015-06-10_11:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_11:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e004 wrfinput_d02_2015-06-10_11:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_11:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e004 wrfinput_d03_2015-06-10_11:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_11:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_11:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e005 wrfinput_d01_2015-06-10_11:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e005 wrfbdy_d01_2015-06-10_11:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_11:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e005 wrfinput_d02_2015-06-10_11:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_11:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e005 wrfinput_d03_2015-06-10_11:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_11:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_11:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e006 wrfinput_d01_2015-06-10_11:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e006 wrfbdy_d01_2015-06-10_11:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_11:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e006 wrfinput_d02_2015-06-10_11:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_11:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e006 wrfinput_d03_2015-06-10_11:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_11:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_11:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e007 wrfinput_d01_2015-06-10_11:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e007 wrfbdy_d01_2015-06-10_11:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_11:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e007 wrfinput_d02_2015-06-10_11:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_11:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e007 wrfinput_d03_2015-06-10_11:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_11:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_11:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e008 wrfinput_d01_2015-06-10_11:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e008 wrfbdy_d01_2015-06-10_11:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_11:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e008 wrfinput_d02_2015-06-10_11:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_11:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e008 wrfinput_d03_2015-06-10_11:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_11:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_11:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e009 wrfinput_d01_2015-06-10_11:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e009 wrfbdy_d01_2015-06-10_11:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_11:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e009 wrfinput_d02_2015-06-10_11:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_11:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e009 wrfinput_d03_2015-06-10_11:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_11:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_11:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d01_2015-06-10_11:00:00.e010 wrfinput_d01_2015-06-10_11:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_bc/wrfbdy_d01_2015-06-10_11:00:00.e010 wrfbdy_d01_2015-06-10_11:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_11:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d02_2015-06-10_11:00:00.e010 wrfinput_d02_2015-06-10_11:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_11:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_met_ic/wrfinput_d03_2015-06-10_11:00:00.e010 wrfinput_d03_2015-06-10_11:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061011 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + LE_DATE=2015061012 + export LE_DATE + [[ 2015061011 -le 2015061012 ]] + echo 2015061011 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061011 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_11:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_11:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_11:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_11:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_11:00:00 wrfbiochemi_d01_2015-06-10_11:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_11:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_11:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_11:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13373 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_4327.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149030 + WRFCHEMI=wrfchemi_d02_2015-06-10_11:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_11:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_11:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_11:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_11:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_11:00:00 wrfchemi_d02_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_11:00:00 wrffirechemi_d02_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_11:00:00 wrfbiochemi_d02_2015-06-10_11:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_11:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_11:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_11:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13424 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_3198.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149031 + WRFCHEMI=wrfchemi_d03_2015-06-10_11:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_11:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_11:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_11:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_11:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_11:00:00 wrfchemi_d03_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_11:00:00 wrffirechemi_d03_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_11:00:00 wrfbiochemi_d03_2015-06-10_11:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_11:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_11:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_11:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13617 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_9065.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149032 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + echo 2015061012 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061011 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_12:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_12:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_12:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_11:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_11:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_12:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_12:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_12:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13846 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_15689.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149033 + WRFCHEMI=wrfchemi_d02_2015-06-10_12:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_12:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_12:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_11:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_11:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_12:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_12:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_12:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13904 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_12749.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149034 + WRFCHEMI=wrfchemi_d03_2015-06-10_12:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_12:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_12:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_11:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_11:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_12:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_12:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_12:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13963 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_23716.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149035 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_11:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_11:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_11:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 11 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=11 + export L_HH + D_DATE=2015061011 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=11 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=11 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=10 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=11 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061011.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061011.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 11 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=11 + export L_HH + D_DATE=2015061011 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=11 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=11 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=10 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=11 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061011.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061011.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/prepbufr_met_obs/obs_seq_prep_2015061011.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/prepbufr_met_obs/obs_seq_prep_2015061011.out ./obs_seq_MET_2015061011.out + FILE_LIST[1]=obs_seq_MET_2015061011.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/airnow_o3_obs/obs_seq_airnow_o3_2015061011.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/airnow_o3_obs/obs_seq_airnow_o3_2015061011.out ./obs_seq_AIR_O3_2015061011.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061011.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/tolnet_o3_obs/obs_seq_tolnet_o3_2015061011.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/tolnet_o3_obs/obs_seq_tolnet_o3_2015061011.out ./obs_seq_TOL_O3_2015061011.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061011.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061011.out\',\'obs_seq_AIR_O3_2015061011.out\',\'obs_seq_TOL_O3_2015061011.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=37800 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=41400 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 37800, last_obs_days = 151370, last_obs_seconds = 41400, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 4 41 37 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=37800 which is Gregorian day: 2015 Jun 10 10:30:00 Excluding observations after: day=151370, sec=41400 which is Gregorian day: 2015 Jun 10 11:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061011.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061011.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061011.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 19059 Number of obs really inserted : 19059 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061011.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 19059 Number of obs to be inserted : 945 Number of obs really inserted : 945 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 20004 Actual number of obs in the new seq file : 20004 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=37800 Gregorian day: 2015 Jun 10 10:30:00 Last obs time: day=151370, sec=41400 Gregorian day: 2015 Jun 10 11:30:00 Number of obs processed : 20004 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 58 obs RADIOSONDE_V_WIND_COMPONENT 58 obs RADIOSONDE_TEMPERATURE 48 obs RADIOSONDE_SPECIFIC_HUMIDITY 46 obs AIRCRAFT_TEMPERATURE 1 obs MARINE_SFC_U_WIND_COMPONENT 706 obs MARINE_SFC_V_WIND_COMPONENT 706 obs MARINE_SFC_TEMPERATURE 780 obs MARINE_SFC_SPECIFIC_HUMIDITY 170 obs LAND_SFC_U_WIND_COMPONENT 25 obs LAND_SFC_V_WIND_COMPONENT 25 obs LAND_SFC_TEMPERATURE 25 obs LAND_SFC_SPECIFIC_HUMIDITY 24 obs SAT_U_WIND_COMPONENT 7767 obs SAT_V_WIND_COMPONENT 7767 obs RADIOSONDE_SURFACE_ALTIMETER 1 obs MARINE_SFC_ALTIMETER 827 obs LAND_SFC_ALTIMETER 25 obs AIRNOW_O3 945 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 4 41 38 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061011.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_11:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_11:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_11:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_11:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_11:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_11:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37800, last_obs_days = 151370, last_obs_seconds = 41400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 11, 0, 0, last_bin_center = 2015, 6, 10, 11, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 37800, last_obs_days = 151370, last_obs_seconds = 41400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 37800, last_obs_days = 151370, last_obs_seconds = 41400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/combine_obs/obs_seq_comb_2015061011.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 39600 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149037 + mv obs_seq.new obs_seq_comb_filtered_2015061011.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061012 + export CYCLE_DATE + [[ 2015061012 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061012 + export DATE + echo 2015061012 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061012 + YY=15 + export YY + cut -c5-6 + echo 2015061012 + MM=06 + export MM + cut -c7-8 + echo 2015061012 + DD=10 + export DD + cut -c9-10 + echo 2015061012 + HH=12 + export HH + DATE_SHORT=15061012 + export DATE_SHORT + FILE_DATE=2015-06-10_12:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 -1 + 2> /dev/null + PAST_DATE=2015061011 + export PAST_DATE + cut -c1-4 + echo 2015061011 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061011 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061011 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061011 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061011 + PAST_HH=11 + export PAST_HH + PAST_FILE_DATE=2015-06-10_11:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + NEXT_DATE=2015061013 + export NEXT_DATE + cut -c1-4 + echo 2015061013 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061013 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061013 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061013 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061013 + NEXT_HH=13 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_13:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=12 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 12 + 0 )) + [[ 12 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=12 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 12 + 0 )) + D_DATE=2015061012 + export D_DATE + echo 2015061012 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 43200 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=43200 + export SEC_GREG + echo 2015061013 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 46800 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=46800 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 -30m + 2> /dev/null + ASIM_MIN_DATE=201506101130 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506101130 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506101130 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506101130 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506101130 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506101130 + ASIM_MIN_HH=11 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +30m + 2> /dev/null + ASIM_MAX_DATE=201506101230 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506101230 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506101230 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506101230 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506101230 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506101230 + ASIM_MAX_HH=12 + export ASIM_MAX_HH + echo 201506101130 201506101130 + echo 201506101130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 41400 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=41400 + export ASIM_MIN_SEC_GREG + echo 201506101230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 45000 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=45000 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061012 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061012 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + END_DATE=2015061013 + export END_DATE + cut -c1-4 + echo 2015061012 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061012 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061012 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061012 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061012 + START_HOUR=12 + export START_HOUR + START_FILE_DATE=2015-06-10_12:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061013 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061013 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061013 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061013 + END_HOUR=13 + export END_HOUR + END_FILE_DATE=2015-06-10_13:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061011/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=12,12,12 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=13,13,13 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_11:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_12:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506101130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 41400 + (( temp[1]=41400+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=41401 + export NL_FIRST_OBS_SECONDS + echo 201506101230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 45000 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=45000 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061012 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=12 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=12 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=46800 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 -30m + 2> /dev/null + ASIM_DATE_MIN=201506101130 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +30m + 2> /dev/null + ASIM_DATE_MAX=201506101230 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506101130 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506101130 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506101130 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506101130 + ASIM_MN_HH=11 + export ASIM_MN_HH + cut -c1-4 + echo 201506101230 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506101230 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506101230 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506101230 + ASIM_MX_HH=12 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + E_DATE=2015061013 + export E_DATE + cut -c1-4 + echo 2015061013 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061013 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061013 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061013 + E_HH=13 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061012 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_END_DATE=2015061013 + export L_END_DATE + cut -c1-4 + echo 2015061012 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061012 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061012 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061012 + L_START_HOUR=12 + export L_START_HOUR + cut -c1-4 + echo 2015061013 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061013 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061013 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061013 + L_END_HOUR=13 + export L_END_HOUR + cut -c1-4 + echo 2015061012 + cut -c1-4 + echo 2015061012 + cut -c1-4 + echo 2015061012 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061012 + cut -c5-6 + echo 2015061012 + cut -c5-6 + echo 2015061012 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061012 + cut -c7-8 + echo 2015061012 + cut -c7-8 + echo 2015061012 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061012 + cut -c9-10 + echo 2015061012 + cut -c9-10 + echo 2015061012 + NL_START_HOUR=12,12,12 + export NL_START_HOUR + cut -c1-4 + echo 2015061013 + cut -c1-4 + echo 2015061013 + cut -c1-4 + echo 2015061013 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061013 + cut -c5-6 + echo 2015061013 + cut -c5-6 + echo 2015061013 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061013 + cut -c7-8 + echo 2015061013 + cut -c7-8 + echo 2015061013 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061013 + cut -c9-10 + echo 2015061013 + cut -c9-10 + echo 2015061013 + NL_END_HOUR=13,13,13 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_12:00:00\',\'2015-06-10_12:00:00\',\'2015-06-10_12:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_13:00:00\',\'2015-06-10_13:00:00\',\'2015-06-10_13:00:00\'' + export NL_END_DATE + P_DATE=2015061012 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + P_END_DATE=2015061013 + export P_END_DATE + [[ 2015061012 -le 2015061013 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_12:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_11:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_12:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15874 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25642.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149049 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15888 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8761.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149050 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15901 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5165.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149051 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15929 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25470.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149052 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15942 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6868.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149053 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15956 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18726.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149054 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15983 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25304.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149055 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15998 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13160.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149056 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16011 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32299.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149057 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16038 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21199.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149058 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16052 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16619.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149059 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16065 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8748.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149060 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16093 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15590.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149061 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16107 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26776.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149062 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16120 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6134.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149063 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16148 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6531.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149064 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16161 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20794.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149065 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16174 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10692.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149066 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16202 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2109.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149067 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16215 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9340.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149068 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16228 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4265.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149069 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16256 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25237.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149070 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16269 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31270.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149071 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16282 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11868.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149072 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16310 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10819.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149073 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16323 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2247.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149074 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16336 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13014.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149075 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16364 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11906.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149076 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16377 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4235.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149077 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_11:30:00', / &wrfvar22 time_window_max = '2015-06-10_12:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16390 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9112.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149078 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_12:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_12:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + P_DATE=2015061013 + export P_DATE + [[ 2015061013 -le 2015061013 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_13:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_12:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_13:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25642.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16702 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30418.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149089 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8761.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16716 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6252.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149090 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5165.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16729 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4723.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149091 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25470.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16757 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2376.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149092 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6868.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16771 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27198.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149093 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18726.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16784 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23390.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149094 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25304.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16812 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5920.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149095 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13160.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16825 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3915.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149096 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32299.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16839 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6366.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149097 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21199.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16866 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12776.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149098 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16619.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16880 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24904.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149099 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8748.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16893 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7006.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149100 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15590.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16921 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_170.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149101 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26776.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16939 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20653.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149102 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6134.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16952 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29033.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149103 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6531.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16980 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3971.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149105 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20794.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16993 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31457.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149106 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10692.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17007 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1190.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149107 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2109.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17034 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27302.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149108 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9340.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17048 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3964.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149109 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4265.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17061 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32621.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149110 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25237.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17089 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20164.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149111 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31270.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17103 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_951.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149112 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11868.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17116 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7539.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149113 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10819.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17144 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25315.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149114 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2247.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17157 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1179.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149115 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13014.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17171 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22492.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149116 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11906.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + [[ 12 -ge 00 ]] + [[ 12 -lt 06 ]] + [[ 12 -ge 06 ]] + [[ 12 -lt 12 ]] + [[ 12 -ge 12 ]] + [[ 12 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17198 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30638.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149117 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4235.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17212 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28769.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149118 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9112.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 12,12,12, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 13,13,13, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17226 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22040.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149119 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + P_DATE=2015061014 + export P_DATE + [[ 2015061014 -le 2015061013 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_END_DATE=2015061013 + export L_END_DATE + TRANDOM=23949 + [[ 2015061012 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + NEXT_L_DATE=2015061013 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_13:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17564 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19421.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149128 + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_END_DATE=2015061013 + export L_END_DATE + TRANDOM=23949 + [[ 2015061012 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + NEXT_L_DATE=2015061013 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_13:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17900 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21898.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149130 + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_END_DATE=2015061013 + export L_END_DATE + TRANDOM=23949 + [[ 2015061012 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + NEXT_L_DATE=2015061013 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_13:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18111 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28940.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149131 + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_END_DATE=2015061013 + export L_END_DATE + TRANDOM=23949 + [[ 2015061012 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + NEXT_L_DATE=2015061013 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_13:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18322 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20029.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149133 + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_END_DATE=2015061013 + export L_END_DATE + TRANDOM=23949 + [[ 2015061012 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + NEXT_L_DATE=2015061013 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_13:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18534 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9965.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149134 + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_END_DATE=2015061013 + export L_END_DATE + TRANDOM=23949 + [[ 2015061012 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + NEXT_L_DATE=2015061013 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_13:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18750 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16647.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149135 + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_END_DATE=2015061013 + export L_END_DATE + TRANDOM=23949 + [[ 2015061012 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + NEXT_L_DATE=2015061013 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_13:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18961 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_29895.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149136 + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_END_DATE=2015061013 + export L_END_DATE + TRANDOM=23949 + [[ 2015061012 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + NEXT_L_DATE=2015061013 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_13:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=19172 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2807.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149137 + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_END_DATE=2015061013 + export L_END_DATE + TRANDOM=23949 + [[ 2015061012 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + NEXT_L_DATE=2015061013 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_13:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=19383 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_24815.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149138 + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061011.out','obs_seq_AIR_O3_2015061011.out','obs_seq_TOL_O3_2015061011.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41401, last_obs_days = 151370, last_obs_seconds = 45000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_END_DATE=2015061013 + export L_END_DATE + TRANDOM=23949 + [[ 2015061012 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + NEXT_L_DATE=2015061013 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_13:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=19596 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11007.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149139 + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -lt 2015061013 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfinput_d02_2015-06-10_12:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfinput_d03_2015-06-10_12:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfinput_d02_2015-06-10_12:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfinput_d03_2015-06-10_12:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + LE_DATE=2015061013 + export LE_DATE + [[ 2015061012 -le 2015061013 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_12:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_12:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_12:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_12:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061013 ]] + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_13:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_13:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_13:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_13:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_13:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061013 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061012 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149140 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=12 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_12:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_12:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfinput_d01_2015-06-10_12:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 ./. + mv wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e000 + mv wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_d01_2015-06-10_12:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19733 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_12:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.19733 rm -f tmp.19733 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e000 set files = ( wrfinput_d01_2015-06-10_12:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19805 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.19805 rm -f tmp.19805 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.19805 rm -f tmp.19805 if ( wrfinput_d01_2015-06-10_12:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00.e000 echo wrfinput_d01_2015-06-10_12:00:00.e000 wrfinput_d01_2015-06-10_12:00:00.e000 ln -s wrfinput_d01_2015-06-10_12:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_12:00:00.e000 wrfinput_d01_2015-06-10_12:00:00 + mv wrfbdy_d01_2015-06-10_12:00:00.e000 wrfbdy_d01_2015-06-10_12:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=12 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19891 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_12:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.19891 rm -f tmp.19891 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e001 set files = ( wrfinput_d01_2015-06-10_12:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19958 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.19958 rm -f tmp.19958 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.19958 rm -f tmp.19958 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20040 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_12:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.20040 rm -f tmp.20040 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e002 set files = ( wrfinput_d01_2015-06-10_12:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20108 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.20108 rm -f tmp.20108 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.20108 rm -f tmp.20108 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20190 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_12:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.20190 rm -f tmp.20190 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e003 set files = ( wrfinput_d01_2015-06-10_12:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20258 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.20258 rm -f tmp.20258 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.20258 rm -f tmp.20258 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20340 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_12:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.20340 rm -f tmp.20340 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e004 set files = ( wrfinput_d01_2015-06-10_12:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20407 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.20407 rm -f tmp.20407 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.20407 rm -f tmp.20407 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20489 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_12:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.20489 rm -f tmp.20489 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e005 set files = ( wrfinput_d01_2015-06-10_12:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20557 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.20557 rm -f tmp.20557 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.20557 rm -f tmp.20557 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20639 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_12:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.20639 rm -f tmp.20639 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e006 set files = ( wrfinput_d01_2015-06-10_12:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20707 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.20707 rm -f tmp.20707 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.20707 rm -f tmp.20707 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20789 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_12:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.20789 rm -f tmp.20789 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e007 set files = ( wrfinput_d01_2015-06-10_12:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20856 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.20856 rm -f tmp.20856 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.20856 rm -f tmp.20856 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20938 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_12:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.20938 rm -f tmp.20938 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e008 set files = ( wrfinput_d01_2015-06-10_12:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21006 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.21006 rm -f tmp.21006 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.21006 rm -f tmp.21006 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21088 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_12:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.21088 rm -f tmp.21088 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e009 set files = ( wrfinput_d01_2015-06-10_12:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21155 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.21155 rm -f tmp.21155 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.21155 rm -f tmp.21155 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21237 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_12:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21237 rm -f tmp.21237 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e010 set files = ( wrfinput_d01_2015-06-10_12:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.21305 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21305 rm -f tmp.21305 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_d01_2015-06-10_12:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21305 rm -f tmp.21305 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_d01_2015-06-10_12:00:00.e010 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_d01_2015-06-10_12:00:00.e010 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_d01_2015-06-10_12:00:00.e010 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149141 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=12 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_12:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfinput_d02_2015-06-10_12:00:00 ./. + mv wrfinput_d02_2015-06-10_12:00:00 wrfinput_d02_2015-06-10_12:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.21545 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_12:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.21545 rm -f tmp.21545 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_12:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_12:00:00.e000 set files = ( wrfinput_d02_2015-06-10_12:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_12:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_12:00:00.e000 wrfinput_d02_2015-06-10_12:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=12 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_12:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.21619 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_12:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.21619 rm -f tmp.21619 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_12:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_12:00:00.e001 set files = ( wrfinput_d02_2015-06-10_12:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_12:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_12:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.21691 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_12:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.21691 rm -f tmp.21691 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_12:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_12:00:00.e002 set files = ( wrfinput_d02_2015-06-10_12:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_12:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_12:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.21764 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_12:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.21764 rm -f tmp.21764 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_12:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_12:00:00.e003 set files = ( wrfinput_d02_2015-06-10_12:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_12:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_12:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.21836 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_12:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.21836 rm -f tmp.21836 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_12:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_12:00:00.e004 set files = ( wrfinput_d02_2015-06-10_12:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_12:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_12:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.21909 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_12:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.21909 rm -f tmp.21909 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_12:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_12:00:00.e005 set files = ( wrfinput_d02_2015-06-10_12:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_12:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_12:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.21987 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_12:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.21987 rm -f tmp.21987 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_12:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_12:00:00.e006 set files = ( wrfinput_d02_2015-06-10_12:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_12:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_12:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.22059 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_12:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.22059 rm -f tmp.22059 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_12:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_12:00:00.e007 set files = ( wrfinput_d02_2015-06-10_12:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_12:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_12:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.22131 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_12:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.22131 rm -f tmp.22131 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_12:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_12:00:00.e008 set files = ( wrfinput_d02_2015-06-10_12:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_12:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_12:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.22203 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_12:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.22203 rm -f tmp.22203 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_12:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_12:00:00.e009 set files = ( wrfinput_d02_2015-06-10_12:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_12:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_12:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.22275 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_12:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.22275 rm -f tmp.22275 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_12:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_12:00:00.e010 set files = ( wrfinput_d02_2015-06-10_12:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_12:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_12:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_12:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_12:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149142 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=12 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_12:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfinput_d03_2015-06-10_12:00:00 ./. + mv wrfinput_d03_2015-06-10_12:00:00 wrfinput_d03_2015-06-10_12:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.22385 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_12:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.22385 rm -f tmp.22385 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_12:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_12:00:00.e000 set files = ( wrfinput_d03_2015-06-10_12:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_12:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_12:00:00.e000 wrfinput_d03_2015-06-10_12:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=12 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_12:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.22461 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_12:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.22461 rm -f tmp.22461 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_12:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_12:00:00.e001 set files = ( wrfinput_d03_2015-06-10_12:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_12:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_12:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.22533 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_12:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.22533 rm -f tmp.22533 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_12:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_12:00:00.e002 set files = ( wrfinput_d03_2015-06-10_12:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_12:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_12:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.22605 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_12:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.22605 rm -f tmp.22605 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_12:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_12:00:00.e003 set files = ( wrfinput_d03_2015-06-10_12:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_12:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_12:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.22677 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_12:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.22677 rm -f tmp.22677 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_12:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_12:00:00.e004 set files = ( wrfinput_d03_2015-06-10_12:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_12:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_12:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.22749 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_12:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.22749 rm -f tmp.22749 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_12:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_12:00:00.e005 set files = ( wrfinput_d03_2015-06-10_12:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_12:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_12:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.22821 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_12:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.22821 rm -f tmp.22821 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_12:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_12:00:00.e006 set files = ( wrfinput_d03_2015-06-10_12:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_12:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_12:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.22893 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_12:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.22893 rm -f tmp.22893 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_12:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_12:00:00.e007 set files = ( wrfinput_d03_2015-06-10_12:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_12:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_12:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.22965 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_12:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.22965 rm -f tmp.22965 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_12:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_12:00:00.e008 set files = ( wrfinput_d03_2015-06-10_12:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_12:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_12:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.23037 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_12:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.23037 rm -f tmp.23037 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_12:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_12:00:00.e009 set files = ( wrfinput_d03_2015-06-10_12:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_12:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_12:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.23109 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_12:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.23109 rm -f tmp.23109 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_12:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_12:00:00.e010 set files = ( wrfinput_d03_2015-06-10_12:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_12:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_12:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_12:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_12:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_d01_2015-06-10_12:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_12:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfinput_d02_2015-06-10_12:00:00 wrfinput_d02_2015-06-10_12:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_12:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/real/wrfinput_d03_2015-06-10_12:00:00 wrfinput_d03_2015-06-10_12:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e001 wrfbdy_d01_2015-06-10_12:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_12:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e001 wrfinput_d02_2015-06-10_12:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_12:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e001 wrfinput_d03_2015-06-10_12:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e002 wrfbdy_d01_2015-06-10_12:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_12:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e002 wrfinput_d02_2015-06-10_12:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_12:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e002 wrfinput_d03_2015-06-10_12:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e003 wrfbdy_d01_2015-06-10_12:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_12:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e003 wrfinput_d02_2015-06-10_12:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_12:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e003 wrfinput_d03_2015-06-10_12:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e004 wrfbdy_d01_2015-06-10_12:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_12:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e004 wrfinput_d02_2015-06-10_12:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_12:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e004 wrfinput_d03_2015-06-10_12:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e005 wrfbdy_d01_2015-06-10_12:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_12:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e005 wrfinput_d02_2015-06-10_12:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_12:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e005 wrfinput_d03_2015-06-10_12:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e006 wrfbdy_d01_2015-06-10_12:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_12:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e006 wrfinput_d02_2015-06-10_12:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_12:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e006 wrfinput_d03_2015-06-10_12:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e007 wrfbdy_d01_2015-06-10_12:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_12:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e007 wrfinput_d02_2015-06-10_12:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_12:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e007 wrfinput_d03_2015-06-10_12:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e008 wrfbdy_d01_2015-06-10_12:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_12:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e008 wrfinput_d02_2015-06-10_12:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_12:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e008 wrfinput_d03_2015-06-10_12:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_d01_2015-06-10_12:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e009 wrfbdy_d01_2015-06-10_12:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_12:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e009 wrfinput_d02_2015-06-10_12:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_12:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e009 wrfinput_d03_2015-06-10_12:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e010 wrfinput_d01_2015-06-10_12:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e010 wrfbdy_d01_2015-06-10_12:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_12:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d02_2015-06-10_12:00:00.e010 wrfinput_d02_2015-06-10_12:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_12:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_met_ic/wrfinput_d03_2015-06-10_12:00:00.e010 wrfinput_d03_2015-06-10_12:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + LE_DATE=2015061013 + export LE_DATE + [[ 2015061012 -le 2015061013 ]] + echo 2015061012 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061012 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_12:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_12:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_12:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_12:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_12:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_12:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_12:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=23722 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_812.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149143 + WRFCHEMI=wrfchemi_d02_2015-06-10_12:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_12:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_12:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_12:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_12:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_12:00:00 wrfchemi_d02_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_12:00:00 wrffirechemi_d02_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_12:00:00 wrfbiochemi_d02_2015-06-10_12:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_12:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_12:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_12:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=23775 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_29540.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149144 + WRFCHEMI=wrfchemi_d03_2015-06-10_12:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_12:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_12:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_12:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_12:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_12:00:00 wrfchemi_d03_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_12:00:00 wrffirechemi_d03_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_12:00:00 wrfbiochemi_d03_2015-06-10_12:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_12:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_12:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_12:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=23840 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_29455.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149145 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061013 ]] + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061012 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_13:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_13:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_13:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_12:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_13:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_13:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_13:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24077 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_26291.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149146 + WRFCHEMI=wrfchemi_d02_2015-06-10_13:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_13:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_13:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_12:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_12:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_13:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_13:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_13:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24253 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_12679.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149147 + WRFCHEMI=wrfchemi_d03_2015-06-10_13:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_13:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_13:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_12:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_12:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_13:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_13:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_13:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24316 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_21401.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149148 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061013 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_12:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_12:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_12:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 12 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=12 + export L_HH + D_DATE=2015061012 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=12 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=12 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=11 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=12 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061012.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061012.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 12 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=12 + export L_HH + D_DATE=2015061012 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=12 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=12 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=11 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=12 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061012.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061012.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/prepbufr_met_obs/obs_seq_prep_2015061012.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/prepbufr_met_obs/obs_seq_prep_2015061012.out ./obs_seq_MET_2015061012.out + FILE_LIST[1]=obs_seq_MET_2015061012.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/airnow_o3_obs/obs_seq_airnow_o3_2015061012.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/airnow_o3_obs/obs_seq_airnow_o3_2015061012.out ./obs_seq_AIR_O3_2015061012.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061012.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/tolnet_o3_obs/obs_seq_tolnet_o3_2015061012.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/tolnet_o3_obs/obs_seq_tolnet_o3_2015061012.out ./obs_seq_TOL_O3_2015061012.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061012.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061012.out\',\'obs_seq_AIR_O3_2015061012.out\',\'obs_seq_TOL_O3_2015061012.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=41400 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=45000 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 41400, last_obs_days = 151370, last_obs_seconds = 45000, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 5 2 37 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=41400 which is Gregorian day: 2015 Jun 10 11:30:00 Excluding observations after: day=151370, sec=45000 which is Gregorian day: 2015 Jun 10 12:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061012.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061012.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061012.out inserted number 20000 of 47956 inserted number 40000 of 47956 -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 47956 Number of obs really inserted : 47956 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061012.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 47956 Number of obs to be inserted : 952 Number of obs really inserted : 952 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 48908 Actual number of obs in the new seq file : 48908 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=41461 Gregorian day: 2015 Jun 10 11:31:01 Last obs time: day=151370, sec=45000 Gregorian day: 2015 Jun 10 12:30:00 Number of obs processed : 48908 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 6468 obs RADIOSONDE_V_WIND_COMPONENT 6468 obs RADIOSONDE_TEMPERATURE 7516 obs RADIOSONDE_SPECIFIC_HUMIDITY 7323 obs AIRCRAFT_U_WIND_COMPONENT 2 obs AIRCRAFT_V_WIND_COMPONENT 2 obs AIRCRAFT_TEMPERATURE 7 obs MARINE_SFC_U_WIND_COMPONENT 589 obs MARINE_SFC_V_WIND_COMPONENT 589 obs MARINE_SFC_TEMPERATURE 643 obs MARINE_SFC_SPECIFIC_HUMIDITY 183 obs LAND_SFC_U_WIND_COMPONENT 468 obs LAND_SFC_V_WIND_COMPONENT 468 obs LAND_SFC_TEMPERATURE 478 obs LAND_SFC_SPECIFIC_HUMIDITY 456 obs SAT_U_WIND_COMPONENT 7520 obs SAT_V_WIND_COMPONENT 7520 obs RADIOSONDE_SURFACE_ALTIMETER 91 obs MARINE_SFC_ALTIMETER 684 obs LAND_SFC_ALTIMETER 481 obs AIRNOW_O3 952 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 5 2 38 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061012.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_12:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_12:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_12:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_12:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41400, last_obs_days = 151370, last_obs_seconds = 45000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 41400, last_obs_days = 151370, last_obs_seconds = 45000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 41400, last_obs_days = 151370, last_obs_seconds = 45000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 46800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/combine_obs/obs_seq_comb_2015061012.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 43200 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149150 + mv obs_seq.new obs_seq_comb_filtered_2015061012.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061013 + export CYCLE_DATE + [[ 2015061013 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061013 + export DATE + echo 2015061013 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061013 + YY=15 + export YY + cut -c5-6 + echo 2015061013 + MM=06 + export MM + cut -c7-8 + echo 2015061013 + DD=10 + export DD + cut -c9-10 + echo 2015061013 + HH=13 + export HH + DATE_SHORT=15061013 + export DATE_SHORT + FILE_DATE=2015-06-10_13:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 -1 + 2> /dev/null + PAST_DATE=2015061012 + export PAST_DATE + cut -c1-4 + echo 2015061012 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061012 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061012 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061012 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061012 + PAST_HH=12 + export PAST_HH + PAST_FILE_DATE=2015-06-10_12:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +1 + 2> /dev/null + NEXT_DATE=2015061014 + export NEXT_DATE + cut -c1-4 + echo 2015061014 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061014 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061014 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061014 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061014 + NEXT_HH=14 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_14:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=13 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 13 + 0 )) + [[ 13 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=13 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 13 + 0 )) + D_DATE=2015061013 + export D_DATE + echo 2015061013 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 46800 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=46800 + export SEC_GREG + echo 2015061014 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 50400 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=50400 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 -30m + 2> /dev/null + ASIM_MIN_DATE=201506101230 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506101230 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506101230 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506101230 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506101230 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506101230 + ASIM_MIN_HH=12 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +30m + 2> /dev/null + ASIM_MAX_DATE=201506101330 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506101330 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506101330 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506101330 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506101330 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506101330 + ASIM_MAX_HH=13 + export ASIM_MAX_HH + echo 201506101230 201506101230 + echo 201506101230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 45000 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=45000 + export ASIM_MIN_SEC_GREG + echo 201506101330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 48600 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=48600 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061013 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061013 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + END_DATE=2015061014 + export END_DATE + cut -c1-4 + echo 2015061013 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061013 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061013 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061013 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061013 + START_HOUR=13 + export START_HOUR + START_FILE_DATE=2015-06-10_13:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061014 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061014 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061014 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061014 + END_HOUR=14 + export END_HOUR + END_FILE_DATE=2015-06-10_14:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061012/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=13,13,13 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=14,14,14 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_12:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_13:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506101230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 45000 + (( temp[1]=45000+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=45001 + export NL_FIRST_OBS_SECONDS + echo 201506101330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 48600 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=48600 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061013 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=13 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=13 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=50400 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 -30m + 2> /dev/null + ASIM_DATE_MIN=201506101230 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +30m + 2> /dev/null + ASIM_DATE_MAX=201506101330 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506101230 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506101230 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506101230 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506101230 + ASIM_MN_HH=12 + export ASIM_MN_HH + cut -c1-4 + echo 201506101330 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506101330 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506101330 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506101330 + ASIM_MX_HH=13 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + E_DATE=2015061014 + export E_DATE + cut -c1-4 + echo 2015061014 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061014 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061014 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061014 + E_HH=14 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061013 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_END_DATE=2015061014 + export L_END_DATE + cut -c1-4 + echo 2015061013 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061013 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061013 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061013 + L_START_HOUR=13 + export L_START_HOUR + cut -c1-4 + echo 2015061014 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061014 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061014 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061014 + L_END_HOUR=14 + export L_END_HOUR + cut -c1-4 + echo 2015061013 + cut -c1-4 + echo 2015061013 + cut -c1-4 + echo 2015061013 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061013 + cut -c5-6 + echo 2015061013 + cut -c5-6 + echo 2015061013 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061013 + cut -c7-8 + echo 2015061013 + cut -c7-8 + echo 2015061013 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061013 + cut -c9-10 + echo 2015061013 + cut -c9-10 + echo 2015061013 + NL_START_HOUR=13,13,13 + export NL_START_HOUR + cut -c1-4 + echo 2015061014 + cut -c1-4 + echo 2015061014 + cut -c1-4 + echo 2015061014 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061014 + cut -c5-6 + echo 2015061014 + cut -c5-6 + echo 2015061014 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061014 + cut -c7-8 + echo 2015061014 + cut -c7-8 + echo 2015061014 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061014 + cut -c9-10 + echo 2015061014 + cut -c9-10 + echo 2015061014 + NL_END_HOUR=14,14,14 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_13:00:00\',\'2015-06-10_13:00:00\',\'2015-06-10_13:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_14:00:00\',\'2015-06-10_14:00:00\',\'2015-06-10_14:00:00\'' + export NL_END_DATE + P_DATE=2015061013 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + P_END_DATE=2015061014 + export P_END_DATE + [[ 2015061013 -le 2015061014 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_13:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_12:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_13:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26128 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16803.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149151 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26142 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24579.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149152 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26155 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16761.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149153 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26183 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32123.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149154 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26196 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21125.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149155 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26209 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3251.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149156 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26237 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2769.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149157 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26250 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23815.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149158 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26264 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31953.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149159 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26291 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22129.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149160 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26305 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20683.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149161 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26319 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_683.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149162 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26346 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31477.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149163 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26359 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15366.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149164 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26373 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27380.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149165 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26400 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30916.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149166 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26413 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21333.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149167 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26427 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26792.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149168 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26454 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10149.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149169 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26468 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12148.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149170 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26481 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20851.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149171 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26508 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22712.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149172 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26522 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2439.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149173 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26535 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27893.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149174 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26563 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30014.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149175 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26577 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18802.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149176 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26590 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29354.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149177 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26617 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31695.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149178 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26631 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22768.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149179 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_13:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_13:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:30:00', / &wrfvar22 time_window_max = '2015-06-10_13:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_13:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26644 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21763.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149180 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_13:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_13:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_13:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + P_DATE=2015061014 + export P_DATE + [[ 2015061014 -le 2015061014 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_14:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_13:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_14:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16803.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26949 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20950.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149181 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24579.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26963 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3626.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149182 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16761.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26977 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18357.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149183 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32123.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27004 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18615.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149184 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21125.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27018 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_414.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149185 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3251.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27031 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19514.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149186 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2769.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27063 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3111.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149187 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23815.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27077 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26712.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149188 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31953.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27090 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11535.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149189 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22129.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27118 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11820.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149190 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20683.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27131 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5055.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149191 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_683.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27145 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23882.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149192 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31477.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27172 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26660.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149193 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15366.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27186 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23793.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149194 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27380.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27199 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5697.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149195 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30916.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27228 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4194.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149196 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21333.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27243 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2710.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149197 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26792.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27256 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2469.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149198 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10149.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27284 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_89.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149199 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12148.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27297 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7361.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149200 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20851.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27311 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18201.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149201 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22712.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27339 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18907.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149202 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2439.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27352 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20038.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149203 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27893.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27366 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21682.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149204 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30014.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27393 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7950.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149205 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18802.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27407 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24117.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149206 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29354.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27420 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22585.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149207 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31695.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -f hhddmmyycc + NL_SEED_ARRAY1=1310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061013 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + [[ 13 -ge 00 ]] + [[ 13 -lt 06 ]] + [[ 13 -ge 06 ]] + [[ 13 -lt 12 ]] + [[ 13 -ge 12 ]] + [[ 13 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27448 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25336.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149208 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22768.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27461 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12699.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149209 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21763.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 13,13,13, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 14,14,14, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27475 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20172.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149210 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + P_DATE=2015061015 + export P_DATE + [[ 2015061015 -le 2015061014 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 13, 0, 0, last_bin_center = 2015, 6, 10, 13, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061013 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_END_DATE=2015061014 + export L_END_DATE + TRANDOM=23949 + [[ 2015061013 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + NEXT_L_DATE=2015061014 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_14:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27939 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13198.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149211 + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_13:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 13, 0, 0, last_bin_center = 2015, 6, 10, 13, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061013 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_END_DATE=2015061014 + export L_END_DATE + TRANDOM=23949 + [[ 2015061013 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + NEXT_L_DATE=2015061014 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_14:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28152 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21181.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149213 + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_13:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 13, 0, 0, last_bin_center = 2015, 6, 10, 13, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061013 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_END_DATE=2015061014 + export L_END_DATE + TRANDOM=23949 + [[ 2015061013 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + NEXT_L_DATE=2015061014 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_14:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28364 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27535.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149214 + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_13:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 13, 0, 0, last_bin_center = 2015, 6, 10, 13, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061013 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_END_DATE=2015061014 + export L_END_DATE + TRANDOM=23949 + [[ 2015061013 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + NEXT_L_DATE=2015061014 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_14:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28576 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21386.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149215 + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_13:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 13, 0, 0, last_bin_center = 2015, 6, 10, 13, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061013 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_END_DATE=2015061014 + export L_END_DATE + TRANDOM=23949 + [[ 2015061013 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + NEXT_L_DATE=2015061014 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_14:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28791 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_26050.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149216 + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_13:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 13, 0, 0, last_bin_center = 2015, 6, 10, 13, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061013 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_END_DATE=2015061014 + export L_END_DATE + TRANDOM=23949 + [[ 2015061013 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + NEXT_L_DATE=2015061014 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_14:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29002 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19390.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149217 + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_13:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 13, 0, 0, last_bin_center = 2015, 6, 10, 13, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061013 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_END_DATE=2015061014 + export L_END_DATE + TRANDOM=23949 + [[ 2015061013 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + NEXT_L_DATE=2015061014 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_14:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29214 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30530.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149219 + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_13:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 13, 0, 0, last_bin_center = 2015, 6, 10, 13, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061013 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_END_DATE=2015061014 + export L_END_DATE + TRANDOM=23949 + [[ 2015061013 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + NEXT_L_DATE=2015061014 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_14:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29426 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16366.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149220 + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_13:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 13, 0, 0, last_bin_center = 2015, 6, 10, 13, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061013 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_END_DATE=2015061014 + export L_END_DATE + TRANDOM=23949 + [[ 2015061013 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + NEXT_L_DATE=2015061014 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_14:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29762 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_210.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149221 + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_13:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 13, 0, 0, last_bin_center = 2015, 6, 10, 13, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45001, last_obs_days = 151370, last_obs_seconds = 48600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061013 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_END_DATE=2015061014 + export L_END_DATE + TRANDOM=23949 + [[ 2015061013 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + NEXT_L_DATE=2015061014 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_14:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29974 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8251.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149222 + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -lt 2015061014 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_13:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_13:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfinput_d02_2015-06-10_13:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfinput_d03_2015-06-10_13:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfinput_d02_2015-06-10_13:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfinput_d03_2015-06-10_13:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi + L_DATE=2015061013 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + LE_DATE=2015061014 + export LE_DATE + [[ 2015061013 -le 2015061014 ]] + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_13:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_13:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_13:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_13:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_13:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061014 ]] + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_14:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_14:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_14:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_14:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_14:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061014 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061013 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149253 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=13 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_13:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_13:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfinput_d01_2015-06-10_13:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 ./. + mv wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e000 + mv wrfbdy_d01_2015-06-10_13:00:00 wrfbdy_d01_2015-06-10_13:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30114 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_13:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.30114 rm -f tmp.30114 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_13:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_13:00:00.e000 set files = ( wrfinput_d01_2015-06-10_13:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_13:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30182 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_13:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.30182 rm -f tmp.30182 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_13:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_13:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_13:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_13:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.30182 rm -f tmp.30182 if ( wrfinput_d01_2015-06-10_13:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_13:00:00.e000 echo wrfinput_d01_2015-06-10_13:00:00.e000 wrfinput_d01_2015-06-10_13:00:00.e000 ln -s wrfinput_d01_2015-06-10_13:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_13:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_13:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_13:00:00.e000 wrfinput_d01_2015-06-10_13:00:00 + mv wrfbdy_d01_2015-06-10_13:00:00.e000 wrfbdy_d01_2015-06-10_13:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=13 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_13:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_13:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30267 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_13:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.30267 rm -f tmp.30267 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_13:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_13:00:00.e001 set files = ( wrfinput_d01_2015-06-10_13:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30335 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_13:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.30335 rm -f tmp.30335 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_13:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_13:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_13:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.30335 rm -f tmp.30335 if ( wrfinput_d01_2015-06-10_13:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 echo wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 ln -s wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_13:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_13:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_13:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_13:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30418 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_13:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.30418 rm -f tmp.30418 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_13:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_13:00:00.e002 set files = ( wrfinput_d01_2015-06-10_13:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30485 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_13:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.30485 rm -f tmp.30485 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_13:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_13:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_13:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.30485 rm -f tmp.30485 if ( wrfinput_d01_2015-06-10_13:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 echo wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 ln -s wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_13:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_13:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_13:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_13:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30567 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_13:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.30567 rm -f tmp.30567 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_13:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_13:00:00.e003 set files = ( wrfinput_d01_2015-06-10_13:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30635 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_13:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.30635 rm -f tmp.30635 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_13:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_13:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_13:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.30635 rm -f tmp.30635 if ( wrfinput_d01_2015-06-10_13:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 echo wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 ln -s wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_13:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_13:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_13:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_13:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30717 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_13:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.30717 rm -f tmp.30717 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_13:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_13:00:00.e004 set files = ( wrfinput_d01_2015-06-10_13:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30785 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_13:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.30785 rm -f tmp.30785 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_13:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_13:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_13:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.30785 rm -f tmp.30785 if ( wrfinput_d01_2015-06-10_13:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 echo wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 ln -s wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_13:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_13:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_13:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_13:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30869 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_13:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.30869 rm -f tmp.30869 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_13:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_13:00:00.e005 set files = ( wrfinput_d01_2015-06-10_13:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30937 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_13:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.30937 rm -f tmp.30937 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_13:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_13:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_13:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.30937 rm -f tmp.30937 if ( wrfinput_d01_2015-06-10_13:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 echo wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 ln -s wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_13:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_13:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_13:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_13:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31019 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_13:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.31019 rm -f tmp.31019 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_13:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_13:00:00.e006 set files = ( wrfinput_d01_2015-06-10_13:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31087 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_13:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.31087 rm -f tmp.31087 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_13:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_13:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_13:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.31087 rm -f tmp.31087 if ( wrfinput_d01_2015-06-10_13:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 echo wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 ln -s wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_13:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_13:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_13:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_13:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31169 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_13:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.31169 rm -f tmp.31169 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_13:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_13:00:00.e007 set files = ( wrfinput_d01_2015-06-10_13:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31237 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_13:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.31237 rm -f tmp.31237 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_13:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_13:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_13:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.31237 rm -f tmp.31237 if ( wrfinput_d01_2015-06-10_13:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 echo wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 ln -s wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_13:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_13:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_13:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_13:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31323 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_13:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.31323 rm -f tmp.31323 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_13:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_13:00:00.e008 set files = ( wrfinput_d01_2015-06-10_13:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_13:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31390 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_13:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.31390 rm -f tmp.31390 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_13:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_13:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_13:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01_2015-06-10_13:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.31390 rm -f tmp.31390 if ( wrfinput_d01_2015-06-10_13:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01_2015-06-10_13:00:00.e008 echo wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01_2015-06-10_13:00:00.e008 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01_2015-06-10_13:00:00.e008 ln -s wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_13:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_13:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_13:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_13:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31472 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_13:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.31472 rm -f tmp.31472 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_13:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_13:00:00.e009 set files = ( wrfinput_d01_2015-06-10_13:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_13:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31540 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_13:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.31540 rm -f tmp.31540 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_13:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_13:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_13:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01_2015-06-10_13:00:00.e008 wrfinput_d01_2015-06-10_13:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.31540 rm -f tmp.31540 if ( wrfinput_d01_2015-06-10_13:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01_2015-06-10_13:00:00.e008 wrfinput_d01_2015-06-10_13:00:00.e009 echo wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01_2015-06-10_13:00:00.e008 wrfinput_d01_2015-06-10_13:00:00.e009 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01_2015-06-10_13:00:00.e008 wrfinput_d01_2015-06-10_13:00:00.e009 ln -s wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_13:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_13:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_13:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_13:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31622 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_13:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.31622 rm -f tmp.31622 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_13:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_13:00:00.e010 set files = ( wrfinput_d01_2015-06-10_13:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_13:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_13:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_13:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_13:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.31690 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_13:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.31690 rm -f tmp.31690 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_13:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_13:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_13:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01_2015-06-10_13:00:00.e008 wrfinput_d01_2015-06-10_13:00:00.e009 wrfinput_d01_2015-06-10_13:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.31690 rm -f tmp.31690 if ( wrfinput_d01_2015-06-10_13:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01_2015-06-10_13:00:00.e008 wrfinput_d01_2015-06-10_13:00:00.e009 wrfinput_d01_2015-06-10_13:00:00.e010 echo wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01_2015-06-10_13:00:00.e008 wrfinput_d01_2015-06-10_13:00:00.e009 wrfinput_d01_2015-06-10_13:00:00.e010 wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01_2015-06-10_13:00:00.e008 wrfinput_d01_2015-06-10_13:00:00.e009 wrfinput_d01_2015-06-10_13:00:00.e010 ln -s wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_13:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_13:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_13:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_13:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_13:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149267 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=13 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_13:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfinput_d02_2015-06-10_13:00:00 ./. + mv wrfinput_d02_2015-06-10_13:00:00 wrfinput_d02_2015-06-10_13:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.31810 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_13:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.31810 rm -f tmp.31810 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_13:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_13:00:00.e000 set files = ( wrfinput_d02_2015-06-10_13:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_13:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_13:00:00.e000 wrfinput_d02_2015-06-10_13:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=13 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_13:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.31885 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_13:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.31885 rm -f tmp.31885 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_13:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_13:00:00.e001 set files = ( wrfinput_d02_2015-06-10_13:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_13:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_13:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.31958 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_13:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.31958 rm -f tmp.31958 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_13:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_13:00:00.e002 set files = ( wrfinput_d02_2015-06-10_13:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_13:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_13:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.32030 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_13:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.32030 rm -f tmp.32030 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_13:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_13:00:00.e003 set files = ( wrfinput_d02_2015-06-10_13:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_13:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_13:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.32103 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_13:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.32103 rm -f tmp.32103 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_13:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_13:00:00.e004 set files = ( wrfinput_d02_2015-06-10_13:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_13:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_13:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.32175 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_13:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.32175 rm -f tmp.32175 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_13:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_13:00:00.e005 set files = ( wrfinput_d02_2015-06-10_13:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_13:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_13:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.32246 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_13:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.32246 rm -f tmp.32246 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_13:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_13:00:00.e006 set files = ( wrfinput_d02_2015-06-10_13:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_13:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_13:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.32319 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_13:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.32319 rm -f tmp.32319 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_13:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_13:00:00.e007 set files = ( wrfinput_d02_2015-06-10_13:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_13:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_13:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.32391 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_13:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.32391 rm -f tmp.32391 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_13:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_13:00:00.e008 set files = ( wrfinput_d02_2015-06-10_13:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_13:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_13:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.32463 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_13:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.32463 rm -f tmp.32463 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_13:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_13:00:00.e009 set files = ( wrfinput_d02_2015-06-10_13:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_13:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_13:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.32535 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_13:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.32535 rm -f tmp.32535 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_13:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_13:00:00.e010 set files = ( wrfinput_d02_2015-06-10_13:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_13:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_13:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_13:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_13:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149285 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=13 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_13:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfinput_d03_2015-06-10_13:00:00 ./. + mv wrfinput_d03_2015-06-10_13:00:00 wrfinput_d03_2015-06-10_13:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.304 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_13:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.304 rm -f tmp.304 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_13:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_13:00:00.e000 set files = ( wrfinput_d03_2015-06-10_13:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_13:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_13:00:00.e000 wrfinput_d03_2015-06-10_13:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=13 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_13:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.383 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_13:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.383 rm -f tmp.383 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_13:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_13:00:00.e001 set files = ( wrfinput_d03_2015-06-10_13:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_13:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_13:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.456 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_13:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.456 rm -f tmp.456 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_13:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_13:00:00.e002 set files = ( wrfinput_d03_2015-06-10_13:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_13:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_13:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.528 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_13:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.528 rm -f tmp.528 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_13:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_13:00:00.e003 set files = ( wrfinput_d03_2015-06-10_13:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_13:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_13:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.600 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_13:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.600 rm -f tmp.600 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_13:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_13:00:00.e004 set files = ( wrfinput_d03_2015-06-10_13:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_13:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_13:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.674 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_13:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.674 rm -f tmp.674 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_13:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_13:00:00.e005 set files = ( wrfinput_d03_2015-06-10_13:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_13:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_13:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.747 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_13:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.747 rm -f tmp.747 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_13:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_13:00:00.e006 set files = ( wrfinput_d03_2015-06-10_13:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_13:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_13:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.825 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_13:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.825 rm -f tmp.825 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_13:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_13:00:00.e007 set files = ( wrfinput_d03_2015-06-10_13:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_13:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_13:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.899 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_13:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.899 rm -f tmp.899 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_13:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_13:00:00.e008 set files = ( wrfinput_d03_2015-06-10_13:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_13:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_13:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.971 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_13:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.971 rm -f tmp.971 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_13:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_13:00:00.e009 set files = ( wrfinput_d03_2015-06-10_13:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_13:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_13:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.1043 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_13:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.1043 rm -f tmp.1043 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_13:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_13:00:00.e010 set files = ( wrfinput_d03_2015-06-10_13:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_13:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_13:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_13:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_13:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_13:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_13:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01_2015-06-10_13:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfbdy_d01_2015-06-10_13:00:00 wrfbdy_d01_2015-06-10_13:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_13:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfinput_d02_2015-06-10_13:00:00 wrfinput_d02_2015-06-10_13:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_13:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/real/wrfinput_d03_2015-06-10_13:00:00 wrfinput_d03_2015-06-10_13:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_13:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_13:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01_2015-06-10_13:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e001 wrfbdy_d01_2015-06-10_13:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_13:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e001 wrfinput_d02_2015-06-10_13:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_13:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e001 wrfinput_d03_2015-06-10_13:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_13:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_13:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e002 wrfinput_d01_2015-06-10_13:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e002 wrfbdy_d01_2015-06-10_13:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_13:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e002 wrfinput_d02_2015-06-10_13:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_13:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e002 wrfinput_d03_2015-06-10_13:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_13:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_13:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e003 wrfinput_d01_2015-06-10_13:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e003 wrfbdy_d01_2015-06-10_13:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_13:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e003 wrfinput_d02_2015-06-10_13:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_13:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e003 wrfinput_d03_2015-06-10_13:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_13:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_13:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e004 wrfinput_d01_2015-06-10_13:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e004 wrfbdy_d01_2015-06-10_13:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_13:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e004 wrfinput_d02_2015-06-10_13:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_13:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e004 wrfinput_d03_2015-06-10_13:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_13:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_13:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e005 wrfinput_d01_2015-06-10_13:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e005 wrfbdy_d01_2015-06-10_13:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_13:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e005 wrfinput_d02_2015-06-10_13:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_13:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e005 wrfinput_d03_2015-06-10_13:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_13:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_13:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e006 wrfinput_d01_2015-06-10_13:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e006 wrfbdy_d01_2015-06-10_13:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_13:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e006 wrfinput_d02_2015-06-10_13:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_13:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e006 wrfinput_d03_2015-06-10_13:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_13:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_13:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e007 wrfinput_d01_2015-06-10_13:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e007 wrfbdy_d01_2015-06-10_13:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_13:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e007 wrfinput_d02_2015-06-10_13:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_13:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e007 wrfinput_d03_2015-06-10_13:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_13:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_13:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e008 wrfinput_d01_2015-06-10_13:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e008 wrfbdy_d01_2015-06-10_13:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_13:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e008 wrfinput_d02_2015-06-10_13:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_13:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e008 wrfinput_d03_2015-06-10_13:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_13:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_13:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e009 wrfinput_d01_2015-06-10_13:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e009 wrfbdy_d01_2015-06-10_13:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_13:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e009 wrfinput_d02_2015-06-10_13:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_13:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e009 wrfinput_d03_2015-06-10_13:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_13:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_13:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d01_2015-06-10_13:00:00.e010 wrfinput_d01_2015-06-10_13:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_bc/wrfbdy_d01_2015-06-10_13:00:00.e010 wrfbdy_d01_2015-06-10_13:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_13:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d02_2015-06-10_13:00:00.e010 wrfinput_d02_2015-06-10_13:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_13:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_met_ic/wrfinput_d03_2015-06-10_13:00:00.e010 wrfinput_d03_2015-06-10_13:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061013 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + LE_DATE=2015061014 + export LE_DATE + [[ 2015061013 -le 2015061014 ]] + echo 2015061013 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061013 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_13:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_13:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_13:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_13:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_13:00:00 wrfbiochemi_d01_2015-06-10_13:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_13:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_13:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_13:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1584 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_3397.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149297 + WRFCHEMI=wrfchemi_d02_2015-06-10_13:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_13:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_13:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_13:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_13:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_13:00:00 wrfchemi_d02_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_13:00:00 wrffirechemi_d02_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_13:00:00 wrfbiochemi_d02_2015-06-10_13:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_13:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_13:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_13:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1701 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_1102.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149298 + WRFCHEMI=wrfchemi_d03_2015-06-10_13:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_13:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_13:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_13:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_13:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_13:00:00 wrfchemi_d03_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_13:00:00 wrffirechemi_d03_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_13:00:00 wrfbiochemi_d03_2015-06-10_13:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_13:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_13:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_13:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1764 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_10048.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149299 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061014 ]] + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061013 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_14:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_14:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_14:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_13:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_13:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_14:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_14:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_14:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1994 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_20302.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149300 + WRFCHEMI=wrfchemi_d02_2015-06-10_14:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_14:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_14:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_13:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_13:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_14:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_14:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_14:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2047 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_23070.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149301 + WRFCHEMI=wrfchemi_d03_2015-06-10_14:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_14:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_14:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_13:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_13:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_14:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_14:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_14:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2111 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_4460.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149302 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061014 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_13:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_13:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_13:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 13 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=13 + export L_HH + D_DATE=2015061013 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=13 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=13 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=12 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=13 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061013.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061013.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 13 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=13 + export L_HH + D_DATE=2015061013 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=13 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=13 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=12 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=13 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061013.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061013.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/prepbufr_met_obs/obs_seq_prep_2015061013.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/prepbufr_met_obs/obs_seq_prep_2015061013.out ./obs_seq_MET_2015061013.out + FILE_LIST[1]=obs_seq_MET_2015061013.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/airnow_o3_obs/obs_seq_airnow_o3_2015061013.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/airnow_o3_obs/obs_seq_airnow_o3_2015061013.out ./obs_seq_AIR_O3_2015061013.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061013.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/tolnet_o3_obs/obs_seq_tolnet_o3_2015061013.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/tolnet_o3_obs/obs_seq_tolnet_o3_2015061013.out ./obs_seq_TOL_O3_2015061013.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061013.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061013.out\',\'obs_seq_AIR_O3_2015061013.out\',\'obs_seq_TOL_O3_2015061013.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=45000 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=48600 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 45000, last_obs_days = 151370, last_obs_seconds = 48600, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 5 23 50 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=45000 which is Gregorian day: 2015 Jun 10 12:30:00 Excluding observations after: day=151370, sec=48600 which is Gregorian day: 2015 Jun 10 13:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061013.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061013.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061013.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 18136 Number of obs really inserted : 18136 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061013.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 18136 Number of obs to be inserted : 937 Number of obs really inserted : 937 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 19073 Actual number of obs in the new seq file : 19073 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=45061 Gregorian day: 2015 Jun 10 12:31:01 Last obs time: day=151370, sec=48600 Gregorian day: 2015 Jun 10 13:30:00 Number of obs processed : 19073 --------------------------------------------------------- AIRCRAFT_U_WIND_COMPONENT 4 obs AIRCRAFT_V_WIND_COMPONENT 4 obs AIRCRAFT_TEMPERATURE 14 obs MARINE_SFC_U_WIND_COMPONENT 563 obs MARINE_SFC_V_WIND_COMPONENT 563 obs MARINE_SFC_TEMPERATURE 614 obs MARINE_SFC_SPECIFIC_HUMIDITY 150 obs LAND_SFC_U_WIND_COMPONENT 25 obs LAND_SFC_V_WIND_COMPONENT 25 obs LAND_SFC_TEMPERATURE 25 obs LAND_SFC_SPECIFIC_HUMIDITY 24 obs SAT_U_WIND_COMPONENT 7723 obs SAT_V_WIND_COMPONENT 7723 obs MARINE_SFC_ALTIMETER 654 obs LAND_SFC_ALTIMETER 25 obs AIRNOW_O3 937 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 5 23 50 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061013.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_13:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_13:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_13:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_13:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_13:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_13:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45000, last_obs_days = 151370, last_obs_seconds = 48600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 13, 0, 0, last_bin_center = 2015, 6, 10, 13, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 45000, last_obs_days = 151370, last_obs_seconds = 48600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 45000, last_obs_days = 151370, last_obs_seconds = 48600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 50400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/combine_obs/obs_seq_comb_2015061013.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 46800 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149307 + mv obs_seq.new obs_seq_comb_filtered_2015061013.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061014 + export CYCLE_DATE + [[ 2015061014 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061014 + export DATE + echo 2015061014 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061014 + YY=15 + export YY + cut -c5-6 + echo 2015061014 + MM=06 + export MM + cut -c7-8 + echo 2015061014 + DD=10 + export DD + cut -c9-10 + echo 2015061014 + HH=14 + export HH + DATE_SHORT=15061014 + export DATE_SHORT + FILE_DATE=2015-06-10_14:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 -1 + 2> /dev/null + PAST_DATE=2015061013 + export PAST_DATE + cut -c1-4 + echo 2015061013 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061013 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061013 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061013 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061013 + PAST_HH=13 + export PAST_HH + PAST_FILE_DATE=2015-06-10_13:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +1 + 2> /dev/null + NEXT_DATE=2015061015 + export NEXT_DATE + cut -c1-4 + echo 2015061015 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061015 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061015 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061015 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061015 + NEXT_HH=15 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_15:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=14 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 14 + 0 )) + [[ 14 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=14 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 14 + 0 )) + D_DATE=2015061014 + export D_DATE + echo 2015061014 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 50400 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=50400 + export SEC_GREG + echo 2015061015 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 54000 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=54000 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 -30m + 2> /dev/null + ASIM_MIN_DATE=201506101330 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506101330 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506101330 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506101330 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506101330 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506101330 + ASIM_MIN_HH=13 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +30m + 2> /dev/null + ASIM_MAX_DATE=201506101430 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506101430 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506101430 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506101430 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506101430 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506101430 + ASIM_MAX_HH=14 + export ASIM_MAX_HH + echo 201506101330 201506101330 + echo 201506101330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 48600 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=48600 + export ASIM_MIN_SEC_GREG + echo 201506101430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 52200 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=52200 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061014 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061014 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + END_DATE=2015061015 + export END_DATE + cut -c1-4 + echo 2015061014 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061014 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061014 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061014 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061014 + START_HOUR=14 + export START_HOUR + START_FILE_DATE=2015-06-10_14:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061015 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061015 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061015 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061015 + END_HOUR=15 + export END_HOUR + END_FILE_DATE=2015-06-10_15:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061013/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=14,14,14 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=15,15,15 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_13:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_14:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506101330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 48600 + (( temp[1]=48600+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=48601 + export NL_FIRST_OBS_SECONDS + echo 201506101430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 52200 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=52200 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061014 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=14 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=14 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=54000 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 -30m + 2> /dev/null + ASIM_DATE_MIN=201506101330 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +30m + 2> /dev/null + ASIM_DATE_MAX=201506101430 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506101330 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506101330 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506101330 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506101330 + ASIM_MN_HH=13 + export ASIM_MN_HH + cut -c1-4 + echo 201506101430 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506101430 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506101430 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506101430 + ASIM_MX_HH=14 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + E_DATE=2015061015 + export E_DATE + cut -c1-4 + echo 2015061015 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061015 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061015 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061015 + E_HH=15 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061014 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_END_DATE=2015061015 + export L_END_DATE + cut -c1-4 + echo 2015061014 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061014 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061014 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061014 + L_START_HOUR=14 + export L_START_HOUR + cut -c1-4 + echo 2015061015 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061015 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061015 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061015 + L_END_HOUR=15 + export L_END_HOUR + cut -c1-4 + echo 2015061014 + cut -c1-4 + echo 2015061014 + cut -c1-4 + echo 2015061014 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061014 + cut -c5-6 + echo 2015061014 + cut -c5-6 + echo 2015061014 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061014 + cut -c7-8 + echo 2015061014 + cut -c7-8 + echo 2015061014 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061014 + cut -c9-10 + echo 2015061014 + cut -c9-10 + echo 2015061014 + NL_START_HOUR=14,14,14 + export NL_START_HOUR + cut -c1-4 + echo 2015061015 + cut -c1-4 + echo 2015061015 + cut -c1-4 + echo 2015061015 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061015 + cut -c5-6 + echo 2015061015 + cut -c5-6 + echo 2015061015 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061015 + cut -c7-8 + echo 2015061015 + cut -c7-8 + echo 2015061015 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061015 + cut -c9-10 + echo 2015061015 + cut -c9-10 + echo 2015061015 + NL_END_HOUR=15,15,15 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_14:00:00\',\'2015-06-10_14:00:00\',\'2015-06-10_14:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_15:00:00\',\'2015-06-10_15:00:00\',\'2015-06-10_15:00:00\'' + export NL_END_DATE + P_DATE=2015061014 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + P_END_DATE=2015061015 + export P_END_DATE + [[ 2015061014 -le 2015061015 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_14:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_13:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_14:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4151 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27036.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149308 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4165 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18338.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149309 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4178 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9170.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149310 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4206 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1324.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149311 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4219 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28118.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149312 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4235 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7645.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149313 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4263 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26601.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149314 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4276 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18191.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149315 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4290 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3408.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149316 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4317 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23259.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149317 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4330 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15329.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149318 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4344 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10888.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149319 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4371 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25376.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149320 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4384 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24551.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149321 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4398 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2973.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149322 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4425 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6042.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149323 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4438 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5067.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149324 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4452 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13040.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149325 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4479 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12689.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149326 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4492 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12692.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149327 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4506 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3789.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149328 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4533 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26662.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149329 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4547 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23910.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149330 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4560 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7746.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149331 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4587 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9042.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149332 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4601 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4320.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149333 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4614 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13447.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149334 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4641 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19503.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149335 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4655 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9027.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149336 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_14:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_14:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_13:30:00', / &wrfvar22 time_window_max = '2015-06-10_14:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_14:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4668 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13781.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149337 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_14:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_14:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_14:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + P_DATE=2015061015 + export P_DATE + [[ 2015061015 -le 2015061015 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_15:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_14:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_15:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27036.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4809 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15914.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149338 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18338.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4823 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10403.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149339 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9170.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4838 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14066.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149340 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1324.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4927 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30970.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149341 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28118.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4977 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22584.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149342 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7645.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5017 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25717.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149343 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26601.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5045 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9725.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149344 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18191.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5059 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22752.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149345 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3408.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5072 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21585.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149346 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23259.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5100 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7764.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149347 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15329.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5113 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12820.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149348 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10888.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5127 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22986.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149349 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25376.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5154 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21335.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149350 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24551.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5168 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11894.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149351 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2973.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5181 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14838.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149352 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6042.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5209 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24703.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149353 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5067.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5223 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31703.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149354 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13040.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5236 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17621.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149355 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12689.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5264 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27012.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149356 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12692.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5277 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4842.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149357 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3789.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5291 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3542.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149358 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26662.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5318 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25512.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149359 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23910.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5332 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21556.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149360 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7746.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5346 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27100.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149361 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9042.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5373 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20976.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149362 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4320.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5387 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32727.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149363 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13447.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5400 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28580.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149364 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19503.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -f hhddmmyycc + NL_SEED_ARRAY1=1410061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061014 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + [[ 14 -ge 00 ]] + [[ 14 -lt 06 ]] + [[ 14 -ge 06 ]] + [[ 14 -lt 12 ]] + [[ 14 -ge 12 ]] + [[ 14 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5428 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21988.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149365 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9027.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5441 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2245.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149366 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13781.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 14,14,14, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 15,15,15, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5455 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26417.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149367 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + P_DATE=2015061016 + export P_DATE + [[ 2015061016 -le 2015061015 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 14, 0, 0, last_bin_center = 2015, 6, 10, 14, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061014 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_END_DATE=2015061015 + export L_END_DATE + TRANDOM=23949 + [[ 2015061014 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5755 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28526.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149369 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_14:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 14, 0, 0, last_bin_center = 2015, 6, 10, 14, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061014 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_END_DATE=2015061015 + export L_END_DATE + TRANDOM=23949 + [[ 2015061014 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5967 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_24365.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149370 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_14:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 14, 0, 0, last_bin_center = 2015, 6, 10, 14, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061014 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_END_DATE=2015061015 + export L_END_DATE + TRANDOM=23949 + [[ 2015061014 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6179 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16527.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149371 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_14:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 14, 0, 0, last_bin_center = 2015, 6, 10, 14, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061014 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_END_DATE=2015061015 + export L_END_DATE + TRANDOM=23949 + [[ 2015061014 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6390 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28235.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149372 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_14:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 14, 0, 0, last_bin_center = 2015, 6, 10, 14, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061014 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_END_DATE=2015061015 + export L_END_DATE + TRANDOM=23949 + [[ 2015061014 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6606 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19699.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149373 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_14:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 14, 0, 0, last_bin_center = 2015, 6, 10, 14, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061014 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_END_DATE=2015061015 + export L_END_DATE + TRANDOM=23949 + [[ 2015061014 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6818 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_721.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149374 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_14:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 14, 0, 0, last_bin_center = 2015, 6, 10, 14, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061014 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_END_DATE=2015061015 + export L_END_DATE + TRANDOM=23949 + [[ 2015061014 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7029 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12494.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149375 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_14:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 14, 0, 0, last_bin_center = 2015, 6, 10, 14, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061014 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_END_DATE=2015061015 + export L_END_DATE + TRANDOM=23949 + [[ 2015061014 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7241 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21963.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149376 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_14:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 14, 0, 0, last_bin_center = 2015, 6, 10, 14, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061014 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_END_DATE=2015061015 + export L_END_DATE + TRANDOM=23949 + [[ 2015061014 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7580 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32548.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149377 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_14:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 14, 0, 0, last_bin_center = 2015, 6, 10, 14, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061013.out','obs_seq_AIR_O3_2015061013.out','obs_seq_TOL_O3_2015061013.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48601, last_obs_days = 151370, last_obs_seconds = 52200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061014 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_END_DATE=2015061015 + export L_END_DATE + TRANDOM=23949 + [[ 2015061014 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7792 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_14273.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149378 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061015 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_14:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_14:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfinput_d02_2015-06-10_14:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfinput_d03_2015-06-10_14:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfinput_d02_2015-06-10_14:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfinput_d03_2015-06-10_14:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi + L_DATE=2015061014 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + LE_DATE=2015061015 + export LE_DATE + [[ 2015061014 -le 2015061015 ]] + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_14:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_14:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_14:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_14:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_14:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061015 ]] + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_15:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_15:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_15:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_15:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061015 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061014 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149379 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=14 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_14:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_14:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfinput_d01_2015-06-10_14:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 ./. + mv wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e000 + mv wrfbdy_d01_2015-06-10_14:00:00 wrfbdy_d01_2015-06-10_14:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7929 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_14:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.7929 rm -f tmp.7929 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_14:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_14:00:00.e000 set files = ( wrfinput_d01_2015-06-10_14:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_14:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7999 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_14:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.7999 rm -f tmp.7999 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_14:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_14:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_14:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_14:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.7999 rm -f tmp.7999 if ( wrfinput_d01_2015-06-10_14:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_14:00:00.e000 echo wrfinput_d01_2015-06-10_14:00:00.e000 wrfinput_d01_2015-06-10_14:00:00.e000 ln -s wrfinput_d01_2015-06-10_14:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_14:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_14:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_14:00:00.e000 wrfinput_d01_2015-06-10_14:00:00 + mv wrfbdy_d01_2015-06-10_14:00:00.e000 wrfbdy_d01_2015-06-10_14:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=14 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_14:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_14:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8084 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_14:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8084 rm -f tmp.8084 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_14:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_14:00:00.e001 set files = ( wrfinput_d01_2015-06-10_14:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8151 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_14:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8151 rm -f tmp.8151 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_14:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_14:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_14:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8151 rm -f tmp.8151 if ( wrfinput_d01_2015-06-10_14:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 echo wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 ln -s wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_14:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_14:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_14:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_14:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8233 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_14:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8233 rm -f tmp.8233 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_14:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_14:00:00.e002 set files = ( wrfinput_d01_2015-06-10_14:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8301 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_14:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8301 rm -f tmp.8301 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_14:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_14:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_14:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8301 rm -f tmp.8301 if ( wrfinput_d01_2015-06-10_14:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 echo wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 ln -s wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_14:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_14:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_14:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_14:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8383 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_14:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8383 rm -f tmp.8383 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_14:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_14:00:00.e003 set files = ( wrfinput_d01_2015-06-10_14:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8451 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_14:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8451 rm -f tmp.8451 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_14:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_14:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_14:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8451 rm -f tmp.8451 if ( wrfinput_d01_2015-06-10_14:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 echo wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 ln -s wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_14:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_14:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_14:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_14:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8533 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_14:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.8533 rm -f tmp.8533 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_14:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_14:00:00.e004 set files = ( wrfinput_d01_2015-06-10_14:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8601 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_14:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.8601 rm -f tmp.8601 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_14:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_14:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_14:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.8601 rm -f tmp.8601 if ( wrfinput_d01_2015-06-10_14:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 echo wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 ln -s wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_14:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_14:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_14:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_14:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8683 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_14:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.8683 rm -f tmp.8683 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_14:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_14:00:00.e005 set files = ( wrfinput_d01_2015-06-10_14:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8750 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_14:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.8750 rm -f tmp.8750 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_14:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_14:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_14:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.8750 rm -f tmp.8750 if ( wrfinput_d01_2015-06-10_14:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 echo wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 ln -s wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_14:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_14:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_14:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_14:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8832 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_14:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.8832 rm -f tmp.8832 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_14:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_14:00:00.e006 set files = ( wrfinput_d01_2015-06-10_14:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8900 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_14:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.8900 rm -f tmp.8900 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_14:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_14:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_14:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.8900 rm -f tmp.8900 if ( wrfinput_d01_2015-06-10_14:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 echo wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 ln -s wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_14:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_14:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_14:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_14:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8982 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_14:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.8982 rm -f tmp.8982 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_14:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_14:00:00.e007 set files = ( wrfinput_d01_2015-06-10_14:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9049 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_14:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.9049 rm -f tmp.9049 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_14:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_14:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_14:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.9049 rm -f tmp.9049 if ( wrfinput_d01_2015-06-10_14:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 echo wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 ln -s wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_14:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_14:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_14:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_14:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9131 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_14:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9131 rm -f tmp.9131 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_14:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_14:00:00.e008 set files = ( wrfinput_d01_2015-06-10_14:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_14:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9199 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_14:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9199 rm -f tmp.9199 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_14:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_14:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_14:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01_2015-06-10_14:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9199 rm -f tmp.9199 if ( wrfinput_d01_2015-06-10_14:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01_2015-06-10_14:00:00.e008 echo wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01_2015-06-10_14:00:00.e008 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01_2015-06-10_14:00:00.e008 ln -s wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_14:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_14:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_14:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_14:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9281 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_14:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9281 rm -f tmp.9281 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_14:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_14:00:00.e009 set files = ( wrfinput_d01_2015-06-10_14:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_14:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9348 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_14:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9348 rm -f tmp.9348 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_14:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_14:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_14:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01_2015-06-10_14:00:00.e008 wrfinput_d01_2015-06-10_14:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9348 rm -f tmp.9348 if ( wrfinput_d01_2015-06-10_14:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01_2015-06-10_14:00:00.e008 wrfinput_d01_2015-06-10_14:00:00.e009 echo wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01_2015-06-10_14:00:00.e008 wrfinput_d01_2015-06-10_14:00:00.e009 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01_2015-06-10_14:00:00.e008 wrfinput_d01_2015-06-10_14:00:00.e009 ln -s wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_14:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_14:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_14:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_14:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9434 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_14:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9434 rm -f tmp.9434 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_14:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_14:00:00.e010 set files = ( wrfinput_d01_2015-06-10_14:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_14:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_14:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_14:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_14:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9502 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_14:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9502 rm -f tmp.9502 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_14:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_14:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_14:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01_2015-06-10_14:00:00.e008 wrfinput_d01_2015-06-10_14:00:00.e009 wrfinput_d01_2015-06-10_14:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9502 rm -f tmp.9502 if ( wrfinput_d01_2015-06-10_14:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01_2015-06-10_14:00:00.e008 wrfinput_d01_2015-06-10_14:00:00.e009 wrfinput_d01_2015-06-10_14:00:00.e010 echo wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01_2015-06-10_14:00:00.e008 wrfinput_d01_2015-06-10_14:00:00.e009 wrfinput_d01_2015-06-10_14:00:00.e010 wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01_2015-06-10_14:00:00.e008 wrfinput_d01_2015-06-10_14:00:00.e009 wrfinput_d01_2015-06-10_14:00:00.e010 ln -s wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_14:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_14:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_14:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_14:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_14:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149380 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=14 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_14:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfinput_d02_2015-06-10_14:00:00 ./. + mv wrfinput_d02_2015-06-10_14:00:00 wrfinput_d02_2015-06-10_14:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9619 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_14:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.9619 rm -f tmp.9619 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_14:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_14:00:00.e000 set files = ( wrfinput_d02_2015-06-10_14:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_14:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_14:00:00.e000 wrfinput_d02_2015-06-10_14:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=14 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_14:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9693 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_14:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.9693 rm -f tmp.9693 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_14:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_14:00:00.e001 set files = ( wrfinput_d02_2015-06-10_14:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_14:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_14:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9765 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_14:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.9765 rm -f tmp.9765 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_14:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_14:00:00.e002 set files = ( wrfinput_d02_2015-06-10_14:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_14:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_14:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9837 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_14:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.9837 rm -f tmp.9837 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_14:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_14:00:00.e003 set files = ( wrfinput_d02_2015-06-10_14:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_14:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_14:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9909 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_14:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.9909 rm -f tmp.9909 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_14:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_14:00:00.e004 set files = ( wrfinput_d02_2015-06-10_14:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_14:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_14:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9981 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_14:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.9981 rm -f tmp.9981 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_14:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_14:00:00.e005 set files = ( wrfinput_d02_2015-06-10_14:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_14:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_14:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10053 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_14:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.10053 rm -f tmp.10053 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_14:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_14:00:00.e006 set files = ( wrfinput_d02_2015-06-10_14:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_14:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_14:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10125 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_14:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.10125 rm -f tmp.10125 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_14:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_14:00:00.e007 set files = ( wrfinput_d02_2015-06-10_14:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_14:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_14:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10198 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_14:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.10198 rm -f tmp.10198 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_14:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_14:00:00.e008 set files = ( wrfinput_d02_2015-06-10_14:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_14:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_14:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10272 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_14:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.10272 rm -f tmp.10272 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_14:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_14:00:00.e009 set files = ( wrfinput_d02_2015-06-10_14:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_14:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_14:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10344 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_14:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.10344 rm -f tmp.10344 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_14:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_14:00:00.e010 set files = ( wrfinput_d02_2015-06-10_14:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_14:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_14:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_14:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_14:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149381 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=14 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_14:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfinput_d03_2015-06-10_14:00:00 ./. + mv wrfinput_d03_2015-06-10_14:00:00 wrfinput_d03_2015-06-10_14:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10579 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_14:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.10579 rm -f tmp.10579 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_14:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_14:00:00.e000 set files = ( wrfinput_d03_2015-06-10_14:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_14:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_14:00:00.e000 wrfinput_d03_2015-06-10_14:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=14 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_14:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10653 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_14:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.10653 rm -f tmp.10653 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_14:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_14:00:00.e001 set files = ( wrfinput_d03_2015-06-10_14:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_14:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_14:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10725 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_14:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.10725 rm -f tmp.10725 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_14:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_14:00:00.e002 set files = ( wrfinput_d03_2015-06-10_14:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_14:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_14:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10797 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_14:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.10797 rm -f tmp.10797 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_14:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_14:00:00.e003 set files = ( wrfinput_d03_2015-06-10_14:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_14:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_14:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10869 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_14:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.10869 rm -f tmp.10869 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_14:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_14:00:00.e004 set files = ( wrfinput_d03_2015-06-10_14:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_14:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_14:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10941 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_14:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.10941 rm -f tmp.10941 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_14:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_14:00:00.e005 set files = ( wrfinput_d03_2015-06-10_14:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_14:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_14:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11014 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_14:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.11014 rm -f tmp.11014 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_14:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_14:00:00.e006 set files = ( wrfinput_d03_2015-06-10_14:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_14:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_14:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11086 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_14:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.11086 rm -f tmp.11086 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_14:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_14:00:00.e007 set files = ( wrfinput_d03_2015-06-10_14:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_14:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_14:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11158 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_14:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.11158 rm -f tmp.11158 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_14:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_14:00:00.e008 set files = ( wrfinput_d03_2015-06-10_14:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_14:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_14:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11230 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_14:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.11230 rm -f tmp.11230 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_14:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_14:00:00.e009 set files = ( wrfinput_d03_2015-06-10_14:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_14:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_14:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11302 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_14:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.11302 rm -f tmp.11302 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_14:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_14:00:00.e010 set files = ( wrfinput_d03_2015-06-10_14:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_14:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_14:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_14:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_14:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_14:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_14:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01_2015-06-10_14:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfbdy_d01_2015-06-10_14:00:00 wrfbdy_d01_2015-06-10_14:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_14:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfinput_d02_2015-06-10_14:00:00 wrfinput_d02_2015-06-10_14:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_14:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/real/wrfinput_d03_2015-06-10_14:00:00 wrfinput_d03_2015-06-10_14:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_14:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_14:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01_2015-06-10_14:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e001 wrfbdy_d01_2015-06-10_14:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_14:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e001 wrfinput_d02_2015-06-10_14:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_14:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e001 wrfinput_d03_2015-06-10_14:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_14:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_14:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e002 wrfinput_d01_2015-06-10_14:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e002 wrfbdy_d01_2015-06-10_14:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_14:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e002 wrfinput_d02_2015-06-10_14:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_14:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e002 wrfinput_d03_2015-06-10_14:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_14:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_14:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e003 wrfinput_d01_2015-06-10_14:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e003 wrfbdy_d01_2015-06-10_14:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_14:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e003 wrfinput_d02_2015-06-10_14:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_14:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e003 wrfinput_d03_2015-06-10_14:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_14:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_14:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e004 wrfinput_d01_2015-06-10_14:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e004 wrfbdy_d01_2015-06-10_14:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_14:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e004 wrfinput_d02_2015-06-10_14:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_14:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e004 wrfinput_d03_2015-06-10_14:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_14:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_14:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e005 wrfinput_d01_2015-06-10_14:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e005 wrfbdy_d01_2015-06-10_14:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_14:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e005 wrfinput_d02_2015-06-10_14:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_14:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e005 wrfinput_d03_2015-06-10_14:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_14:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_14:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e006 wrfinput_d01_2015-06-10_14:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e006 wrfbdy_d01_2015-06-10_14:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_14:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e006 wrfinput_d02_2015-06-10_14:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_14:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e006 wrfinput_d03_2015-06-10_14:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_14:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_14:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e007 wrfinput_d01_2015-06-10_14:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e007 wrfbdy_d01_2015-06-10_14:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_14:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e007 wrfinput_d02_2015-06-10_14:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_14:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e007 wrfinput_d03_2015-06-10_14:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_14:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_14:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e008 wrfinput_d01_2015-06-10_14:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e008 wrfbdy_d01_2015-06-10_14:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_14:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e008 wrfinput_d02_2015-06-10_14:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_14:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e008 wrfinput_d03_2015-06-10_14:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_14:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_14:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e009 wrfinput_d01_2015-06-10_14:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e009 wrfbdy_d01_2015-06-10_14:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_14:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e009 wrfinput_d02_2015-06-10_14:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_14:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e009 wrfinput_d03_2015-06-10_14:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_14:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_14:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d01_2015-06-10_14:00:00.e010 wrfinput_d01_2015-06-10_14:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_bc/wrfbdy_d01_2015-06-10_14:00:00.e010 wrfbdy_d01_2015-06-10_14:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_14:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d02_2015-06-10_14:00:00.e010 wrfinput_d02_2015-06-10_14:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_14:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_met_ic/wrfinput_d03_2015-06-10_14:00:00.e010 wrfinput_d03_2015-06-10_14:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061014 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + LE_DATE=2015061015 + export LE_DATE + [[ 2015061014 -le 2015061015 ]] + echo 2015061014 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061014 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_14:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_14:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_14:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_14:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_14:00:00 wrfbiochemi_d01_2015-06-10_14:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_14:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_14:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_14:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11785 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_22475.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149383 + WRFCHEMI=wrfchemi_d02_2015-06-10_14:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_14:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_14:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_14:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_14:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_14:00:00 wrfchemi_d02_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_14:00:00 wrffirechemi_d02_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_14:00:00 wrfbiochemi_d02_2015-06-10_14:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_14:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_14:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_14:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11964 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_19335.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149384 + WRFCHEMI=wrfchemi_d03_2015-06-10_14:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_14:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_14:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_14:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_14:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_14:00:00 wrfchemi_d03_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_14:00:00 wrffirechemi_d03_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_14:00:00 wrfbiochemi_d03_2015-06-10_14:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_14:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_14:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_14:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12039 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_13710.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149396 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061015 ]] + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061014 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_15:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_15:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_15:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_14:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_14:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_15:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_15:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_15:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12268 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_22004.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149397 + WRFCHEMI=wrfchemi_d02_2015-06-10_15:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_15:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_15:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_14:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_14:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_15:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_15:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_15:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12320 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_11473.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149398 + WRFCHEMI=wrfchemi_d03_2015-06-10_15:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_15:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_15:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_14:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_14:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_15:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_15:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_15:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12385 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_24844.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149399 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061015 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_14:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_14:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_14:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 14 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=14 + export L_HH + D_DATE=2015061014 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=14 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=14 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=13 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=14 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061014.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061014.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 14 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=14 + export L_HH + D_DATE=2015061014 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=14 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=14 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=13 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=14 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061014.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061014.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/prepbufr_met_obs/obs_seq_prep_2015061014.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/prepbufr_met_obs/obs_seq_prep_2015061014.out ./obs_seq_MET_2015061014.out + FILE_LIST[1]=obs_seq_MET_2015061014.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/airnow_o3_obs/obs_seq_airnow_o3_2015061014.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/airnow_o3_obs/obs_seq_airnow_o3_2015061014.out ./obs_seq_AIR_O3_2015061014.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061014.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/tolnet_o3_obs/obs_seq_tolnet_o3_2015061014.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/tolnet_o3_obs/obs_seq_tolnet_o3_2015061014.out ./obs_seq_TOL_O3_2015061014.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061014.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061014.out\',\'obs_seq_AIR_O3_2015061014.out\',\'obs_seq_TOL_O3_2015061014.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=48600 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=52200 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 48600, last_obs_days = 151370, last_obs_seconds = 52200, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 5 43 54 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=48600 which is Gregorian day: 2015 Jun 10 13:30:00 Excluding observations after: day=151370, sec=52200 which is Gregorian day: 2015 Jun 10 14:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061014.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 2719 Number of obs really inserted : 2719 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061014.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 2719 Number of obs to be inserted : 938 Number of obs really inserted : 938 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_TOL_O3_2015061014.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: TOLNET observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: TOLNET QC index -------------- Obs seq file # : 3 Number of obs in previous seq : 3657 Number of obs to be inserted : 242 Number of obs really inserted : 242 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 3899 Actual number of obs in the new seq file : 3899 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=48718 Gregorian day: 2015 Jun 10 13:31:58 Last obs time: day=151370, sec=52200 Gregorian day: 2015 Jun 10 14:30:00 Number of obs processed : 3899 --------------------------------------------------------- AIRCRAFT_U_WIND_COMPONENT 4 obs AIRCRAFT_V_WIND_COMPONENT 4 obs AIRCRAFT_TEMPERATURE 13 obs MARINE_SFC_U_WIND_COMPONENT 570 obs MARINE_SFC_V_WIND_COMPONENT 570 obs MARINE_SFC_TEMPERATURE 620 obs MARINE_SFC_SPECIFIC_HUMIDITY 156 obs LAND_SFC_U_WIND_COMPONENT 25 obs LAND_SFC_V_WIND_COMPONENT 25 obs LAND_SFC_TEMPERATURE 25 obs LAND_SFC_SPECIFIC_HUMIDITY 24 obs MARINE_SFC_ALTIMETER 658 obs LAND_SFC_ALTIMETER 25 obs AIRNOW_O3 938 obs TOLNET_O3 242 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 5 43 54 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061014.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_14:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_14:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_14:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_14:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_14:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_14:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48600, last_obs_days = 151370, last_obs_seconds = 52200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 14, 0, 0, last_bin_center = 2015, 6, 10, 14, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 48600, last_obs_days = 151370, last_obs_seconds = 52200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 48600, last_obs_days = 151370, last_obs_seconds = 52200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 54000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/combine_obs/obs_seq_comb_2015061014.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 50400 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149411 + mv obs_seq.new obs_seq_comb_filtered_2015061014.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061015 + export CYCLE_DATE + [[ 2015061015 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061015 + export DATE + echo 2015061015 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061015 + YY=15 + export YY + cut -c5-6 + echo 2015061015 + MM=06 + export MM + cut -c7-8 + echo 2015061015 + DD=10 + export DD + cut -c9-10 + echo 2015061015 + HH=15 + export HH + DATE_SHORT=15061015 + export DATE_SHORT + FILE_DATE=2015-06-10_15:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 -1 + 2> /dev/null + PAST_DATE=2015061014 + export PAST_DATE + cut -c1-4 + echo 2015061014 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061014 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061014 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061014 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061014 + PAST_HH=14 + export PAST_HH + PAST_FILE_DATE=2015-06-10_14:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +1 + 2> /dev/null + NEXT_DATE=2015061016 + export NEXT_DATE + cut -c1-4 + echo 2015061016 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061016 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061016 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061016 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061016 + NEXT_HH=16 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_16:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=15 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 15 + 0 )) + [[ 15 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=15 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 15 + 0 )) + D_DATE=2015061015 + export D_DATE + echo 2015061015 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 54000 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=54000 + export SEC_GREG + echo 2015061016 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 57600 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=57600 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 -30m + 2> /dev/null + ASIM_MIN_DATE=201506101430 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506101430 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506101430 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506101430 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506101430 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506101430 + ASIM_MIN_HH=14 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +30m + 2> /dev/null + ASIM_MAX_DATE=201506101530 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506101530 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506101530 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506101530 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506101530 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506101530 + ASIM_MAX_HH=15 + export ASIM_MAX_HH + echo 201506101430 201506101430 + echo 201506101430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 52200 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=52200 + export ASIM_MIN_SEC_GREG + echo 201506101530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 55800 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=55800 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061015 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061015 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + END_DATE=2015061016 + export END_DATE + cut -c1-4 + echo 2015061015 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061015 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061015 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061015 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061015 + START_HOUR=15 + export START_HOUR + START_FILE_DATE=2015-06-10_15:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061016 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061016 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061016 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061016 + END_HOUR=16 + export END_HOUR + END_FILE_DATE=2015-06-10_16:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061014/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=15,15,15 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=16,16,16 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_14:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_15:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506101430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 52200 + (( temp[1]=52200+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=52201 + export NL_FIRST_OBS_SECONDS + echo 201506101530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 55800 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=55800 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061015 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=15 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=15 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=57600 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 -30m + 2> /dev/null + ASIM_DATE_MIN=201506101430 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +30m + 2> /dev/null + ASIM_DATE_MAX=201506101530 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506101430 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506101430 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506101430 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506101430 + ASIM_MN_HH=14 + export ASIM_MN_HH + cut -c1-4 + echo 201506101530 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506101530 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506101530 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506101530 + ASIM_MX_HH=15 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + E_DATE=2015061016 + export E_DATE + cut -c1-4 + echo 2015061016 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061016 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061016 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061016 + E_HH=16 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061015 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_END_DATE=2015061016 + export L_END_DATE + cut -c1-4 + echo 2015061015 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061015 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061015 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061015 + L_START_HOUR=15 + export L_START_HOUR + cut -c1-4 + echo 2015061016 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061016 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061016 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061016 + L_END_HOUR=16 + export L_END_HOUR + cut -c1-4 + echo 2015061015 + cut -c1-4 + echo 2015061015 + cut -c1-4 + echo 2015061015 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061015 + cut -c5-6 + echo 2015061015 + cut -c5-6 + echo 2015061015 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061015 + cut -c7-8 + echo 2015061015 + cut -c7-8 + echo 2015061015 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061015 + cut -c9-10 + echo 2015061015 + cut -c9-10 + echo 2015061015 + NL_START_HOUR=15,15,15 + export NL_START_HOUR + cut -c1-4 + echo 2015061016 + cut -c1-4 + echo 2015061016 + cut -c1-4 + echo 2015061016 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061016 + cut -c5-6 + echo 2015061016 + cut -c5-6 + echo 2015061016 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061016 + cut -c7-8 + echo 2015061016 + cut -c7-8 + echo 2015061016 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061016 + cut -c9-10 + echo 2015061016 + cut -c9-10 + echo 2015061016 + NL_END_HOUR=16,16,16 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_15:00:00\',\'2015-06-10_15:00:00\',\'2015-06-10_15:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_16:00:00\',\'2015-06-10_16:00:00\',\'2015-06-10_16:00:00\'' + export NL_END_DATE + P_DATE=2015061015 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + P_END_DATE=2015061016 + export P_END_DATE + [[ 2015061015 -le 2015061016 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_15:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_14:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_15:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14290 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23352.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149412 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14304 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12493.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149413 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14318 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2879.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149414 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14345 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1624.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149415 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14358 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26874.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149416 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14372 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15838.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149417 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14399 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26541.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149418 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14412 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7645.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149419 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14426 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4772.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149420 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14453 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2603.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149421 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14467 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1965.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149422 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14480 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15499.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149423 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14507 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22427.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149424 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14521 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22447.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149425 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14534 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_519.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149426 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14561 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23903.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149427 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14575 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26748.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149428 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14588 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3437.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149429 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14616 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20660.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149430 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14629 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3996.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149431 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14642 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25920.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149432 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14674 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15610.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149433 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14687 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23081.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149434 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14700 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18669.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149435 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14728 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10597.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149436 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14741 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20211.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149437 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14755 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26050.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149438 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14782 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4696.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149439 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14795 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16147.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149440 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_14:30:00', / &wrfvar22 time_window_max = '2015-06-10_15:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14809 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27735.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149441 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_15:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_15:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + P_DATE=2015061016 + export P_DATE + [[ 2015061016 -le 2015061016 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_16:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_15:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_16:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23352.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15073 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27498.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149442 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12493.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15087 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13775.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149443 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2879.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15101 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10291.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149444 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1624.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15129 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4029.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149446 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26874.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15142 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30533.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149447 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15838.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15156 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6943.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149448 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26541.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15183 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11590.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149449 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7645.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15197 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15394.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149450 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4772.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15210 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16099.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149451 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2603.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15238 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29759.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149452 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1965.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15251 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32178.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149453 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15499.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15265 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28478.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149454 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22427.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15292 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9390.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149455 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22447.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15306 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23646.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149456 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_519.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15319 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11249.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149457 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23903.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15347 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5152.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149458 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26748.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15361 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11343.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149459 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3437.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15374 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2244.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149460 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20660.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15402 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28744.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149461 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3996.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15415 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4521.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149462 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25920.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15430 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27718.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149463 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15610.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15457 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2464.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149464 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23081.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15472 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24458.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149465 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18669.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15485 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18859.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149466 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10597.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15513 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18303.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149467 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20211.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15526 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22615.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149468 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26050.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15540 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14106.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149469 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4696.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -f hhddmmyycc + NL_SEED_ARRAY1=1510061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061015 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + [[ 15 -ge 00 ]] + [[ 15 -lt 06 ]] + [[ 15 -ge 06 ]] + [[ 15 -lt 12 ]] + [[ 15 -ge 12 ]] + [[ 15 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15567 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7106.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149470 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16147.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15581 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25956.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149471 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27735.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 15,15,15, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 16,16,16, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15594 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16122.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149472 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + P_DATE=2015061017 + export P_DATE + [[ 2015061017 -le 2015061016 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 15, 0, 0, last_bin_center = 2015, 6, 10, 15, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061015 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_END_DATE=2015061016 + export L_END_DATE + TRANDOM=23949 + [[ 2015061015 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + NEXT_L_DATE=2015061016 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_16:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15897 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16264.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149474 + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_15:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 15, 0, 0, last_bin_center = 2015, 6, 10, 15, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061015 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_END_DATE=2015061016 + export L_END_DATE + TRANDOM=23949 + [[ 2015061015 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + NEXT_L_DATE=2015061016 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_16:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16108 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13014.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149475 + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_15:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 15, 0, 0, last_bin_center = 2015, 6, 10, 15, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061015 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_END_DATE=2015061016 + export L_END_DATE + TRANDOM=23949 + [[ 2015061015 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + NEXT_L_DATE=2015061016 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_16:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16325 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7648.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149476 + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_15:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 15, 0, 0, last_bin_center = 2015, 6, 10, 15, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061015 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_END_DATE=2015061016 + export L_END_DATE + TRANDOM=23949 + [[ 2015061015 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + NEXT_L_DATE=2015061016 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_16:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16536 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28828.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149477 + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_15:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 15, 0, 0, last_bin_center = 2015, 6, 10, 15, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061015 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_END_DATE=2015061016 + export L_END_DATE + TRANDOM=23949 + [[ 2015061015 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + NEXT_L_DATE=2015061016 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_16:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16748 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8241.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149478 + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_15:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 15, 0, 0, last_bin_center = 2015, 6, 10, 15, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061015 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_END_DATE=2015061016 + export L_END_DATE + TRANDOM=23949 + [[ 2015061015 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + NEXT_L_DATE=2015061016 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_16:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16959 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21243.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149479 + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_15:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 15, 0, 0, last_bin_center = 2015, 6, 10, 15, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061015 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_END_DATE=2015061016 + export L_END_DATE + TRANDOM=23949 + [[ 2015061015 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + NEXT_L_DATE=2015061016 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_16:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17172 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_258.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149480 + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_15:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 15, 0, 0, last_bin_center = 2015, 6, 10, 15, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061015 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_END_DATE=2015061016 + export L_END_DATE + TRANDOM=23949 + [[ 2015061015 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + NEXT_L_DATE=2015061016 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_16:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17508 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30799.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149482 + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_15:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 15, 0, 0, last_bin_center = 2015, 6, 10, 15, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061015 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_END_DATE=2015061016 + export L_END_DATE + TRANDOM=23949 + [[ 2015061015 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + NEXT_L_DATE=2015061016 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_16:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17720 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_25720.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149483 + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_15:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 15, 0, 0, last_bin_center = 2015, 6, 10, 15, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061014.out','obs_seq_AIR_O3_2015061014.out','obs_seq_TOL_O3_2015061014.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52201, last_obs_days = 151370, last_obs_seconds = 55800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061015 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_END_DATE=2015061016 + export L_END_DATE + TRANDOM=23949 + [[ 2015061015 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + NEXT_L_DATE=2015061016 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_16:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17931 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19707.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149484 + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -lt 2015061016 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_15:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfinput_d02_2015-06-10_15:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfinput_d03_2015-06-10_15:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfinput_d02_2015-06-10_15:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfinput_d03_2015-06-10_15:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi + L_DATE=2015061015 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + LE_DATE=2015061016 + export LE_DATE + [[ 2015061015 -le 2015061016 ]] + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_15:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_15:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_15:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_15:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061016 ]] + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_16:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_16:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_16:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_16:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_16:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061016 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061015 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149485 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=15 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_15:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_15:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfinput_d01_2015-06-10_15:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 ./. + mv wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e000 + mv wrfbdy_d01_2015-06-10_15:00:00 wrfbdy_d01_2015-06-10_15:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18072 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_15:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.18072 rm -f tmp.18072 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_15:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_15:00:00.e000 set files = ( wrfinput_d01_2015-06-10_15:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_15:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18139 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_15:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.18139 rm -f tmp.18139 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_15:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_15:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_15:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_15:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.18139 rm -f tmp.18139 if ( wrfinput_d01_2015-06-10_15:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_15:00:00.e000 echo wrfinput_d01_2015-06-10_15:00:00.e000 wrfinput_d01_2015-06-10_15:00:00.e000 ln -s wrfinput_d01_2015-06-10_15:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_15:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_15:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_15:00:00.e000 wrfinput_d01_2015-06-10_15:00:00 + mv wrfbdy_d01_2015-06-10_15:00:00.e000 wrfbdy_d01_2015-06-10_15:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=15 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_15:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_15:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18225 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_15:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.18225 rm -f tmp.18225 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_15:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_15:00:00.e001 set files = ( wrfinput_d01_2015-06-10_15:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18292 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_15:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.18292 rm -f tmp.18292 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_15:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_15:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_15:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.18292 rm -f tmp.18292 if ( wrfinput_d01_2015-06-10_15:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 echo wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 ln -s wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_15:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_15:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_15:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_15:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18374 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_15:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.18374 rm -f tmp.18374 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_15:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_15:00:00.e002 set files = ( wrfinput_d01_2015-06-10_15:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18442 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_15:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.18442 rm -f tmp.18442 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_15:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_15:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_15:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.18442 rm -f tmp.18442 if ( wrfinput_d01_2015-06-10_15:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 echo wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 ln -s wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_15:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_15:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_15:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_15:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18524 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_15:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.18524 rm -f tmp.18524 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_15:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_15:00:00.e003 set files = ( wrfinput_d01_2015-06-10_15:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18591 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_15:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.18591 rm -f tmp.18591 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_15:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_15:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_15:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.18591 rm -f tmp.18591 if ( wrfinput_d01_2015-06-10_15:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 echo wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 ln -s wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_15:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_15:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_15:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_15:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18673 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_15:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.18673 rm -f tmp.18673 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_15:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_15:00:00.e004 set files = ( wrfinput_d01_2015-06-10_15:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18741 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_15:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.18741 rm -f tmp.18741 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_15:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_15:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_15:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.18741 rm -f tmp.18741 if ( wrfinput_d01_2015-06-10_15:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 echo wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 ln -s wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_15:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_15:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_15:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_15:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18827 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_15:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.18827 rm -f tmp.18827 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_15:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_15:00:00.e005 set files = ( wrfinput_d01_2015-06-10_15:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18896 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_15:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.18896 rm -f tmp.18896 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_15:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_15:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_15:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.18896 rm -f tmp.18896 if ( wrfinput_d01_2015-06-10_15:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 echo wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 ln -s wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_15:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_15:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_15:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_15:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18978 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_15:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.18978 rm -f tmp.18978 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_15:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_15:00:00.e006 set files = ( wrfinput_d01_2015-06-10_15:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19045 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_15:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.19045 rm -f tmp.19045 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_15:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_15:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_15:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.19045 rm -f tmp.19045 if ( wrfinput_d01_2015-06-10_15:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 echo wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 ln -s wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_15:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_15:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_15:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_15:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19127 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_15:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.19127 rm -f tmp.19127 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_15:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_15:00:00.e007 set files = ( wrfinput_d01_2015-06-10_15:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19195 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_15:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.19195 rm -f tmp.19195 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_15:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_15:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_15:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.19195 rm -f tmp.19195 if ( wrfinput_d01_2015-06-10_15:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 echo wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 ln -s wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_15:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_15:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_15:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_15:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19277 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_15:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.19277 rm -f tmp.19277 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_15:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_15:00:00.e008 set files = ( wrfinput_d01_2015-06-10_15:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19344 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_15:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.19344 rm -f tmp.19344 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_15:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_15:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_15:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01_2015-06-10_15:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.19344 rm -f tmp.19344 if ( wrfinput_d01_2015-06-10_15:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01_2015-06-10_15:00:00.e008 echo wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01_2015-06-10_15:00:00.e008 ln -s wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_15:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_15:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_15:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_15:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19426 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_15:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.19426 rm -f tmp.19426 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_15:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_15:00:00.e009 set files = ( wrfinput_d01_2015-06-10_15:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_15:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19494 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_15:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.19494 rm -f tmp.19494 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_15:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_15:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_15:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_d01_2015-06-10_15:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.19494 rm -f tmp.19494 if ( wrfinput_d01_2015-06-10_15:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_d01_2015-06-10_15:00:00.e009 echo wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_d01_2015-06-10_15:00:00.e009 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_d01_2015-06-10_15:00:00.e009 ln -s wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_15:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_15:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_15:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_15:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19576 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_15:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.19576 rm -f tmp.19576 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_15:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_15:00:00.e010 set files = ( wrfinput_d01_2015-06-10_15:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_15:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_15:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_15:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_15:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19643 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_15:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.19643 rm -f tmp.19643 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_15:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_15:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_15:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_d01_2015-06-10_15:00:00.e009 wrfinput_d01_2015-06-10_15:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.19643 rm -f tmp.19643 if ( wrfinput_d01_2015-06-10_15:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_d01_2015-06-10_15:00:00.e009 wrfinput_d01_2015-06-10_15:00:00.e010 echo wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_d01_2015-06-10_15:00:00.e009 wrfinput_d01_2015-06-10_15:00:00.e010 wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_d01_2015-06-10_15:00:00.e009 wrfinput_d01_2015-06-10_15:00:00.e010 ln -s wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_15:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_15:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_15:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_15:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_15:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149486 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=15 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_15:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfinput_d02_2015-06-10_15:00:00 ./. + mv wrfinput_d02_2015-06-10_15:00:00 wrfinput_d02_2015-06-10_15:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.19760 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_15:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.19760 rm -f tmp.19760 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_15:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_15:00:00.e000 set files = ( wrfinput_d02_2015-06-10_15:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_15:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_15:00:00.e000 wrfinput_d02_2015-06-10_15:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=15 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_15:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.19835 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_15:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.19835 rm -f tmp.19835 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_15:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_15:00:00.e001 set files = ( wrfinput_d02_2015-06-10_15:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_15:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_15:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.19909 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_15:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.19909 rm -f tmp.19909 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_15:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_15:00:00.e002 set files = ( wrfinput_d02_2015-06-10_15:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_15:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_15:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.19981 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_15:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.19981 rm -f tmp.19981 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_15:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_15:00:00.e003 set files = ( wrfinput_d02_2015-06-10_15:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_15:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_15:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20053 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_15:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.20053 rm -f tmp.20053 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_15:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_15:00:00.e004 set files = ( wrfinput_d02_2015-06-10_15:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_15:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_15:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20125 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_15:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.20125 rm -f tmp.20125 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_15:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_15:00:00.e005 set files = ( wrfinput_d02_2015-06-10_15:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_15:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_15:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20197 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_15:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.20197 rm -f tmp.20197 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_15:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_15:00:00.e006 set files = ( wrfinput_d02_2015-06-10_15:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_15:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_15:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20269 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_15:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.20269 rm -f tmp.20269 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_15:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_15:00:00.e007 set files = ( wrfinput_d02_2015-06-10_15:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_15:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_15:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20341 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_15:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.20341 rm -f tmp.20341 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_15:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_15:00:00.e008 set files = ( wrfinput_d02_2015-06-10_15:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_15:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_15:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20413 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_15:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.20413 rm -f tmp.20413 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_15:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_15:00:00.e009 set files = ( wrfinput_d02_2015-06-10_15:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_15:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_15:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20485 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_15:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.20485 rm -f tmp.20485 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_15:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_15:00:00.e010 set files = ( wrfinput_d02_2015-06-10_15:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_15:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_15:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_15:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_15:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149489 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=15 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_15:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfinput_d03_2015-06-10_15:00:00 ./. + mv wrfinput_d03_2015-06-10_15:00:00 wrfinput_d03_2015-06-10_15:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.20719 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_15:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.20719 rm -f tmp.20719 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_15:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_15:00:00.e000 set files = ( wrfinput_d03_2015-06-10_15:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_15:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_15:00:00.e000 wrfinput_d03_2015-06-10_15:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=15 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_15:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.20793 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_15:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.20793 rm -f tmp.20793 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_15:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_15:00:00.e001 set files = ( wrfinput_d03_2015-06-10_15:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_15:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_15:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.20865 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_15:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.20865 rm -f tmp.20865 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_15:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_15:00:00.e002 set files = ( wrfinput_d03_2015-06-10_15:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_15:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_15:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.20937 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_15:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.20937 rm -f tmp.20937 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_15:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_15:00:00.e003 set files = ( wrfinput_d03_2015-06-10_15:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_15:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_15:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21009 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_15:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.21009 rm -f tmp.21009 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_15:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_15:00:00.e004 set files = ( wrfinput_d03_2015-06-10_15:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_15:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_15:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21081 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_15:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.21081 rm -f tmp.21081 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_15:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_15:00:00.e005 set files = ( wrfinput_d03_2015-06-10_15:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_15:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_15:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21153 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_15:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.21153 rm -f tmp.21153 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_15:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_15:00:00.e006 set files = ( wrfinput_d03_2015-06-10_15:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_15:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_15:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21229 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_15:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.21229 rm -f tmp.21229 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_15:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_15:00:00.e007 set files = ( wrfinput_d03_2015-06-10_15:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_15:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_15:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21301 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_15:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.21301 rm -f tmp.21301 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_15:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_15:00:00.e008 set files = ( wrfinput_d03_2015-06-10_15:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_15:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_15:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21373 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_15:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.21373 rm -f tmp.21373 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_15:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_15:00:00.e009 set files = ( wrfinput_d03_2015-06-10_15:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_15:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_15:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21445 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_15:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21445 rm -f tmp.21445 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_15:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_15:00:00.e010 set files = ( wrfinput_d03_2015-06-10_15:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_15:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_15:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_15:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_15:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_15:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_15:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01_2015-06-10_15:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfbdy_d01_2015-06-10_15:00:00 wrfbdy_d01_2015-06-10_15:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_15:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfinput_d02_2015-06-10_15:00:00 wrfinput_d02_2015-06-10_15:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_15:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/real/wrfinput_d03_2015-06-10_15:00:00 wrfinput_d03_2015-06-10_15:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_15:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_15:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01_2015-06-10_15:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e001 wrfbdy_d01_2015-06-10_15:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_15:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e001 wrfinput_d02_2015-06-10_15:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_15:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e001 wrfinput_d03_2015-06-10_15:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_15:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_15:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_d01_2015-06-10_15:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e002 wrfbdy_d01_2015-06-10_15:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_15:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e002 wrfinput_d02_2015-06-10_15:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_15:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e002 wrfinput_d03_2015-06-10_15:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_15:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_15:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_d01_2015-06-10_15:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e003 wrfbdy_d01_2015-06-10_15:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_15:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e003 wrfinput_d02_2015-06-10_15:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_15:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e003 wrfinput_d03_2015-06-10_15:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_15:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_15:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_d01_2015-06-10_15:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e004 wrfbdy_d01_2015-06-10_15:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_15:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e004 wrfinput_d02_2015-06-10_15:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_15:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e004 wrfinput_d03_2015-06-10_15:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_15:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_15:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_d01_2015-06-10_15:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e005 wrfbdy_d01_2015-06-10_15:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_15:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e005 wrfinput_d02_2015-06-10_15:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_15:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e005 wrfinput_d03_2015-06-10_15:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_15:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_15:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_d01_2015-06-10_15:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e006 wrfbdy_d01_2015-06-10_15:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_15:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e006 wrfinput_d02_2015-06-10_15:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_15:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e006 wrfinput_d03_2015-06-10_15:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_15:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_15:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_d01_2015-06-10_15:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e007 wrfbdy_d01_2015-06-10_15:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_15:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e007 wrfinput_d02_2015-06-10_15:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_15:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e007 wrfinput_d03_2015-06-10_15:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_15:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_15:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_d01_2015-06-10_15:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e008 wrfbdy_d01_2015-06-10_15:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_15:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e008 wrfinput_d02_2015-06-10_15:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_15:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e008 wrfinput_d03_2015-06-10_15:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_15:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_15:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e009 wrfinput_d01_2015-06-10_15:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e009 wrfbdy_d01_2015-06-10_15:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_15:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e009 wrfinput_d02_2015-06-10_15:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_15:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e009 wrfinput_d03_2015-06-10_15:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_15:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_15:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e010 wrfinput_d01_2015-06-10_15:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_bc/wrfbdy_d01_2015-06-10_15:00:00.e010 wrfbdy_d01_2015-06-10_15:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_15:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d02_2015-06-10_15:00:00.e010 wrfinput_d02_2015-06-10_15:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_15:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_met_ic/wrfinput_d03_2015-06-10_15:00:00.e010 wrfinput_d03_2015-06-10_15:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061015 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + LE_DATE=2015061016 + export LE_DATE + [[ 2015061015 -le 2015061016 ]] + echo 2015061015 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061015 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_15:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_15:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_15:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_15:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_15:00:00 wrfbiochemi_d01_2015-06-10_15:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_15:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_15:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_15:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21922 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_15271.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149494 + WRFCHEMI=wrfchemi_d02_2015-06-10_15:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_15:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_15:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_15:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_15:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_15:00:00 wrfchemi_d02_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_15:00:00 wrffirechemi_d02_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_15:00:00 wrfbiochemi_d02_2015-06-10_15:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_15:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_15:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_15:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22099 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_13062.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149495 + WRFCHEMI=wrfchemi_d03_2015-06-10_15:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_15:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_15:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_15:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_15:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_15:00:00 wrfchemi_d03_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_15:00:00 wrffirechemi_d03_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_15:00:00 wrfbiochemi_d03_2015-06-10_15:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_15:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_15:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_15:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22165 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_27612.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149496 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061016 ]] + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061015 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_16:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_16:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_16:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_15:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_15:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_16:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_16:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_16:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22396 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_8026.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149497 + WRFCHEMI=wrfchemi_d02_2015-06-10_16:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_16:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_16:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_15:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_15:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_16:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_16:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_16:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22447 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_11025.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149498 + WRFCHEMI=wrfchemi_d03_2015-06-10_16:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_16:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_16:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_15:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_15:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_16:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_16:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_16:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22512 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_16303.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149499 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061016 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_15:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_15:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_15:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 15 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=15 + export L_HH + D_DATE=2015061015 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=15 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=15 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=14 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=15 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061015.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061015.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 15 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=15 + export L_HH + D_DATE=2015061015 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=15 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=15 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=14 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=15 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061015.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061015.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/prepbufr_met_obs/obs_seq_prep_2015061015.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/prepbufr_met_obs/obs_seq_prep_2015061015.out ./obs_seq_MET_2015061015.out + FILE_LIST[1]=obs_seq_MET_2015061015.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/airnow_o3_obs/obs_seq_airnow_o3_2015061015.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/airnow_o3_obs/obs_seq_airnow_o3_2015061015.out ./obs_seq_AIR_O3_2015061015.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061015.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/tolnet_o3_obs/obs_seq_tolnet_o3_2015061015.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/tolnet_o3_obs/obs_seq_tolnet_o3_2015061015.out ./obs_seq_TOL_O3_2015061015.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061015.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061015.out\',\'obs_seq_AIR_O3_2015061015.out\',\'obs_seq_TOL_O3_2015061015.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=52200 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=55800 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 52200, last_obs_days = 151370, last_obs_seconds = 55800, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 6 3 48 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=52200 which is Gregorian day: 2015 Jun 10 14:30:00 Excluding observations after: day=151370, sec=55800 which is Gregorian day: 2015 Jun 10 15:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061015.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 2764 Number of obs really inserted : 2764 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061015.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 2764 Number of obs to be inserted : 931 Number of obs really inserted : 931 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_TOL_O3_2015061015.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: TOLNET observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: TOLNET QC index -------------- Obs seq file # : 3 Number of obs in previous seq : 3695 Number of obs to be inserted : 605 Number of obs really inserted : 605 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 4300 Actual number of obs in the new seq file : 4300 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=52380 Gregorian day: 2015 Jun 10 14:33:00 Last obs time: day=151370, sec=55800 Gregorian day: 2015 Jun 10 15:30:00 Number of obs processed : 4300 --------------------------------------------------------- AIRCRAFT_U_WIND_COMPONENT 1 obs AIRCRAFT_V_WIND_COMPONENT 1 obs AIRCRAFT_TEMPERATURE 5 obs MARINE_SFC_U_WIND_COMPONENT 449 obs MARINE_SFC_V_WIND_COMPONENT 449 obs MARINE_SFC_TEMPERATURE 493 obs MARINE_SFC_SPECIFIC_HUMIDITY 103 obs LAND_SFC_U_WIND_COMPONENT 147 obs LAND_SFC_V_WIND_COMPONENT 147 obs LAND_SFC_TEMPERATURE 152 obs LAND_SFC_SPECIFIC_HUMIDITY 138 obs MARINE_SFC_ALTIMETER 527 obs LAND_SFC_ALTIMETER 152 obs AIRNOW_O3 931 obs TOLNET_O3 605 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 6 3 48 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061015.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_15:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_15:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_15:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_15:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_15:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52200, last_obs_days = 151370, last_obs_seconds = 55800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 15, 0, 0, last_bin_center = 2015, 6, 10, 15, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 52200, last_obs_days = 151370, last_obs_seconds = 55800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 52200, last_obs_days = 151370, last_obs_seconds = 55800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 57600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/combine_obs/obs_seq_comb_2015061015.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 54000 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149520 + mv obs_seq.new obs_seq_comb_filtered_2015061015.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061016 + export CYCLE_DATE + [[ 2015061016 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061016 + export DATE + cut -c1-4 + echo 2015061016 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061016 + YY=15 + export YY + cut -c5-6 + echo 2015061016 + MM=06 + export MM + cut -c7-8 + echo 2015061016 + DD=10 + export DD + cut -c9-10 + echo 2015061016 + HH=16 + export HH + DATE_SHORT=15061016 + export DATE_SHORT + FILE_DATE=2015-06-10_16:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 -1 + 2> /dev/null + PAST_DATE=2015061015 + export PAST_DATE + cut -c1-4 + echo 2015061015 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061015 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061015 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061015 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061015 + PAST_HH=15 + export PAST_HH + PAST_FILE_DATE=2015-06-10_15:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +1 + 2> /dev/null + NEXT_DATE=2015061017 + export NEXT_DATE + cut -c1-4 + echo 2015061017 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061017 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061017 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061017 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061017 + NEXT_HH=17 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_17:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=16 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 16 + 0 )) + [[ 16 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=16 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 16 + 0 )) + D_DATE=2015061016 + export D_DATE + echo 2015061016 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 57600 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=57600 + export SEC_GREG + echo 2015061017 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 61200 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=61200 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 -30m + 2> /dev/null + ASIM_MIN_DATE=201506101530 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506101530 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506101530 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506101530 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506101530 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506101530 + ASIM_MIN_HH=15 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +30m + 2> /dev/null + ASIM_MAX_DATE=201506101630 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506101630 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506101630 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506101630 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506101630 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506101630 + ASIM_MAX_HH=16 + export ASIM_MAX_HH + echo 201506101530 201506101530 + echo 201506101530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 55800 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=55800 + export ASIM_MIN_SEC_GREG + echo 201506101630 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 59400 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=59400 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061016 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061016 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + END_DATE=2015061017 + export END_DATE + cut -c1-4 + echo 2015061016 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061016 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061016 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061016 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061016 + START_HOUR=16 + export START_HOUR + START_FILE_DATE=2015-06-10_16:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061017 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061017 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061017 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061017 + END_HOUR=17 + export END_HOUR + END_FILE_DATE=2015-06-10_17:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061015/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=16,16,16 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=17,17,17 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_15:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_16:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506101530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 55800 + (( temp[1]=55800+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=55801 + export NL_FIRST_OBS_SECONDS + echo 201506101630 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 59400 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=59400 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061016 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=16 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=16 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=61200 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 -30m + 2> /dev/null + ASIM_DATE_MIN=201506101530 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +30m + 2> /dev/null + ASIM_DATE_MAX=201506101630 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506101530 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506101530 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506101530 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506101530 + ASIM_MN_HH=15 + export ASIM_MN_HH + cut -c1-4 + echo 201506101630 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506101630 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506101630 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506101630 + ASIM_MX_HH=16 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + E_DATE=2015061017 + export E_DATE + cut -c1-4 + echo 2015061017 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061017 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061017 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061017 + E_HH=17 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061016 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_END_DATE=2015061017 + export L_END_DATE + cut -c1-4 + echo 2015061016 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061016 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061016 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061016 + L_START_HOUR=16 + export L_START_HOUR + cut -c1-4 + echo 2015061017 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061017 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061017 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061017 + L_END_HOUR=17 + export L_END_HOUR + cut -c1-4 + echo 2015061016 + cut -c1-4 + echo 2015061016 + cut -c1-4 + echo 2015061016 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061016 + cut -c5-6 + echo 2015061016 + cut -c5-6 + echo 2015061016 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061016 + cut -c7-8 + echo 2015061016 + cut -c7-8 + echo 2015061016 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061016 + cut -c9-10 + echo 2015061016 + cut -c9-10 + echo 2015061016 + NL_START_HOUR=16,16,16 + export NL_START_HOUR + cut -c1-4 + echo 2015061017 + cut -c1-4 + echo 2015061017 + cut -c1-4 + echo 2015061017 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061017 + cut -c5-6 + echo 2015061017 + cut -c5-6 + echo 2015061017 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061017 + cut -c7-8 + echo 2015061017 + cut -c7-8 + echo 2015061017 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061017 + cut -c9-10 + echo 2015061017 + cut -c9-10 + echo 2015061017 + NL_END_HOUR=17,17,17 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_16:00:00\',\'2015-06-10_16:00:00\',\'2015-06-10_16:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_17:00:00\',\'2015-06-10_17:00:00\',\'2015-06-10_17:00:00\'' + export NL_END_DATE + P_DATE=2015061016 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + P_END_DATE=2015061017 + export P_END_DATE + [[ 2015061016 -le 2015061017 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_16:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_15:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_16:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24442 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16238.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149521 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24457 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13501.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149522 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24471 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21795.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149523 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24498 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24533.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149524 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24512 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32573.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149525 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24525 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13646.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149526 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24553 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17029.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149527 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24566 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31823.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149528 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24580 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26637.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149529 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24607 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16431.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149530 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24621 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14078.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149531 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24635 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30516.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149532 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24662 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4588.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149533 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24675 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_179.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149534 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24689 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27809.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149535 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24716 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12626.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149536 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24730 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22413.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149537 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24743 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31119.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149538 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24770 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8962.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149539 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24784 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24304.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149540 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24797 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12758.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149541 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24825 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28230.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149542 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24838 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21768.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149543 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24851 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18186.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149544 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24879 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20160.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149545 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24892 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16037.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149546 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24905 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9190.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149547 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24933 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28806.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149548 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24946 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25868.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149549 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_16:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_16:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:30:00', / &wrfvar22 time_window_max = '2015-06-10_16:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_16:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24959 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16510.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149550 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_16:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_16:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_16:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + P_DATE=2015061017 + export P_DATE + [[ 2015061017 -le 2015061017 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_17:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_16:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_17:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16238.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25534 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2017.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149553 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13501.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25548 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28904.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149554 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21795.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25562 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10144.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149555 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24533.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25590 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28673.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149556 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32573.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25603 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3822.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149557 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13646.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25617 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23254.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149558 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17029.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25644 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5156.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149559 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31823.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25659 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18750.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149561 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26637.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25674 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15741.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149563 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16431.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25701 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30089.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149565 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14078.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25715 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10020.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149567 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30516.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25728 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28141.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149569 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4588.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25756 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12099.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149571 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_179.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25769 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19305.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149573 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27809.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25783 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4596.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149575 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12626.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25810 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21389.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149577 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22413.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25824 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20392.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149579 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31119.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25837 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31772.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149580 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8962.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25866 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2366.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149581 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24304.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25880 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1636.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149582 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12758.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25894 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16310.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149583 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28230.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25922 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18984.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149584 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21768.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25936 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28869.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149585 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18186.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25949 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2075.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149586 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20160.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25977 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_331.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149587 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16037.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25995 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4566.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149588 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9190.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26008 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14786.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149589 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28806.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -f hhddmmyycc + NL_SEED_ARRAY1=1610061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061016 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + [[ 16 -ge 00 ]] + [[ 16 -lt 06 ]] + [[ 16 -ge 06 ]] + [[ 16 -lt 12 ]] + [[ 16 -ge 12 ]] + [[ 16 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26035 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32282.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149590 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25868.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26049 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30136.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149591 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16510.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 16,16,16, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 17,17,17, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26062 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1622.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149592 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + P_DATE=2015061018 + export P_DATE + [[ 2015061018 -le 2015061017 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 16, 0, 0, last_bin_center = 2015, 6, 10, 16, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061016 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_END_DATE=2015061017 + export L_END_DATE + TRANDOM=23949 + [[ 2015061016 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + NEXT_L_DATE=2015061017 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_17:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26902 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_29519.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149603 + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_16:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 16, 0, 0, last_bin_center = 2015, 6, 10, 16, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061016 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_END_DATE=2015061017 + export L_END_DATE + TRANDOM=23949 + [[ 2015061016 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + NEXT_L_DATE=2015061017 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_17:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27147 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27602.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149604 + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_16:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 16, 0, 0, last_bin_center = 2015, 6, 10, 16, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061016 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_END_DATE=2015061017 + export L_END_DATE + TRANDOM=23949 + [[ 2015061016 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + NEXT_L_DATE=2015061017 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_17:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27366 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30541.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149605 + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_16:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 16, 0, 0, last_bin_center = 2015, 6, 10, 16, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061016 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_END_DATE=2015061017 + export L_END_DATE + TRANDOM=23949 + [[ 2015061016 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + NEXT_L_DATE=2015061017 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_17:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27577 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30342.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149606 + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_16:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 16, 0, 0, last_bin_center = 2015, 6, 10, 16, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061016 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_END_DATE=2015061017 + export L_END_DATE + TRANDOM=23949 + [[ 2015061016 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + NEXT_L_DATE=2015061017 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_17:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27788 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16831.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149607 + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_16:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 16, 0, 0, last_bin_center = 2015, 6, 10, 16, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061016 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_END_DATE=2015061017 + export L_END_DATE + TRANDOM=23949 + [[ 2015061016 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + NEXT_L_DATE=2015061017 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_17:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28001 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8157.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149608 + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_16:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 16, 0, 0, last_bin_center = 2015, 6, 10, 16, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061016 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_END_DATE=2015061017 + export L_END_DATE + TRANDOM=23949 + [[ 2015061016 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + NEXT_L_DATE=2015061017 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_17:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28212 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20202.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149610 + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_16:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 16, 0, 0, last_bin_center = 2015, 6, 10, 16, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061016 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_END_DATE=2015061017 + export L_END_DATE + TRANDOM=23949 + [[ 2015061016 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + NEXT_L_DATE=2015061017 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_17:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28550 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30661.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149612 + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_16:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 16, 0, 0, last_bin_center = 2015, 6, 10, 16, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061016 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_END_DATE=2015061017 + export L_END_DATE + TRANDOM=23949 + [[ 2015061016 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + NEXT_L_DATE=2015061017 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_17:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28761 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5310.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149614 + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_16:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 16, 0, 0, last_bin_center = 2015, 6, 10, 16, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061015.out','obs_seq_AIR_O3_2015061015.out','obs_seq_TOL_O3_2015061015.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55801, last_obs_days = 151370, last_obs_seconds = 59400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061016 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_END_DATE=2015061017 + export L_END_DATE + TRANDOM=23949 + [[ 2015061016 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + NEXT_L_DATE=2015061017 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_17:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28972 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_24269.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149616 + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -lt 2015061017 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_16:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_16:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfinput_d02_2015-06-10_16:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfinput_d03_2015-06-10_16:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfinput_d02_2015-06-10_16:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfinput_d03_2015-06-10_16:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi + L_DATE=2015061016 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + LE_DATE=2015061017 + export LE_DATE + [[ 2015061016 -le 2015061017 ]] + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_16:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_16:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_16:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_16:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_16:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061017 ]] + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_17:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_17:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_17:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_17:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_17:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061017 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061016 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149622 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=16 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_16:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_16:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfinput_d01_2015-06-10_16:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 ./. + mv wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e000 + mv wrfbdy_d01_2015-06-10_16:00:00 wrfbdy_d01_2015-06-10_16:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29111 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_16:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.29111 rm -f tmp.29111 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_16:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_16:00:00.e000 set files = ( wrfinput_d01_2015-06-10_16:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_16:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29179 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_16:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.29179 rm -f tmp.29179 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_16:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_16:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_16:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_16:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.29179 rm -f tmp.29179 if ( wrfinput_d01_2015-06-10_16:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_16:00:00.e000 echo wrfinput_d01_2015-06-10_16:00:00.e000 wrfinput_d01_2015-06-10_16:00:00.e000 ln -s wrfinput_d01_2015-06-10_16:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_16:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_16:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_16:00:00.e000 wrfinput_d01_2015-06-10_16:00:00 + mv wrfbdy_d01_2015-06-10_16:00:00.e000 wrfbdy_d01_2015-06-10_16:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=16 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_16:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_16:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29264 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_16:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.29264 rm -f tmp.29264 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_16:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_16:00:00.e001 set files = ( wrfinput_d01_2015-06-10_16:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29332 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_16:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.29332 rm -f tmp.29332 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_16:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_16:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_16:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.29332 rm -f tmp.29332 if ( wrfinput_d01_2015-06-10_16:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 echo wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 ln -s wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_16:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_16:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_16:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_16:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29416 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_16:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.29416 rm -f tmp.29416 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_16:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_16:00:00.e002 set files = ( wrfinput_d01_2015-06-10_16:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29483 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_16:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.29483 rm -f tmp.29483 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_16:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_16:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_16:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.29483 rm -f tmp.29483 if ( wrfinput_d01_2015-06-10_16:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 echo wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 ln -s wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_16:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_16:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_16:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_16:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29565 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_16:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.29565 rm -f tmp.29565 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_16:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_16:00:00.e003 set files = ( wrfinput_d01_2015-06-10_16:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29633 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_16:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.29633 rm -f tmp.29633 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_16:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_16:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_16:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.29633 rm -f tmp.29633 if ( wrfinput_d01_2015-06-10_16:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 echo wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 ln -s wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_16:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_16:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_16:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_16:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29715 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_16:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.29715 rm -f tmp.29715 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_16:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_16:00:00.e004 set files = ( wrfinput_d01_2015-06-10_16:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29787 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_16:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.29787 rm -f tmp.29787 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_16:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_16:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_16:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.29787 rm -f tmp.29787 if ( wrfinput_d01_2015-06-10_16:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 echo wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 ln -s wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_16:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_16:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_16:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_16:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29869 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_16:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.29869 rm -f tmp.29869 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_16:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_16:00:00.e005 set files = ( wrfinput_d01_2015-06-10_16:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29937 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_16:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.29937 rm -f tmp.29937 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_16:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_16:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_16:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.29937 rm -f tmp.29937 if ( wrfinput_d01_2015-06-10_16:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 echo wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 ln -s wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_16:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_16:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_16:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_16:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30019 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_16:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.30019 rm -f tmp.30019 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_16:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_16:00:00.e006 set files = ( wrfinput_d01_2015-06-10_16:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30087 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_16:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.30087 rm -f tmp.30087 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_16:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_16:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_16:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.30087 rm -f tmp.30087 if ( wrfinput_d01_2015-06-10_16:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 echo wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 ln -s wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_16:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_16:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_16:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_16:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30169 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_16:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.30169 rm -f tmp.30169 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_16:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_16:00:00.e007 set files = ( wrfinput_d01_2015-06-10_16:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30236 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_16:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.30236 rm -f tmp.30236 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_16:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_16:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_16:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.30236 rm -f tmp.30236 if ( wrfinput_d01_2015-06-10_16:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 echo wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 ln -s wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_16:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_16:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_16:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_16:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30318 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_16:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.30318 rm -f tmp.30318 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_16:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_16:00:00.e008 set files = ( wrfinput_d01_2015-06-10_16:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_16:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30386 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_16:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.30386 rm -f tmp.30386 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_16:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_16:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_16:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01_2015-06-10_16:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.30386 rm -f tmp.30386 if ( wrfinput_d01_2015-06-10_16:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01_2015-06-10_16:00:00.e008 echo wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01_2015-06-10_16:00:00.e008 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01_2015-06-10_16:00:00.e008 ln -s wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_16:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_16:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_16:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_16:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30468 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_16:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.30468 rm -f tmp.30468 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_16:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_16:00:00.e009 set files = ( wrfinput_d01_2015-06-10_16:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_16:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30535 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_16:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.30535 rm -f tmp.30535 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_16:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_16:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_16:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01_2015-06-10_16:00:00.e008 wrfinput_d01_2015-06-10_16:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.30535 rm -f tmp.30535 if ( wrfinput_d01_2015-06-10_16:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01_2015-06-10_16:00:00.e008 wrfinput_d01_2015-06-10_16:00:00.e009 echo wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01_2015-06-10_16:00:00.e008 wrfinput_d01_2015-06-10_16:00:00.e009 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01_2015-06-10_16:00:00.e008 wrfinput_d01_2015-06-10_16:00:00.e009 ln -s wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_16:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_16:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_16:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_16:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30617 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_16:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.30617 rm -f tmp.30617 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_16:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_16:00:00.e010 set files = ( wrfinput_d01_2015-06-10_16:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_16:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_16:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_16:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_16:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30685 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_16:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.30685 rm -f tmp.30685 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_16:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_16:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_16:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01_2015-06-10_16:00:00.e008 wrfinput_d01_2015-06-10_16:00:00.e009 wrfinput_d01_2015-06-10_16:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.30685 rm -f tmp.30685 if ( wrfinput_d01_2015-06-10_16:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01_2015-06-10_16:00:00.e008 wrfinput_d01_2015-06-10_16:00:00.e009 wrfinput_d01_2015-06-10_16:00:00.e010 echo wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01_2015-06-10_16:00:00.e008 wrfinput_d01_2015-06-10_16:00:00.e009 wrfinput_d01_2015-06-10_16:00:00.e010 wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01_2015-06-10_16:00:00.e008 wrfinput_d01_2015-06-10_16:00:00.e009 wrfinput_d01_2015-06-10_16:00:00.e010 ln -s wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_16:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_16:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_16:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_16:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_16:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149625 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=16 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_16:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfinput_d02_2015-06-10_16:00:00 ./. + mv wrfinput_d02_2015-06-10_16:00:00 wrfinput_d02_2015-06-10_16:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30802 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_16:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.30802 rm -f tmp.30802 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_16:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_16:00:00.e000 set files = ( wrfinput_d02_2015-06-10_16:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_16:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_16:00:00.e000 wrfinput_d02_2015-06-10_16:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=16 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_16:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30876 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_16:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.30876 rm -f tmp.30876 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_16:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_16:00:00.e001 set files = ( wrfinput_d02_2015-06-10_16:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_16:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_16:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30948 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_16:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.30948 rm -f tmp.30948 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_16:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_16:00:00.e002 set files = ( wrfinput_d02_2015-06-10_16:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_16:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_16:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.31021 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_16:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.31021 rm -f tmp.31021 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_16:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_16:00:00.e003 set files = ( wrfinput_d02_2015-06-10_16:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_16:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_16:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.31094 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_16:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.31094 rm -f tmp.31094 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_16:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_16:00:00.e004 set files = ( wrfinput_d02_2015-06-10_16:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_16:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_16:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.31166 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_16:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.31166 rm -f tmp.31166 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_16:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_16:00:00.e005 set files = ( wrfinput_d02_2015-06-10_16:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_16:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_16:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.31238 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_16:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.31238 rm -f tmp.31238 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_16:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_16:00:00.e006 set files = ( wrfinput_d02_2015-06-10_16:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_16:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_16:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.31311 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_16:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.31311 rm -f tmp.31311 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_16:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_16:00:00.e007 set files = ( wrfinput_d02_2015-06-10_16:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_16:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_16:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.31383 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_16:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.31383 rm -f tmp.31383 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_16:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_16:00:00.e008 set files = ( wrfinput_d02_2015-06-10_16:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_16:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_16:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.31455 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_16:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.31455 rm -f tmp.31455 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_16:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_16:00:00.e009 set files = ( wrfinput_d02_2015-06-10_16:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_16:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_16:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.31528 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_16:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.31528 rm -f tmp.31528 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_16:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_16:00:00.e010 set files = ( wrfinput_d02_2015-06-10_16:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_16:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_16:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_16:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_16:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149626 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=16 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_16:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfinput_d03_2015-06-10_16:00:00 ./. + mv wrfinput_d03_2015-06-10_16:00:00 wrfinput_d03_2015-06-10_16:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31759 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_16:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.31759 rm -f tmp.31759 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_16:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_16:00:00.e000 set files = ( wrfinput_d03_2015-06-10_16:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_16:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_16:00:00.e000 wrfinput_d03_2015-06-10_16:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=16 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_16:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31833 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_16:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.31833 rm -f tmp.31833 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_16:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_16:00:00.e001 set files = ( wrfinput_d03_2015-06-10_16:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_16:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_16:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31905 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_16:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.31905 rm -f tmp.31905 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_16:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_16:00:00.e002 set files = ( wrfinput_d03_2015-06-10_16:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_16:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_16:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31977 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_16:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.31977 rm -f tmp.31977 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_16:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_16:00:00.e003 set files = ( wrfinput_d03_2015-06-10_16:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_16:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_16:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.32053 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_16:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.32053 rm -f tmp.32053 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_16:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_16:00:00.e004 set files = ( wrfinput_d03_2015-06-10_16:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_16:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_16:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.32127 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_16:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.32127 rm -f tmp.32127 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_16:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_16:00:00.e005 set files = ( wrfinput_d03_2015-06-10_16:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_16:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_16:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.32199 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_16:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.32199 rm -f tmp.32199 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_16:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_16:00:00.e006 set files = ( wrfinput_d03_2015-06-10_16:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_16:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_16:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.32271 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_16:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.32271 rm -f tmp.32271 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_16:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_16:00:00.e007 set files = ( wrfinput_d03_2015-06-10_16:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_16:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_16:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.32343 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_16:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.32343 rm -f tmp.32343 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_16:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_16:00:00.e008 set files = ( wrfinput_d03_2015-06-10_16:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_16:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_16:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.32415 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_16:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.32415 rm -f tmp.32415 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_16:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_16:00:00.e009 set files = ( wrfinput_d03_2015-06-10_16:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_16:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_16:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.32487 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_16:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.32487 rm -f tmp.32487 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_16:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_16:00:00.e010 set files = ( wrfinput_d03_2015-06-10_16:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_16:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_16:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_16:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_16:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_16:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_16:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01_2015-06-10_16:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfbdy_d01_2015-06-10_16:00:00 wrfbdy_d01_2015-06-10_16:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_16:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfinput_d02_2015-06-10_16:00:00 wrfinput_d02_2015-06-10_16:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_16:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/real/wrfinput_d03_2015-06-10_16:00:00 wrfinput_d03_2015-06-10_16:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_16:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_16:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01_2015-06-10_16:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e001 wrfbdy_d01_2015-06-10_16:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_16:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e001 wrfinput_d02_2015-06-10_16:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_16:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e001 wrfinput_d03_2015-06-10_16:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_16:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_16:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e002 wrfinput_d01_2015-06-10_16:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e002 wrfbdy_d01_2015-06-10_16:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_16:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e002 wrfinput_d02_2015-06-10_16:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_16:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e002 wrfinput_d03_2015-06-10_16:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_16:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_16:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e003 wrfinput_d01_2015-06-10_16:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e003 wrfbdy_d01_2015-06-10_16:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_16:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e003 wrfinput_d02_2015-06-10_16:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_16:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e003 wrfinput_d03_2015-06-10_16:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_16:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_16:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e004 wrfinput_d01_2015-06-10_16:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e004 wrfbdy_d01_2015-06-10_16:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_16:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e004 wrfinput_d02_2015-06-10_16:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_16:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e004 wrfinput_d03_2015-06-10_16:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_16:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_16:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e005 wrfinput_d01_2015-06-10_16:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e005 wrfbdy_d01_2015-06-10_16:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_16:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e005 wrfinput_d02_2015-06-10_16:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_16:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e005 wrfinput_d03_2015-06-10_16:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_16:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_16:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e006 wrfinput_d01_2015-06-10_16:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e006 wrfbdy_d01_2015-06-10_16:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_16:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e006 wrfinput_d02_2015-06-10_16:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_16:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e006 wrfinput_d03_2015-06-10_16:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_16:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_16:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e007 wrfinput_d01_2015-06-10_16:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e007 wrfbdy_d01_2015-06-10_16:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_16:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e007 wrfinput_d02_2015-06-10_16:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_16:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e007 wrfinput_d03_2015-06-10_16:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_16:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_16:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e008 wrfinput_d01_2015-06-10_16:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e008 wrfbdy_d01_2015-06-10_16:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_16:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e008 wrfinput_d02_2015-06-10_16:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_16:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e008 wrfinput_d03_2015-06-10_16:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_16:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_16:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e009 wrfinput_d01_2015-06-10_16:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e009 wrfbdy_d01_2015-06-10_16:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_16:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e009 wrfinput_d02_2015-06-10_16:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_16:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e009 wrfinput_d03_2015-06-10_16:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_16:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_16:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d01_2015-06-10_16:00:00.e010 wrfinput_d01_2015-06-10_16:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_bc/wrfbdy_d01_2015-06-10_16:00:00.e010 wrfbdy_d01_2015-06-10_16:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_16:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d02_2015-06-10_16:00:00.e010 wrfinput_d02_2015-06-10_16:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_16:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_met_ic/wrfinput_d03_2015-06-10_16:00:00.e010 wrfinput_d03_2015-06-10_16:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061016 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + LE_DATE=2015061017 + export LE_DATE + [[ 2015061016 -le 2015061017 ]] + echo 2015061016 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061016 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_16:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_16:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_16:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_16:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_16:00:00 wrfbiochemi_d01_2015-06-10_16:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_16:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_16:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_16:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=629 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_8317.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149627 + WRFCHEMI=wrfchemi_d02_2015-06-10_16:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_16:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_16:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_16:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_16:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_16:00:00 wrfchemi_d02_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_16:00:00 wrffirechemi_d02_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_16:00:00 wrfbiochemi_d02_2015-06-10_16:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_16:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_16:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_16:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=682 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_22339.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149628 + WRFCHEMI=wrfchemi_d03_2015-06-10_16:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_16:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_16:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_16:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_16:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_16:00:00 wrfchemi_d03_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_16:00:00 wrffirechemi_d03_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_16:00:00 wrfbiochemi_d03_2015-06-10_16:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_16:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_16:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_16:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=748 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_12202.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149629 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061017 ]] + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061016 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_17:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_17:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_17:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_16:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_16:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_17:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_17:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_17:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=979 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_29682.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149630 + WRFCHEMI=wrfchemi_d02_2015-06-10_17:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_17:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_17:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_16:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_16:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_17:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_17:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_17:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1032 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_27847.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149631 + WRFCHEMI=wrfchemi_d03_2015-06-10_17:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_17:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_17:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_16:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_16:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_17:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_17:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_17:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1096 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_4141.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149632 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061017 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_16:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_16:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_16:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 16 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=16 + export L_HH + D_DATE=2015061016 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=16 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=16 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=15 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=16 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061016.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061016.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 16 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=16 + export L_HH + D_DATE=2015061016 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=16 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=16 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=15 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=16 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061016.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061016.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/prepbufr_met_obs/obs_seq_prep_2015061016.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/prepbufr_met_obs/obs_seq_prep_2015061016.out ./obs_seq_MET_2015061016.out + FILE_LIST[1]=obs_seq_MET_2015061016.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/airnow_o3_obs/obs_seq_airnow_o3_2015061016.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/airnow_o3_obs/obs_seq_airnow_o3_2015061016.out ./obs_seq_AIR_O3_2015061016.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061016.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/tolnet_o3_obs/obs_seq_tolnet_o3_2015061016.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/tolnet_o3_obs/obs_seq_tolnet_o3_2015061016.out ./obs_seq_TOL_O3_2015061016.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061016.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061016.out\',\'obs_seq_AIR_O3_2015061016.out\',\'obs_seq_TOL_O3_2015061016.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=55800 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=59400 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 55800, last_obs_days = 151370, last_obs_seconds = 59400, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 6 29 55 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=55800 which is Gregorian day: 2015 Jun 10 15:30:00 Excluding observations after: day=151370, sec=59400 which is Gregorian day: 2015 Jun 10 16:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061016.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 2742 Number of obs really inserted : 2742 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061016.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 2742 Number of obs to be inserted : 937 Number of obs really inserted : 937 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_TOL_O3_2015061016.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: TOLNET observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: TOLNET QC index -------------- Obs seq file # : 3 Number of obs in previous seq : 3679 Number of obs to be inserted : 605 Number of obs really inserted : 605 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 4284 Actual number of obs in the new seq file : 4284 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=55861 Gregorian day: 2015 Jun 10 15:31:01 Last obs time: day=151370, sec=59400 Gregorian day: 2015 Jun 10 16:30:00 Number of obs processed : 4284 --------------------------------------------------------- AIRCRAFT_U_WIND_COMPONENT 5 obs AIRCRAFT_V_WIND_COMPONENT 5 obs AIRCRAFT_TEMPERATURE 9 obs MARINE_SFC_U_WIND_COMPONENT 564 obs MARINE_SFC_V_WIND_COMPONENT 564 obs MARINE_SFC_TEMPERATURE 614 obs MARINE_SFC_SPECIFIC_HUMIDITY 157 obs LAND_SFC_U_WIND_COMPONENT 37 obs LAND_SFC_V_WIND_COMPONENT 37 obs LAND_SFC_TEMPERATURE 37 obs LAND_SFC_SPECIFIC_HUMIDITY 23 obs MARINE_SFC_ALTIMETER 653 obs LAND_SFC_ALTIMETER 37 obs AIRNOW_O3 937 obs TOLNET_O3 605 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 6 29 55 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061016.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_16:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_16:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_16:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_16:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_16:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_16:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55800, last_obs_days = 151370, last_obs_seconds = 59400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 16, 0, 0, last_bin_center = 2015, 6, 10, 16, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 55800, last_obs_days = 151370, last_obs_seconds = 59400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 55800, last_obs_days = 151370, last_obs_seconds = 59400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 61200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/combine_obs/obs_seq_comb_2015061016.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 57600 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149634 + mv obs_seq.new obs_seq_comb_filtered_2015061016.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061017 + export CYCLE_DATE + [[ 2015061017 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061017 + export DATE + echo 2015061017 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061017 + YY=15 + export YY + cut -c5-6 + echo 2015061017 + MM=06 + export MM + cut -c7-8 + echo 2015061017 + DD=10 + export DD + cut -c9-10 + echo 2015061017 + HH=17 + export HH + DATE_SHORT=15061017 + export DATE_SHORT + FILE_DATE=2015-06-10_17:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 -1 + 2> /dev/null + PAST_DATE=2015061016 + export PAST_DATE + cut -c1-4 + echo 2015061016 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061016 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061016 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061016 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061016 + PAST_HH=16 + export PAST_HH + PAST_FILE_DATE=2015-06-10_16:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +1 + 2> /dev/null + NEXT_DATE=2015061018 + export NEXT_DATE + cut -c1-4 + echo 2015061018 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061018 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061018 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061018 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061018 + NEXT_HH=18 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_18:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=17 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 17 + 0 )) + [[ 17 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=17 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 17 + 0 )) + D_DATE=2015061017 + export D_DATE + echo 2015061017 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 61200 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=61200 + export SEC_GREG + echo 2015061018 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 64800 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=64800 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 -30m + 2> /dev/null + ASIM_MIN_DATE=201506101630 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506101630 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506101630 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506101630 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506101630 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506101630 + ASIM_MIN_HH=16 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +30m + 2> /dev/null + ASIM_MAX_DATE=201506101730 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506101730 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506101730 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506101730 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506101730 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506101730 + ASIM_MAX_HH=17 + export ASIM_MAX_HH + echo 201506101630 201506101630 + echo 201506101630 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 59400 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=59400 + export ASIM_MIN_SEC_GREG + echo 201506101730 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 63000 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=63000 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061017 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061017 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + END_DATE=2015061018 + export END_DATE + cut -c1-4 + echo 2015061017 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061017 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061017 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061017 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061017 + START_HOUR=17 + export START_HOUR + START_FILE_DATE=2015-06-10_17:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061018 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061018 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061018 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061018 + END_HOUR=18 + export END_HOUR + END_FILE_DATE=2015-06-10_18:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061016/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=17,17,17 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=18,18,18 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_16:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_17:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506101630 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 59400 + (( temp[1]=59400+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=59401 + export NL_FIRST_OBS_SECONDS + echo 201506101730 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 63000 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=63000 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061017 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=17 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=17 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=64800 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 -30m + 2> /dev/null + ASIM_DATE_MIN=201506101630 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +30m + 2> /dev/null + ASIM_DATE_MAX=201506101730 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506101630 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506101630 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506101630 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506101630 + ASIM_MN_HH=16 + export ASIM_MN_HH + cut -c1-4 + echo 201506101730 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506101730 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506101730 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506101730 + ASIM_MX_HH=17 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + E_DATE=2015061018 + export E_DATE + cut -c1-4 + echo 2015061018 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061018 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061018 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061018 + E_HH=18 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061017 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + cut -c1-4 + echo 2015061017 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061017 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061017 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061017 + L_START_HOUR=17 + export L_START_HOUR + cut -c1-4 + echo 2015061018 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061018 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061018 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061018 + L_END_HOUR=18 + export L_END_HOUR + cut -c1-4 + echo 2015061017 + cut -c1-4 + echo 2015061017 + cut -c1-4 + echo 2015061017 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061017 + cut -c5-6 + echo 2015061017 + cut -c5-6 + echo 2015061017 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061017 + cut -c7-8 + echo 2015061017 + cut -c7-8 + echo 2015061017 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061017 + cut -c9-10 + echo 2015061017 + cut -c9-10 + echo 2015061017 + NL_START_HOUR=17,17,17 + export NL_START_HOUR + cut -c1-4 + echo 2015061018 + cut -c1-4 + echo 2015061018 + cut -c1-4 + echo 2015061018 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061018 + cut -c5-6 + echo 2015061018 + cut -c5-6 + echo 2015061018 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061018 + cut -c7-8 + echo 2015061018 + cut -c7-8 + echo 2015061018 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061018 + cut -c9-10 + echo 2015061018 + cut -c9-10 + echo 2015061018 + NL_END_HOUR=18,18,18 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_17:00:00\',\'2015-06-10_17:00:00\',\'2015-06-10_17:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_18:00:00\',\'2015-06-10_18:00:00\',\'2015-06-10_18:00:00\'' + export NL_END_DATE + P_DATE=2015061017 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + P_END_DATE=2015061018 + export P_END_DATE + [[ 2015061017 -le 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_17:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_16:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_17:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3086 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16624.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149635 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3100 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16229.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149636 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3120 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18129.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149637 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3148 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15549.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149638 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3163 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10575.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149639 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3176 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31672.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149640 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3206 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21331.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149641 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3221 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11415.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149642 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3234 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29784.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149643 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3264 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32267.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149644 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3277 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16594.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149645 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3290 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29306.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149646 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3319 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7491.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149647 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3334 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_954.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149648 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3349 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24113.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149649 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3387 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20013.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149650 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3400 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7076.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149651 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3413 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20888.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149652 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3442 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8843.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149653 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3455 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22010.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149654 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3476 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14175.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149655 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3507 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25968.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149656 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3520 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11302.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149657 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3534 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11090.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149658 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3569 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23119.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149659 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3582 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6888.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149660 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3597 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28896.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149661 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3624 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21318.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149662 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3637 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23776.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149663 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_17:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_17:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_16:30:00', / &wrfvar22 time_window_max = '2015-06-10_17:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_17:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3651 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2173.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149664 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_17:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_17:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_17:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + P_DATE=2015061018 + export P_DATE + [[ 2015061018 -le 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_18:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_17:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_18:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16624.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4315 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12271.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149665 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16229.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4329 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5637.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149666 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18129.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4343 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20327.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149667 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15549.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4370 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24863.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149668 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10575.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4384 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24551.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149669 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31672.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4397 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12472.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149670 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21331.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4425 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6042.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149671 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11415.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4439 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16010.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149672 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29784.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4452 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13040.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149673 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32267.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4480 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6184.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149674 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16594.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4493 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30395.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149675 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29306.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4507 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30693.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149676 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7491.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4535 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10023.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149677 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_954.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4548 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29522.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149678 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24113.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4562 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14970.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149679 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20013.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4589 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14528.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149680 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7076.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4603 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2690.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149681 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20888.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4617 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12279.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149682 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8843.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4645 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9693.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149683 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22010.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4658 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10050.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149684 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14175.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4672 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2660.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149685 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25968.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4699 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_860.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149686 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11302.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4717 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15639.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149687 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11090.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4731 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12397.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149688 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23119.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4759 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6961.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149689 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6888.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4772 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11037.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149690 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28896.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4786 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5853.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149691 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21318.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -f hhddmmyycc + NL_SEED_ARRAY1=1710061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061017 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + [[ 17 -ge 00 ]] + [[ 17 -lt 06 ]] + [[ 17 -ge 06 ]] + [[ 17 -lt 12 ]] + [[ 17 -ge 12 ]] + [[ 17 -lt 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4814 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3856.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149692 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23776.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4827 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8681.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149693 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2173.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1710061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 17,17,17, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 18,18,18, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4840 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30782.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149694 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + P_DATE=2015061019 + export P_DATE + [[ 2015061019 -le 2015061018 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 17, 0, 0, last_bin_center = 2015, 6, 10, 17, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061017 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=23949 + [[ 2015061017 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5648 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12578.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149695 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_17:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 17, 0, 0, last_bin_center = 2015, 6, 10, 17, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061017 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=23949 + [[ 2015061017 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5859 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32740.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149696 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_17:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 17, 0, 0, last_bin_center = 2015, 6, 10, 17, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061017 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=23949 + [[ 2015061017 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6072 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_22431.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149697 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_17:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 17, 0, 0, last_bin_center = 2015, 6, 10, 17, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061017 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=23949 + [[ 2015061017 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6284 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12513.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149698 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_17:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 17, 0, 0, last_bin_center = 2015, 6, 10, 17, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061017 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=23949 + [[ 2015061017 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6627 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11769.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149699 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_17:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 17, 0, 0, last_bin_center = 2015, 6, 10, 17, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061017 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=23949 + [[ 2015061017 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6838 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12135.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149700 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_17:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 17, 0, 0, last_bin_center = 2015, 6, 10, 17, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061017 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=23949 + [[ 2015061017 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7051 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21346.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149701 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_17:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 17, 0, 0, last_bin_center = 2015, 6, 10, 17, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061017 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=23949 + [[ 2015061017 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7263 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15257.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149702 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_17:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 17, 0, 0, last_bin_center = 2015, 6, 10, 17, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061017 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=23949 + [[ 2015061017 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7476 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30052.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149703 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_17:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 17, 0, 0, last_bin_center = 2015, 6, 10, 17, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061016.out','obs_seq_AIR_O3_2015061016.out','obs_seq_TOL_O3_2015061016.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59401, last_obs_days = 151370, last_obs_seconds = 63000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061017 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=23949 + [[ 2015061017 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7691 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_4114.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149704 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_17:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_17:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfinput_d02_2015-06-10_17:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfinput_d03_2015-06-10_17:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfinput_d02_2015-06-10_17:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfinput_d03_2015-06-10_17:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi + L_DATE=2015061017 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + LE_DATE=2015061018 + export LE_DATE + [[ 2015061017 -le 2015061018 ]] + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_17:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_17:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_17:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_17:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_17:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_18:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_18:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_18:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_18:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061017 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149705 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=17 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_17:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_17:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfinput_d01_2015-06-10_17:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 ./. + mv wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e000 + mv wrfbdy_d01_2015-06-10_17:00:00 wrfbdy_d01_2015-06-10_17:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7833 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_17:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.7833 rm -f tmp.7833 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_17:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_17:00:00.e000 set files = ( wrfinput_d01_2015-06-10_17:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_17:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7901 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_17:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.7901 rm -f tmp.7901 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_17:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_17:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_17:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_17:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.7901 rm -f tmp.7901 if ( wrfinput_d01_2015-06-10_17:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_17:00:00.e000 echo wrfinput_d01_2015-06-10_17:00:00.e000 wrfinput_d01_2015-06-10_17:00:00.e000 ln -s wrfinput_d01_2015-06-10_17:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_17:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_17:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_17:00:00.e000 wrfinput_d01_2015-06-10_17:00:00 + mv wrfbdy_d01_2015-06-10_17:00:00.e000 wrfbdy_d01_2015-06-10_17:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=17 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_17:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_17:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7986 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_17:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.7986 rm -f tmp.7986 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_17:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_17:00:00.e001 set files = ( wrfinput_d01_2015-06-10_17:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8054 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_17:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8054 rm -f tmp.8054 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_17:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_17:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_17:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8054 rm -f tmp.8054 if ( wrfinput_d01_2015-06-10_17:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 echo wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 ln -s wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_17:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_17:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_17:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_17:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8136 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_17:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8136 rm -f tmp.8136 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_17:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_17:00:00.e002 set files = ( wrfinput_d01_2015-06-10_17:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8204 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_17:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8204 rm -f tmp.8204 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_17:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_17:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_17:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8204 rm -f tmp.8204 if ( wrfinput_d01_2015-06-10_17:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 echo wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 ln -s wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_17:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_17:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_17:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_17:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8287 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_17:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8287 rm -f tmp.8287 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_17:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_17:00:00.e003 set files = ( wrfinput_d01_2015-06-10_17:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8356 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_17:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8356 rm -f tmp.8356 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_17:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_17:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_17:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8356 rm -f tmp.8356 if ( wrfinput_d01_2015-06-10_17:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 echo wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 ln -s wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_17:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_17:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_17:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_17:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8438 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_17:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.8438 rm -f tmp.8438 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_17:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_17:00:00.e004 set files = ( wrfinput_d01_2015-06-10_17:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8505 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_17:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.8505 rm -f tmp.8505 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_17:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_17:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_17:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.8505 rm -f tmp.8505 if ( wrfinput_d01_2015-06-10_17:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 echo wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 ln -s wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_17:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_17:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_17:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_17:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8587 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_17:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.8587 rm -f tmp.8587 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_17:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_17:00:00.e005 set files = ( wrfinput_d01_2015-06-10_17:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8655 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_17:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.8655 rm -f tmp.8655 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_17:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_17:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_17:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.8655 rm -f tmp.8655 if ( wrfinput_d01_2015-06-10_17:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 echo wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 ln -s wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_17:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_17:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_17:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_17:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8737 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_17:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.8737 rm -f tmp.8737 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_17:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_17:00:00.e006 set files = ( wrfinput_d01_2015-06-10_17:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8805 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_17:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.8805 rm -f tmp.8805 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_17:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_17:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_17:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.8805 rm -f tmp.8805 if ( wrfinput_d01_2015-06-10_17:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 echo wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 ln -s wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_17:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_17:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_17:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_17:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8887 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_17:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.8887 rm -f tmp.8887 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_17:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_17:00:00.e007 set files = ( wrfinput_d01_2015-06-10_17:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8954 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_17:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.8954 rm -f tmp.8954 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_17:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_17:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_17:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.8954 rm -f tmp.8954 if ( wrfinput_d01_2015-06-10_17:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 echo wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 ln -s wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_17:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_17:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_17:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_17:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9036 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_17:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9036 rm -f tmp.9036 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_17:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_17:00:00.e008 set files = ( wrfinput_d01_2015-06-10_17:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_17:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9104 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_17:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9104 rm -f tmp.9104 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_17:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_17:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_17:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01_2015-06-10_17:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9104 rm -f tmp.9104 if ( wrfinput_d01_2015-06-10_17:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01_2015-06-10_17:00:00.e008 echo wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01_2015-06-10_17:00:00.e008 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01_2015-06-10_17:00:00.e008 ln -s wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_17:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_17:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_17:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_17:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9187 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_17:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9187 rm -f tmp.9187 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_17:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_17:00:00.e009 set files = ( wrfinput_d01_2015-06-10_17:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_17:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9261 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_17:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9261 rm -f tmp.9261 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_17:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_17:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_17:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01_2015-06-10_17:00:00.e008 wrfinput_d01_2015-06-10_17:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9261 rm -f tmp.9261 if ( wrfinput_d01_2015-06-10_17:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01_2015-06-10_17:00:00.e008 wrfinput_d01_2015-06-10_17:00:00.e009 echo wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01_2015-06-10_17:00:00.e008 wrfinput_d01_2015-06-10_17:00:00.e009 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01_2015-06-10_17:00:00.e008 wrfinput_d01_2015-06-10_17:00:00.e009 ln -s wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_17:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_17:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_17:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_17:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9345 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_17:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9345 rm -f tmp.9345 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_17:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_17:00:00.e010 set files = ( wrfinput_d01_2015-06-10_17:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_17:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_17:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_17:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_17:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9413 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_17:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9413 rm -f tmp.9413 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_17:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_17:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_17:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01_2015-06-10_17:00:00.e008 wrfinput_d01_2015-06-10_17:00:00.e009 wrfinput_d01_2015-06-10_17:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9413 rm -f tmp.9413 if ( wrfinput_d01_2015-06-10_17:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01_2015-06-10_17:00:00.e008 wrfinput_d01_2015-06-10_17:00:00.e009 wrfinput_d01_2015-06-10_17:00:00.e010 echo wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01_2015-06-10_17:00:00.e008 wrfinput_d01_2015-06-10_17:00:00.e009 wrfinput_d01_2015-06-10_17:00:00.e010 wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01_2015-06-10_17:00:00.e008 wrfinput_d01_2015-06-10_17:00:00.e009 wrfinput_d01_2015-06-10_17:00:00.e010 ln -s wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_17:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_17:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_17:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_17:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_17:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149706 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=17 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_17:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfinput_d02_2015-06-10_17:00:00 ./. + mv wrfinput_d02_2015-06-10_17:00:00 wrfinput_d02_2015-06-10_17:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9670 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_17:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.9670 rm -f tmp.9670 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_17:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_17:00:00.e000 set files = ( wrfinput_d02_2015-06-10_17:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_17:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_17:00:00.e000 wrfinput_d02_2015-06-10_17:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=17 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_17:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9745 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_17:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.9745 rm -f tmp.9745 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_17:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_17:00:00.e001 set files = ( wrfinput_d02_2015-06-10_17:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_17:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_17:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9817 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_17:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.9817 rm -f tmp.9817 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_17:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_17:00:00.e002 set files = ( wrfinput_d02_2015-06-10_17:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_17:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_17:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9889 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_17:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.9889 rm -f tmp.9889 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_17:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_17:00:00.e003 set files = ( wrfinput_d02_2015-06-10_17:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_17:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_17:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9961 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_17:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.9961 rm -f tmp.9961 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_17:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_17:00:00.e004 set files = ( wrfinput_d02_2015-06-10_17:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_17:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_17:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10033 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_17:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.10033 rm -f tmp.10033 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_17:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_17:00:00.e005 set files = ( wrfinput_d02_2015-06-10_17:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_17:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_17:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10105 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_17:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.10105 rm -f tmp.10105 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_17:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_17:00:00.e006 set files = ( wrfinput_d02_2015-06-10_17:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_17:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_17:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10178 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_17:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.10178 rm -f tmp.10178 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_17:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_17:00:00.e007 set files = ( wrfinput_d02_2015-06-10_17:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_17:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_17:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10251 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_17:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.10251 rm -f tmp.10251 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_17:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_17:00:00.e008 set files = ( wrfinput_d02_2015-06-10_17:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_17:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_17:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10324 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_17:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.10324 rm -f tmp.10324 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_17:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_17:00:00.e009 set files = ( wrfinput_d02_2015-06-10_17:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_17:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_17:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10396 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_17:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.10396 rm -f tmp.10396 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_17:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_17:00:00.e010 set files = ( wrfinput_d02_2015-06-10_17:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_17:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_17:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_17:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_17:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149708 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=17 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_17:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfinput_d03_2015-06-10_17:00:00 ./. + mv wrfinput_d03_2015-06-10_17:00:00 wrfinput_d03_2015-06-10_17:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10505 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_17:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.10505 rm -f tmp.10505 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_17:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_17:00:00.e000 set files = ( wrfinput_d03_2015-06-10_17:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_17:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_17:00:00.e000 wrfinput_d03_2015-06-10_17:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=17 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_17:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10579 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_17:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.10579 rm -f tmp.10579 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_17:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_17:00:00.e001 set files = ( wrfinput_d03_2015-06-10_17:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_17:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_17:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10651 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_17:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.10651 rm -f tmp.10651 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_17:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_17:00:00.e002 set files = ( wrfinput_d03_2015-06-10_17:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_17:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_17:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10723 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_17:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.10723 rm -f tmp.10723 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_17:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_17:00:00.e003 set files = ( wrfinput_d03_2015-06-10_17:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_17:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_17:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10795 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_17:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.10795 rm -f tmp.10795 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_17:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_17:00:00.e004 set files = ( wrfinput_d03_2015-06-10_17:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_17:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_17:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10867 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_17:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.10867 rm -f tmp.10867 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_17:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_17:00:00.e005 set files = ( wrfinput_d03_2015-06-10_17:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_17:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_17:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10939 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_17:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.10939 rm -f tmp.10939 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_17:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_17:00:00.e006 set files = ( wrfinput_d03_2015-06-10_17:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_17:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_17:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11011 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_17:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.11011 rm -f tmp.11011 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_17:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_17:00:00.e007 set files = ( wrfinput_d03_2015-06-10_17:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_17:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_17:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11084 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_17:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.11084 rm -f tmp.11084 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_17:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_17:00:00.e008 set files = ( wrfinput_d03_2015-06-10_17:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_17:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_17:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11156 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_17:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.11156 rm -f tmp.11156 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_17:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_17:00:00.e009 set files = ( wrfinput_d03_2015-06-10_17:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_17:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_17:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11228 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_17:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.11228 rm -f tmp.11228 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_17:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_17:00:00.e010 set files = ( wrfinput_d03_2015-06-10_17:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_17:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_17:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_17:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_17:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_17:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_17:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01_2015-06-10_17:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfbdy_d01_2015-06-10_17:00:00 wrfbdy_d01_2015-06-10_17:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_17:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfinput_d02_2015-06-10_17:00:00 wrfinput_d02_2015-06-10_17:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_17:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/real/wrfinput_d03_2015-06-10_17:00:00 wrfinput_d03_2015-06-10_17:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_17:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_17:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01_2015-06-10_17:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e001 wrfbdy_d01_2015-06-10_17:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_17:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e001 wrfinput_d02_2015-06-10_17:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_17:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e001 wrfinput_d03_2015-06-10_17:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_17:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_17:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e002 wrfinput_d01_2015-06-10_17:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e002 wrfbdy_d01_2015-06-10_17:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_17:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e002 wrfinput_d02_2015-06-10_17:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_17:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e002 wrfinput_d03_2015-06-10_17:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_17:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_17:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e003 wrfinput_d01_2015-06-10_17:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e003 wrfbdy_d01_2015-06-10_17:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_17:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e003 wrfinput_d02_2015-06-10_17:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_17:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e003 wrfinput_d03_2015-06-10_17:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_17:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_17:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e004 wrfinput_d01_2015-06-10_17:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e004 wrfbdy_d01_2015-06-10_17:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_17:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e004 wrfinput_d02_2015-06-10_17:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_17:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e004 wrfinput_d03_2015-06-10_17:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_17:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_17:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e005 wrfinput_d01_2015-06-10_17:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e005 wrfbdy_d01_2015-06-10_17:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_17:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e005 wrfinput_d02_2015-06-10_17:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_17:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e005 wrfinput_d03_2015-06-10_17:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_17:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_17:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e006 wrfinput_d01_2015-06-10_17:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e006 wrfbdy_d01_2015-06-10_17:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_17:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e006 wrfinput_d02_2015-06-10_17:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_17:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e006 wrfinput_d03_2015-06-10_17:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_17:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_17:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e007 wrfinput_d01_2015-06-10_17:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e007 wrfbdy_d01_2015-06-10_17:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_17:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e007 wrfinput_d02_2015-06-10_17:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_17:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e007 wrfinput_d03_2015-06-10_17:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_17:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_17:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e008 wrfinput_d01_2015-06-10_17:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e008 wrfbdy_d01_2015-06-10_17:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_17:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e008 wrfinput_d02_2015-06-10_17:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_17:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e008 wrfinput_d03_2015-06-10_17:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_17:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_17:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e009 wrfinput_d01_2015-06-10_17:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e009 wrfbdy_d01_2015-06-10_17:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_17:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e009 wrfinput_d02_2015-06-10_17:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_17:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e009 wrfinput_d03_2015-06-10_17:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_17:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_17:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d01_2015-06-10_17:00:00.e010 wrfinput_d01_2015-06-10_17:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_bc/wrfbdy_d01_2015-06-10_17:00:00.e010 wrfbdy_d01_2015-06-10_17:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_17:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d02_2015-06-10_17:00:00.e010 wrfinput_d02_2015-06-10_17:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_17:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_met_ic/wrfinput_d03_2015-06-10_17:00:00.e010 wrfinput_d03_2015-06-10_17:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061017 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + LE_DATE=2015061018 + export LE_DATE + [[ 2015061017 -le 2015061018 ]] + echo 2015061017 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061017 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_17:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_17:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_17:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_17:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_17:00:00 wrfbiochemi_d01_2015-06-10_17:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_17:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_17:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_17:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11831 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_2793.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149709 + WRFCHEMI=wrfchemi_d02_2015-06-10_17:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_17:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_17:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_17:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_17:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_17:00:00 wrfchemi_d02_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_17:00:00 wrffirechemi_d02_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_17:00:00 wrfbiochemi_d02_2015-06-10_17:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_17:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_17:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_17:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11887 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_21486.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149710 + WRFCHEMI=wrfchemi_d03_2015-06-10_17:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_17:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_17:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_17:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_17:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_17:00:00 wrfchemi_d03_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_17:00:00 wrffirechemi_d03_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_17:00:00 wrfbiochemi_d03_2015-06-10_17:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_17:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_17:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_17:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11949 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_28867.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149711 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + echo 2015061018 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061017 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_18:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_18:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_18:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_17:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_17:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_18:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_18:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_18:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12178 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_24066.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149712 + WRFCHEMI=wrfchemi_d02_2015-06-10_18:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_18:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_18:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_17:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_17:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_18:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_18:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_18:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12235 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_5178.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149713 + WRFCHEMI=wrfchemi_d03_2015-06-10_18:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_18:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_18:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_17:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_17:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_18:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_18:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_18:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12423 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_18653.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149715 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_17:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_17:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_17:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 17 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=17 + export L_HH + D_DATE=2015061017 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=17 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=17 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=16 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=17 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061017.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061017.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 17 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=17 + export L_HH + D_DATE=2015061017 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=17 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=17 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=16 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=17 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061017.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061017.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/prepbufr_met_obs/obs_seq_prep_2015061017.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/prepbufr_met_obs/obs_seq_prep_2015061017.out ./obs_seq_MET_2015061017.out + FILE_LIST[1]=obs_seq_MET_2015061017.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/airnow_o3_obs/obs_seq_airnow_o3_2015061017.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/airnow_o3_obs/obs_seq_airnow_o3_2015061017.out ./obs_seq_AIR_O3_2015061017.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061017.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/tolnet_o3_obs/obs_seq_tolnet_o3_2015061017.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/tolnet_o3_obs/obs_seq_tolnet_o3_2015061017.out ./obs_seq_TOL_O3_2015061017.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061017.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061017.out\',\'obs_seq_AIR_O3_2015061017.out\',\'obs_seq_TOL_O3_2015061017.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=59400 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=63000 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 59400, last_obs_days = 151370, last_obs_seconds = 63000, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 6 56 13 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=59400 which is Gregorian day: 2015 Jun 10 16:30:00 Excluding observations after: day=151370, sec=63000 which is Gregorian day: 2015 Jun 10 17:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061017.out inserted number 20000 of 20127 -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 20127 Number of obs really inserted : 20127 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061017.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 20127 Number of obs to be inserted : 937 Number of obs really inserted : 937 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_TOL_O3_2015061017.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: TOLNET observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: TOLNET QC index -------------- Obs seq file # : 3 Number of obs in previous seq : 21064 Number of obs to be inserted : 605 Number of obs really inserted : 605 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 21669 Actual number of obs in the new seq file : 21669 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=59461 Gregorian day: 2015 Jun 10 16:31:01 Last obs time: day=151370, sec=63000 Gregorian day: 2015 Jun 10 17:30:00 Number of obs processed : 21669 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 53 obs RADIOSONDE_V_WIND_COMPONENT 53 obs RADIOSONDE_TEMPERATURE 52 obs RADIOSONDE_SPECIFIC_HUMIDITY 52 obs AIRCRAFT_U_WIND_COMPONENT 6 obs AIRCRAFT_V_WIND_COMPONENT 6 obs AIRCRAFT_TEMPERATURE 10 obs MARINE_SFC_U_WIND_COMPONENT 564 obs MARINE_SFC_V_WIND_COMPONENT 564 obs MARINE_SFC_TEMPERATURE 617 obs MARINE_SFC_SPECIFIC_HUMIDITY 157 obs LAND_SFC_U_WIND_COMPONENT 34 obs LAND_SFC_V_WIND_COMPONENT 34 obs LAND_SFC_TEMPERATURE 34 obs LAND_SFC_SPECIFIC_HUMIDITY 24 obs SAT_U_WIND_COMPONENT 8588 obs SAT_V_WIND_COMPONENT 8588 obs MARINE_SFC_ALTIMETER 657 obs LAND_SFC_ALTIMETER 34 obs AIRNOW_O3 937 obs TOLNET_O3 605 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 6 56 14 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061017.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_17:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_17:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_17:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_17:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_17:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_17:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59400, last_obs_days = 151370, last_obs_seconds = 63000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 17, 0, 0, last_bin_center = 2015, 6, 10, 17, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 59400, last_obs_days = 151370, last_obs_seconds = 63000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 59400, last_obs_days = 151370, last_obs_seconds = 63000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/combine_obs/obs_seq_comb_2015061017.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 61200 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149718 + mv obs_seq.new obs_seq_comb_filtered_2015061017.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061018 + export CYCLE_DATE + [[ 2015061018 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061018 + export DATE + cut -c1-4 + echo 2015061018 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061018 + YY=15 + export YY + cut -c5-6 + echo 2015061018 + MM=06 + export MM + cut -c7-8 + echo 2015061018 + DD=10 + export DD + cut -c9-10 + echo 2015061018 + HH=18 + export HH + DATE_SHORT=15061018 + export DATE_SHORT + FILE_DATE=2015-06-10_18:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 -1 + 2> /dev/null + PAST_DATE=2015061017 + export PAST_DATE + cut -c1-4 + echo 2015061017 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061017 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061017 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061017 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061017 + PAST_HH=17 + export PAST_HH + PAST_FILE_DATE=2015-06-10_17:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + NEXT_DATE=2015061019 + export NEXT_DATE + cut -c1-4 + echo 2015061019 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061019 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061019 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061019 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061019 + NEXT_HH=19 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_19:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=18 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 18 + 0 )) + [[ 18 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=18 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 18 + 0 )) + D_DATE=2015061018 + export D_DATE + echo 2015061018 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 64800 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=64800 + export SEC_GREG + echo 2015061019 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 68400 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=68400 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 -30m + 2> /dev/null + ASIM_MIN_DATE=201506101730 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506101730 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506101730 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506101730 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506101730 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506101730 + ASIM_MIN_HH=17 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +30m + 2> /dev/null + ASIM_MAX_DATE=201506101830 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506101830 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506101830 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506101830 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506101830 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506101830 + ASIM_MAX_HH=18 + export ASIM_MAX_HH + echo 201506101730 201506101730 + echo 201506101730 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 63000 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=63000 + export ASIM_MIN_SEC_GREG + echo 201506101830 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 66600 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=66600 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061018 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061018 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + END_DATE=2015061019 + export END_DATE + cut -c1-4 + echo 2015061018 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061018 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061018 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061018 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061018 + START_HOUR=18 + export START_HOUR + START_FILE_DATE=2015-06-10_18:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061019 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061019 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061019 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061019 + END_HOUR=19 + export END_HOUR + END_FILE_DATE=2015-06-10_19:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061017/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=18,18,18 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=19,19,19 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_17:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_18:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506101730 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 63000 + (( temp[1]=63000+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=63001 + export NL_FIRST_OBS_SECONDS + echo 201506101830 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 66600 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=66600 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061018 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=18 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=18 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=68400 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 -30m + 2> /dev/null + ASIM_DATE_MIN=201506101730 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +30m + 2> /dev/null + ASIM_DATE_MAX=201506101830 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506101730 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506101730 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506101730 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506101730 + ASIM_MN_HH=17 + export ASIM_MN_HH + cut -c1-4 + echo 201506101830 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506101830 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506101830 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506101830 + ASIM_MX_HH=18 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + E_DATE=2015061019 + export E_DATE + cut -c1-4 + echo 2015061019 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061019 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061019 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061019 + E_HH=19 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061018 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_END_DATE=2015061019 + export L_END_DATE + cut -c1-4 + echo 2015061018 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061018 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061018 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061018 + L_START_HOUR=18 + export L_START_HOUR + cut -c1-4 + echo 2015061019 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061019 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061019 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061019 + L_END_HOUR=19 + export L_END_HOUR + cut -c1-4 + echo 2015061018 + cut -c1-4 + echo 2015061018 + cut -c1-4 + echo 2015061018 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061018 + cut -c5-6 + echo 2015061018 + cut -c5-6 + echo 2015061018 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061018 + cut -c7-8 + echo 2015061018 + cut -c7-8 + echo 2015061018 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061018 + cut -c9-10 + echo 2015061018 + cut -c9-10 + echo 2015061018 + NL_START_HOUR=18,18,18 + export NL_START_HOUR + cut -c1-4 + echo 2015061019 + cut -c1-4 + echo 2015061019 + cut -c1-4 + echo 2015061019 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061019 + cut -c5-6 + echo 2015061019 + cut -c5-6 + echo 2015061019 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061019 + cut -c7-8 + echo 2015061019 + cut -c7-8 + echo 2015061019 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061019 + cut -c9-10 + echo 2015061019 + cut -c9-10 + echo 2015061019 + NL_END_HOUR=19,19,19 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_18:00:00\',\'2015-06-10_18:00:00\',\'2015-06-10_18:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_19:00:00\',\'2015-06-10_19:00:00\',\'2015-06-10_19:00:00\'' + export NL_END_DATE + P_DATE=2015061018 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + P_END_DATE=2015061019 + export P_END_DATE + [[ 2015061018 -le 2015061019 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_18:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_17:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_18:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14214 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17196.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149719 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14228 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23257.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149720 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14242 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2746.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149721 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14269 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11125.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149722 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14282 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9278.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149723 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14296 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7580.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149724 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14323 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18227.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149725 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14336 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11181.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149726 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14350 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21938.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149727 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14377 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23522.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149728 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14391 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30324.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149729 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14404 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8053.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149730 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14431 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26412.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149731 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14445 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16639.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149732 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14458 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16685.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149733 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14486 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31950.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149734 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14500 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31638.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149735 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14513 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25354.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149736 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14541 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27949.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149737 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14554 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5382.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149738 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14567 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31442.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149739 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14595 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6252.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149740 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14612 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29818.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149741 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14625 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13059.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149742 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14653 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18538.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149743 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14666 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10929.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149744 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14679 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23782.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149745 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14707 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7364.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149746 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14720 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17388.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149747 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_17:30:00', / &wrfvar22 time_window_max = '2015-06-10_18:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14733 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6388.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149748 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_18:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_18:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + P_DATE=2015061019 + export P_DATE + [[ 2015061019 -le 2015061019 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_19:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_18:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_19:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17196.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15038 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26136.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149750 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23257.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15052 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16546.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149751 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2746.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15066 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6772.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149752 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11125.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15094 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28061.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149753 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9278.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15107 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30881.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149754 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7580.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15120 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14770.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149755 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18227.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15148 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21859.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149756 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11181.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15162 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18505.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149757 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21938.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15175 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12316.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149758 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23522.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15203 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13964.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149759 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30324.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15216 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3987.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149760 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8053.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15230 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21573.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149761 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26412.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15258 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1766.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149762 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16639.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15271 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23635.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149763 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16685.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15285 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3976.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149764 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31950.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15312 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23339.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149765 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31638.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15326 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25150.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149766 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25354.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15340 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15022.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149767 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27949.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15367 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8701.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149768 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5382.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15381 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28044.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149769 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31442.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15394 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16162.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149770 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6252.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15422 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4151.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149771 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29818.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15436 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5730.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149772 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13059.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15449 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1893.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149773 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18538.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15477 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7445.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149774 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10929.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15491 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12098.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149775 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23782.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15504 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5164.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149776 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7364.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + [[ 18 -ge 00 ]] + [[ 18 -lt 06 ]] + [[ 18 -ge 06 ]] + [[ 18 -lt 12 ]] + [[ 18 -ge 12 ]] + [[ 18 -lt 18 ]] + [[ 18 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15532 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5715.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149777 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17388.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15545 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4894.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149778 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6388.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 18,18,18, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 19,19,19, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15559 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18205.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149779 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + P_DATE=2015061020 + export P_DATE + [[ 2015061020 -le 2015061019 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_END_DATE=2015061019 + export L_END_DATE + TRANDOM=23949 + [[ 2015061018 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + NEXT_L_DATE=2015061019 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_19:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16032 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5233.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149790 + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_END_DATE=2015061019 + export L_END_DATE + TRANDOM=23949 + [[ 2015061018 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + NEXT_L_DATE=2015061019 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_19:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16242 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_23126.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149791 + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_END_DATE=2015061019 + export L_END_DATE + TRANDOM=23949 + [[ 2015061018 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + NEXT_L_DATE=2015061019 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_19:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16479 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8013.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149792 + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_END_DATE=2015061019 + export L_END_DATE + TRANDOM=23949 + [[ 2015061018 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + NEXT_L_DATE=2015061019 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_19:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16693 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_24380.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149794 + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_END_DATE=2015061019 + export L_END_DATE + TRANDOM=23949 + [[ 2015061018 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + NEXT_L_DATE=2015061019 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_19:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16904 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11088.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149795 + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_END_DATE=2015061019 + export L_END_DATE + TRANDOM=23949 + [[ 2015061018 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + NEXT_L_DATE=2015061019 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_19:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17115 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_17597.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149796 + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_END_DATE=2015061019 + export L_END_DATE + TRANDOM=23949 + [[ 2015061018 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + NEXT_L_DATE=2015061019 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_19:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17326 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1464.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149797 + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_END_DATE=2015061019 + export L_END_DATE + TRANDOM=23949 + [[ 2015061018 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + NEXT_L_DATE=2015061019 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_19:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17541 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5722.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149798 + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_END_DATE=2015061019 + export L_END_DATE + TRANDOM=23949 + [[ 2015061018 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + NEXT_L_DATE=2015061019 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_19:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17754 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_10740.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149799 + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061017.out','obs_seq_AIR_O3_2015061017.out','obs_seq_TOL_O3_2015061017.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63001, last_obs_days = 151370, last_obs_seconds = 66600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_END_DATE=2015061019 + export L_END_DATE + TRANDOM=23949 + [[ 2015061018 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + NEXT_L_DATE=2015061019 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_19:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17965 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28768.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149800 + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -lt 2015061019 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfinput_d02_2015-06-10_18:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfinput_d03_2015-06-10_18:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfinput_d02_2015-06-10_18:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfinput_d03_2015-06-10_18:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + LE_DATE=2015061019 + export LE_DATE + [[ 2015061018 -le 2015061019 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_18:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_18:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_18:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_18:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061019 ]] + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_19:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_19:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_19:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_19:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_19:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061019 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061018 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149801 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=18 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_18:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_18:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfinput_d01_2015-06-10_18:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 ./. + mv wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e000 + mv wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_d01_2015-06-10_18:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18226 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_18:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.18226 rm -f tmp.18226 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e000 set files = ( wrfinput_d01_2015-06-10_18:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18294 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.18294 rm -f tmp.18294 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.18294 rm -f tmp.18294 if ( wrfinput_d01_2015-06-10_18:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00.e000 echo wrfinput_d01_2015-06-10_18:00:00.e000 wrfinput_d01_2015-06-10_18:00:00.e000 ln -s wrfinput_d01_2015-06-10_18:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_18:00:00.e000 wrfinput_d01_2015-06-10_18:00:00 + mv wrfbdy_d01_2015-06-10_18:00:00.e000 wrfbdy_d01_2015-06-10_18:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=18 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18379 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_18:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.18379 rm -f tmp.18379 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e001 set files = ( wrfinput_d01_2015-06-10_18:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18447 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.18447 rm -f tmp.18447 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.18447 rm -f tmp.18447 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18529 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_18:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.18529 rm -f tmp.18529 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e002 set files = ( wrfinput_d01_2015-06-10_18:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18596 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.18596 rm -f tmp.18596 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.18596 rm -f tmp.18596 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18678 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_18:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.18678 rm -f tmp.18678 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e003 set files = ( wrfinput_d01_2015-06-10_18:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18746 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.18746 rm -f tmp.18746 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.18746 rm -f tmp.18746 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18829 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_18:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.18829 rm -f tmp.18829 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e004 set files = ( wrfinput_d01_2015-06-10_18:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18900 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.18900 rm -f tmp.18900 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.18900 rm -f tmp.18900 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18982 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_18:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.18982 rm -f tmp.18982 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e005 set files = ( wrfinput_d01_2015-06-10_18:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19050 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.19050 rm -f tmp.19050 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.19050 rm -f tmp.19050 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19132 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_18:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.19132 rm -f tmp.19132 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e006 set files = ( wrfinput_d01_2015-06-10_18:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19200 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.19200 rm -f tmp.19200 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.19200 rm -f tmp.19200 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19282 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_18:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.19282 rm -f tmp.19282 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e007 set files = ( wrfinput_d01_2015-06-10_18:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19350 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.19350 rm -f tmp.19350 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.19350 rm -f tmp.19350 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19432 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_18:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.19432 rm -f tmp.19432 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e008 set files = ( wrfinput_d01_2015-06-10_18:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19499 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.19499 rm -f tmp.19499 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.19499 rm -f tmp.19499 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19581 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_18:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.19581 rm -f tmp.19581 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e009 set files = ( wrfinput_d01_2015-06-10_18:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19649 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.19649 rm -f tmp.19649 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.19649 rm -f tmp.19649 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19731 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_18:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.19731 rm -f tmp.19731 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e010 set files = ( wrfinput_d01_2015-06-10_18:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19798 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.19798 rm -f tmp.19798 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_d01_2015-06-10_18:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.19798 rm -f tmp.19798 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_d01_2015-06-10_18:00:00.e010 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_d01_2015-06-10_18:00:00.e010 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_d01_2015-06-10_18:00:00.e010 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149802 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=18 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_18:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfinput_d02_2015-06-10_18:00:00 ./. + mv wrfinput_d02_2015-06-10_18:00:00 wrfinput_d02_2015-06-10_18:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.19914 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_18:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.19914 rm -f tmp.19914 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_18:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_18:00:00.e000 set files = ( wrfinput_d02_2015-06-10_18:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_18:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_18:00:00.e000 wrfinput_d02_2015-06-10_18:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=18 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_18:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.19988 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_18:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.19988 rm -f tmp.19988 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_18:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_18:00:00.e001 set files = ( wrfinput_d02_2015-06-10_18:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_18:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_18:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20060 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_18:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.20060 rm -f tmp.20060 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_18:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_18:00:00.e002 set files = ( wrfinput_d02_2015-06-10_18:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_18:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_18:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20132 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_18:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.20132 rm -f tmp.20132 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_18:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_18:00:00.e003 set files = ( wrfinput_d02_2015-06-10_18:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_18:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_18:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20205 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_18:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.20205 rm -f tmp.20205 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_18:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_18:00:00.e004 set files = ( wrfinput_d02_2015-06-10_18:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_18:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_18:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20278 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_18:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.20278 rm -f tmp.20278 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_18:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_18:00:00.e005 set files = ( wrfinput_d02_2015-06-10_18:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_18:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_18:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20350 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_18:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.20350 rm -f tmp.20350 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_18:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_18:00:00.e006 set files = ( wrfinput_d02_2015-06-10_18:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_18:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_18:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20422 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_18:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.20422 rm -f tmp.20422 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_18:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_18:00:00.e007 set files = ( wrfinput_d02_2015-06-10_18:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_18:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_18:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20495 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_18:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.20495 rm -f tmp.20495 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_18:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_18:00:00.e008 set files = ( wrfinput_d02_2015-06-10_18:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_18:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_18:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20567 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_18:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.20567 rm -f tmp.20567 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_18:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_18:00:00.e009 set files = ( wrfinput_d02_2015-06-10_18:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_18:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_18:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20639 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_18:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.20639 rm -f tmp.20639 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_18:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_18:00:00.e010 set files = ( wrfinput_d02_2015-06-10_18:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_18:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_18:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_18:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_18:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149803 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=18 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_18:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfinput_d03_2015-06-10_18:00:00 ./. + mv wrfinput_d03_2015-06-10_18:00:00 wrfinput_d03_2015-06-10_18:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.20748 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_18:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.20748 rm -f tmp.20748 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_18:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_18:00:00.e000 set files = ( wrfinput_d03_2015-06-10_18:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_18:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_18:00:00.e000 wrfinput_d03_2015-06-10_18:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=18 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_18:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.20822 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_18:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.20822 rm -f tmp.20822 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_18:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_18:00:00.e001 set files = ( wrfinput_d03_2015-06-10_18:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_18:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_18:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.20894 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_18:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.20894 rm -f tmp.20894 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_18:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_18:00:00.e002 set files = ( wrfinput_d03_2015-06-10_18:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_18:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_18:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.20966 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_18:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.20966 rm -f tmp.20966 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_18:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_18:00:00.e003 set files = ( wrfinput_d03_2015-06-10_18:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_18:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_18:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21038 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_18:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.21038 rm -f tmp.21038 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_18:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_18:00:00.e004 set files = ( wrfinput_d03_2015-06-10_18:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_18:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_18:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21173 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_18:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.21173 rm -f tmp.21173 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_18:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_18:00:00.e005 set files = ( wrfinput_d03_2015-06-10_18:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_18:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_18:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21308 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_18:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.21308 rm -f tmp.21308 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_18:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_18:00:00.e006 set files = ( wrfinput_d03_2015-06-10_18:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_18:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_18:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21380 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_18:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.21380 rm -f tmp.21380 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_18:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_18:00:00.e007 set files = ( wrfinput_d03_2015-06-10_18:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_18:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_18:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21452 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_18:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.21452 rm -f tmp.21452 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_18:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_18:00:00.e008 set files = ( wrfinput_d03_2015-06-10_18:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_18:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_18:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21524 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_18:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.21524 rm -f tmp.21524 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_18:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_18:00:00.e009 set files = ( wrfinput_d03_2015-06-10_18:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_18:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_18:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21596 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_18:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21596 rm -f tmp.21596 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_18:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_18:00:00.e010 set files = ( wrfinput_d03_2015-06-10_18:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_18:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_18:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_18:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_18:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_d01_2015-06-10_18:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_18:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfinput_d02_2015-06-10_18:00:00 wrfinput_d02_2015-06-10_18:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_18:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/real/wrfinput_d03_2015-06-10_18:00:00 wrfinput_d03_2015-06-10_18:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e001 wrfbdy_d01_2015-06-10_18:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_18:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e001 wrfinput_d02_2015-06-10_18:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_18:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e001 wrfinput_d03_2015-06-10_18:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e002 wrfbdy_d01_2015-06-10_18:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_18:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e002 wrfinput_d02_2015-06-10_18:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_18:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e002 wrfinput_d03_2015-06-10_18:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e003 wrfbdy_d01_2015-06-10_18:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_18:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e003 wrfinput_d02_2015-06-10_18:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_18:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e003 wrfinput_d03_2015-06-10_18:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e004 wrfbdy_d01_2015-06-10_18:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_18:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e004 wrfinput_d02_2015-06-10_18:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_18:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e004 wrfinput_d03_2015-06-10_18:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e005 wrfbdy_d01_2015-06-10_18:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_18:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e005 wrfinput_d02_2015-06-10_18:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_18:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e005 wrfinput_d03_2015-06-10_18:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e006 wrfbdy_d01_2015-06-10_18:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_18:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e006 wrfinput_d02_2015-06-10_18:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_18:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e006 wrfinput_d03_2015-06-10_18:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e007 wrfbdy_d01_2015-06-10_18:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_18:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e007 wrfinput_d02_2015-06-10_18:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_18:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e007 wrfinput_d03_2015-06-10_18:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e008 wrfbdy_d01_2015-06-10_18:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_18:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e008 wrfinput_d02_2015-06-10_18:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_18:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e008 wrfinput_d03_2015-06-10_18:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_d01_2015-06-10_18:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e009 wrfbdy_d01_2015-06-10_18:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_18:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e009 wrfinput_d02_2015-06-10_18:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_18:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e009 wrfinput_d03_2015-06-10_18:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e010 wrfinput_d01_2015-06-10_18:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e010 wrfbdy_d01_2015-06-10_18:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_18:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d02_2015-06-10_18:00:00.e010 wrfinput_d02_2015-06-10_18:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_18:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_met_ic/wrfinput_d03_2015-06-10_18:00:00.e010 wrfinput_d03_2015-06-10_18:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + LE_DATE=2015061019 + export LE_DATE + [[ 2015061018 -le 2015061019 ]] + echo 2015061018 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061018 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_18:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_18:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_18:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_18:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_18:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_18:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_18:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22080 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_14947.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149804 + WRFCHEMI=wrfchemi_d02_2015-06-10_18:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_18:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_18:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_18:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_18:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_18:00:00 wrfchemi_d02_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_18:00:00 wrffirechemi_d02_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_18:00:00 wrfbiochemi_d02_2015-06-10_18:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_18:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_18:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_18:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22131 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_3974.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149805 + WRFCHEMI=wrfchemi_d03_2015-06-10_18:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_18:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_18:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_18:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_18:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_18:00:00 wrfchemi_d03_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_18:00:00 wrffirechemi_d03_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_18:00:00 wrfbiochemi_d03_2015-06-10_18:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_18:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_18:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_18:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22318 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_5894.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149806 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061019 ]] + echo 2015061019 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061018 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_19:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_19:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_19:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_18:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_19:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_19:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_19:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22550 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_12384.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149811 + WRFCHEMI=wrfchemi_d02_2015-06-10_19:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_19:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_19:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_18:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_18:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_19:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_19:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_19:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22601 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_22288.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149816 + WRFCHEMI=wrfchemi_d03_2015-06-10_19:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_19:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_19:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_18:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_18:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_19:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_19:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_19:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22666 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_27529.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149819 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061019 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_18:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_18:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_18:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 18 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=18 + export L_HH + D_DATE=2015061018 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=18 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=18 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=17 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=18 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061018.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061018.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 18 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=18 + export L_HH + D_DATE=2015061018 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=18 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=18 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=17 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=18 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061018.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061018.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/prepbufr_met_obs/obs_seq_prep_2015061018.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/prepbufr_met_obs/obs_seq_prep_2015061018.out ./obs_seq_MET_2015061018.out + FILE_LIST[1]=obs_seq_MET_2015061018.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/airnow_o3_obs/obs_seq_airnow_o3_2015061018.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/airnow_o3_obs/obs_seq_airnow_o3_2015061018.out ./obs_seq_AIR_O3_2015061018.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061018.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/tolnet_o3_obs/obs_seq_tolnet_o3_2015061018.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/tolnet_o3_obs/obs_seq_tolnet_o3_2015061018.out ./obs_seq_TOL_O3_2015061018.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061018.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061018.out\',\'obs_seq_AIR_O3_2015061018.out\',\'obs_seq_TOL_O3_2015061018.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=63000 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=66600 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 63000, last_obs_days = 151370, last_obs_seconds = 66600, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 7 17 29 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=63000 which is Gregorian day: 2015 Jun 10 17:30:00 Excluding observations after: day=151370, sec=66600 which is Gregorian day: 2015 Jun 10 18:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061018.out inserted number 20000 of 22978 -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 22978 Number of obs really inserted : 22978 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061018.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 22978 Number of obs to be inserted : 943 Number of obs really inserted : 943 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_TOL_O3_2015061018.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: TOLNET observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: TOLNET QC index -------------- Obs seq file # : 3 Number of obs in previous seq : 23921 Number of obs to be inserted : 605 Number of obs really inserted : 605 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 24526 Actual number of obs in the new seq file : 24526 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=63061 Gregorian day: 2015 Jun 10 17:31:01 Last obs time: day=151370, sec=66600 Gregorian day: 2015 Jun 10 18:30:00 Number of obs processed : 24526 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 195 obs RADIOSONDE_V_WIND_COMPONENT 195 obs RADIOSONDE_TEMPERATURE 236 obs RADIOSONDE_SPECIFIC_HUMIDITY 224 obs AIRCRAFT_U_WIND_COMPONENT 6 obs AIRCRAFT_V_WIND_COMPONENT 6 obs AIRCRAFT_TEMPERATURE 10 obs MARINE_SFC_U_WIND_COMPONENT 598 obs MARINE_SFC_V_WIND_COMPONENT 598 obs MARINE_SFC_TEMPERATURE 650 obs MARINE_SFC_SPECIFIC_HUMIDITY 191 obs LAND_SFC_U_WIND_COMPONENT 468 obs LAND_SFC_V_WIND_COMPONENT 468 obs LAND_SFC_TEMPERATURE 479 obs LAND_SFC_SPECIFIC_HUMIDITY 453 obs SAT_U_WIND_COMPONENT 8513 obs SAT_V_WIND_COMPONENT 8513 obs RADIOSONDE_SURFACE_ALTIMETER 3 obs MARINE_SFC_ALTIMETER 691 obs LAND_SFC_ALTIMETER 481 obs AIRNOW_O3 943 obs TOLNET_O3 605 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 7 17 30 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061018.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_18:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_18:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_18:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_18:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63000, last_obs_days = 151370, last_obs_seconds = 66600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 63000, last_obs_days = 151370, last_obs_seconds = 66600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 63000, last_obs_days = 151370, last_obs_seconds = 66600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 68400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/combine_obs/obs_seq_comb_2015061018.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 64800 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149821 + mv obs_seq.new obs_seq_comb_filtered_2015061018.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061019 + export CYCLE_DATE + [[ 2015061019 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061019 + export DATE + echo 2015061019 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061019 + YY=15 + export YY + cut -c5-6 + echo 2015061019 + MM=06 + export MM + cut -c7-8 + echo 2015061019 + DD=10 + export DD + cut -c9-10 + echo 2015061019 + HH=19 + export HH + DATE_SHORT=15061019 + export DATE_SHORT + FILE_DATE=2015-06-10_19:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 -1 + 2> /dev/null + PAST_DATE=2015061018 + export PAST_DATE + cut -c1-4 + echo 2015061018 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061018 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061018 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061018 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061018 + PAST_HH=18 + export PAST_HH + PAST_FILE_DATE=2015-06-10_18:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +1 + 2> /dev/null + NEXT_DATE=2015061020 + export NEXT_DATE + cut -c1-4 + echo 2015061020 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061020 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061020 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061020 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061020 + NEXT_HH=20 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_20:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=19 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 19 + 0 )) + [[ 19 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=19 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 19 + 0 )) + D_DATE=2015061019 + export D_DATE + echo 2015061019 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 68400 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=68400 + export SEC_GREG + echo 2015061020 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 72000 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=72000 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 -30m + 2> /dev/null + ASIM_MIN_DATE=201506101830 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506101830 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506101830 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506101830 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506101830 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506101830 + ASIM_MIN_HH=18 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +30m + 2> /dev/null + ASIM_MAX_DATE=201506101930 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506101930 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506101930 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506101930 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506101930 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506101930 + ASIM_MAX_HH=19 + export ASIM_MAX_HH + echo 201506101830 201506101830 + echo 201506101830 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 66600 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=66600 + export ASIM_MIN_SEC_GREG + echo 201506101930 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 70200 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=70200 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061019 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061019 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + END_DATE=2015061020 + export END_DATE + cut -c1-4 + echo 2015061019 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061019 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061019 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061019 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061019 + START_HOUR=19 + export START_HOUR + START_FILE_DATE=2015-06-10_19:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061020 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061020 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061020 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061020 + END_HOUR=20 + export END_HOUR + END_FILE_DATE=2015-06-10_20:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061018/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=19,19,19 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=20,20,20 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_18:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_19:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506101830 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 66600 + (( temp[1]=66600+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=66601 + export NL_FIRST_OBS_SECONDS + echo 201506101930 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 70200 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=70200 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061019 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=19 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=19 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=72000 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 -30m + 2> /dev/null + ASIM_DATE_MIN=201506101830 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +30m + 2> /dev/null + ASIM_DATE_MAX=201506101930 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506101830 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506101830 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506101830 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506101830 + ASIM_MN_HH=18 + export ASIM_MN_HH + cut -c1-4 + echo 201506101930 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506101930 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506101930 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506101930 + ASIM_MX_HH=19 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + E_DATE=2015061020 + export E_DATE + cut -c1-4 + echo 2015061020 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061020 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061020 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061020 + E_HH=20 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061019 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_END_DATE=2015061020 + export L_END_DATE + cut -c1-4 + echo 2015061019 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061019 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061019 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061019 + L_START_HOUR=19 + export L_START_HOUR + cut -c1-4 + echo 2015061020 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061020 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061020 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061020 + L_END_HOUR=20 + export L_END_HOUR + cut -c1-4 + echo 2015061019 + cut -c1-4 + echo 2015061019 + cut -c1-4 + echo 2015061019 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061019 + cut -c5-6 + echo 2015061019 + cut -c5-6 + echo 2015061019 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061019 + cut -c7-8 + echo 2015061019 + cut -c7-8 + echo 2015061019 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061019 + cut -c9-10 + echo 2015061019 + cut -c9-10 + echo 2015061019 + NL_START_HOUR=19,19,19 + export NL_START_HOUR + cut -c1-4 + echo 2015061020 + cut -c1-4 + echo 2015061020 + cut -c1-4 + echo 2015061020 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061020 + cut -c5-6 + echo 2015061020 + cut -c5-6 + echo 2015061020 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061020 + cut -c7-8 + echo 2015061020 + cut -c7-8 + echo 2015061020 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061020 + cut -c9-10 + echo 2015061020 + cut -c9-10 + echo 2015061020 + NL_END_HOUR=20,20,20 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_19:00:00\',\'2015-06-10_19:00:00\',\'2015-06-10_19:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_20:00:00\',\'2015-06-10_20:00:00\',\'2015-06-10_20:00:00\'' + export NL_END_DATE + P_DATE=2015061019 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + P_END_DATE=2015061020 + export P_END_DATE + [[ 2015061019 -le 2015061020 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_19:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_18:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_19:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24575 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11362.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149822 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24589 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26953.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149823 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24603 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20326.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149824 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24631 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17838.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149825 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24644 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16536.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149826 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24659 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24233.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149827 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24687 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15478.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149828 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24700 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10628.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149829 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24714 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5775.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149830 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24745 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27265.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149831 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24758 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19150.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149832 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24772 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14908.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149833 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24799 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14466.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149834 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24812 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4438.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149835 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24826 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11568.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149836 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24853 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27664.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149837 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24867 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30439.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149838 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24880 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16754.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149839 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24907 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16122.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149840 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24921 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22416.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149841 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24934 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30106.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149842 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24961 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14002.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149843 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24975 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24376.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149844 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24988 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5074.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149845 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25015 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31559.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149846 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25030 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8914.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149847 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25043 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29950.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149848 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25070 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29700.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149849 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25084 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7151.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149850 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_19:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_19:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:30:00', / &wrfvar22 time_window_max = '2015-06-10_19:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_19:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25097 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11361.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149851 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_19:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_19:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_19:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + P_DATE=2015061020 + export P_DATE + [[ 2015061020 -le 2015061020 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_20:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_19:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_20:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11362.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25446 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8320.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149852 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26953.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25460 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18707.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149853 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20326.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25474 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28618.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149854 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17838.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25502 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3671.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149855 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16536.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25515 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24996.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149856 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24233.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25529 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10749.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149857 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15478.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25556 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21209.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149858 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10628.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25570 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31595.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149859 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5775.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25583 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9852.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149860 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27265.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25611 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28666.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149861 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19150.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25624 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6923.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149862 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14908.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25638 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17566.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149863 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14466.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25666 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21117.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149864 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4438.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25679 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1809.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149865 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11568.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25693 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_918.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149866 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27664.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25720 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2854.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149867 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30439.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25734 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5596.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149868 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16754.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25747 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9469.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149869 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16122.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25775 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1130.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149870 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22416.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25788 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28631.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149871 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30106.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25802 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20844.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149872 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14002.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25829 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25861.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149873 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24376.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25843 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10994.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149874 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5074.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25856 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17848.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149875 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31559.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25884 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18818.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149876 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8914.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25897 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2131.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149877 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29950.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25911 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19491.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149878 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29700.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -f hhddmmyycc + NL_SEED_ARRAY1=1910061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061019 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + [[ 19 -ge 00 ]] + [[ 19 -lt 06 ]] + [[ 19 -ge 06 ]] + [[ 19 -lt 12 ]] + [[ 19 -ge 12 ]] + [[ 19 -lt 18 ]] + [[ 19 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25939 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3105.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149879 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7151.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25952 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4837.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149880 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11361.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1910061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 19,19,19, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 20,20,20, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25966 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25428.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149881 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + P_DATE=2015061021 + export P_DATE + [[ 2015061021 -le 2015061020 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 19, 0, 0, last_bin_center = 2015, 6, 10, 19, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061019 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_END_DATE=2015061020 + export L_END_DATE + TRANDOM=23949 + [[ 2015061019 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + NEXT_L_DATE=2015061020 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_20:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26465 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7807.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149882 + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_19:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 19, 0, 0, last_bin_center = 2015, 6, 10, 19, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061019 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_END_DATE=2015061020 + export L_END_DATE + TRANDOM=23949 + [[ 2015061019 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + NEXT_L_DATE=2015061020 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_20:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26676 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28373.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149883 + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_19:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 19, 0, 0, last_bin_center = 2015, 6, 10, 19, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061019 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_END_DATE=2015061020 + export L_END_DATE + TRANDOM=23949 + [[ 2015061019 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + NEXT_L_DATE=2015061020 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_20:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26887 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13366.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149884 + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_19:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 19, 0, 0, last_bin_center = 2015, 6, 10, 19, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061019 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_END_DATE=2015061020 + export L_END_DATE + TRANDOM=23949 + [[ 2015061019 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + NEXT_L_DATE=2015061020 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_20:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27098 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30530.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149885 + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_19:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 19, 0, 0, last_bin_center = 2015, 6, 10, 19, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061019 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_END_DATE=2015061020 + export L_END_DATE + TRANDOM=23949 + [[ 2015061019 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + NEXT_L_DATE=2015061020 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_20:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27313 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32212.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149886 + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_19:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 19, 0, 0, last_bin_center = 2015, 6, 10, 19, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061019 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_END_DATE=2015061020 + export L_END_DATE + TRANDOM=23949 + [[ 2015061019 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + NEXT_L_DATE=2015061020 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_20:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27526 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6541.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149887 + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_19:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 19, 0, 0, last_bin_center = 2015, 6, 10, 19, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061019 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_END_DATE=2015061020 + export L_END_DATE + TRANDOM=23949 + [[ 2015061019 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + NEXT_L_DATE=2015061020 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_20:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27737 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13749.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149888 + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_19:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 19, 0, 0, last_bin_center = 2015, 6, 10, 19, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061019 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_END_DATE=2015061020 + export L_END_DATE + TRANDOM=23949 + [[ 2015061019 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + NEXT_L_DATE=2015061020 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_20:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27948 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_25446.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149889 + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_19:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 19, 0, 0, last_bin_center = 2015, 6, 10, 19, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061019 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_END_DATE=2015061020 + export L_END_DATE + TRANDOM=23949 + [[ 2015061019 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + NEXT_L_DATE=2015061020 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_20:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28161 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28835.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149890 + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_19:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 19, 0, 0, last_bin_center = 2015, 6, 10, 19, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66601, last_obs_days = 151370, last_obs_seconds = 70200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061019 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_END_DATE=2015061020 + export L_END_DATE + TRANDOM=23949 + [[ 2015061019 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + NEXT_L_DATE=2015061020 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_20:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28376 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27687.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149891 + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -lt 2015061020 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_19:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_19:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfinput_d02_2015-06-10_19:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfinput_d03_2015-06-10_19:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfinput_d02_2015-06-10_19:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfinput_d03_2015-06-10_19:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi + L_DATE=2015061019 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + LE_DATE=2015061020 + export LE_DATE + [[ 2015061019 -le 2015061020 ]] + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_19:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_19:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_19:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_19:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_19:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061020 ]] + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_20:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_20:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_20:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_20:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_20:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061020 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061019 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149892 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=19 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_19:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_19:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfinput_d01_2015-06-10_19:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 ./. + mv wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e000 + mv wrfbdy_d01_2015-06-10_19:00:00 wrfbdy_d01_2015-06-10_19:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28637 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_19:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.28637 rm -f tmp.28637 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_19:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_19:00:00.e000 set files = ( wrfinput_d01_2015-06-10_19:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_19:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28704 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_19:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.28704 rm -f tmp.28704 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_19:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_19:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_19:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_19:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.28704 rm -f tmp.28704 if ( wrfinput_d01_2015-06-10_19:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_19:00:00.e000 echo wrfinput_d01_2015-06-10_19:00:00.e000 wrfinput_d01_2015-06-10_19:00:00.e000 ln -s wrfinput_d01_2015-06-10_19:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_19:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_19:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_19:00:00.e000 wrfinput_d01_2015-06-10_19:00:00 + mv wrfbdy_d01_2015-06-10_19:00:00.e000 wrfbdy_d01_2015-06-10_19:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=19 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_19:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_19:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28789 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_19:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.28789 rm -f tmp.28789 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_19:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_19:00:00.e001 set files = ( wrfinput_d01_2015-06-10_19:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28858 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_19:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.28858 rm -f tmp.28858 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_19:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_19:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_19:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.28858 rm -f tmp.28858 if ( wrfinput_d01_2015-06-10_19:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 echo wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 ln -s wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_19:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_19:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_19:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_19:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28941 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_19:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.28941 rm -f tmp.28941 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_19:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_19:00:00.e002 set files = ( wrfinput_d01_2015-06-10_19:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29009 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_19:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.29009 rm -f tmp.29009 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_19:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_19:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_19:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.29009 rm -f tmp.29009 if ( wrfinput_d01_2015-06-10_19:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 echo wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 ln -s wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_19:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_19:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_19:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_19:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29091 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_19:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.29091 rm -f tmp.29091 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_19:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_19:00:00.e003 set files = ( wrfinput_d01_2015-06-10_19:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29158 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_19:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.29158 rm -f tmp.29158 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_19:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_19:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_19:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.29158 rm -f tmp.29158 if ( wrfinput_d01_2015-06-10_19:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 echo wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 ln -s wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_19:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_19:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_19:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_19:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29240 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_19:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.29240 rm -f tmp.29240 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_19:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_19:00:00.e004 set files = ( wrfinput_d01_2015-06-10_19:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29308 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_19:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.29308 rm -f tmp.29308 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_19:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_19:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_19:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.29308 rm -f tmp.29308 if ( wrfinput_d01_2015-06-10_19:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 echo wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 ln -s wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_19:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_19:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_19:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_19:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29390 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_19:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.29390 rm -f tmp.29390 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_19:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_19:00:00.e005 set files = ( wrfinput_d01_2015-06-10_19:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29457 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_19:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.29457 rm -f tmp.29457 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_19:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_19:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_19:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.29457 rm -f tmp.29457 if ( wrfinput_d01_2015-06-10_19:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 echo wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 ln -s wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_19:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_19:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_19:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_19:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29539 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_19:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.29539 rm -f tmp.29539 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_19:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_19:00:00.e006 set files = ( wrfinput_d01_2015-06-10_19:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29608 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_19:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.29608 rm -f tmp.29608 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_19:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_19:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_19:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.29608 rm -f tmp.29608 if ( wrfinput_d01_2015-06-10_19:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 echo wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 ln -s wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_19:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_19:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_19:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_19:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29690 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_19:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.29690 rm -f tmp.29690 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_19:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_19:00:00.e007 set files = ( wrfinput_d01_2015-06-10_19:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29758 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_19:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.29758 rm -f tmp.29758 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_19:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_19:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_19:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.29758 rm -f tmp.29758 if ( wrfinput_d01_2015-06-10_19:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 echo wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 ln -s wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_19:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_19:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_19:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_19:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29840 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_19:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.29840 rm -f tmp.29840 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_19:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_19:00:00.e008 set files = ( wrfinput_d01_2015-06-10_19:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_19:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29907 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_19:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.29907 rm -f tmp.29907 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_19:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_19:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_19:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01_2015-06-10_19:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.29907 rm -f tmp.29907 if ( wrfinput_d01_2015-06-10_19:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01_2015-06-10_19:00:00.e008 echo wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01_2015-06-10_19:00:00.e008 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01_2015-06-10_19:00:00.e008 ln -s wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_19:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_19:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_19:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_19:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.29989 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_19:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.29989 rm -f tmp.29989 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_19:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_19:00:00.e009 set files = ( wrfinput_d01_2015-06-10_19:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_19:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30057 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_19:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.30057 rm -f tmp.30057 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_19:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_19:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_19:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01_2015-06-10_19:00:00.e008 wrfinput_d01_2015-06-10_19:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.30057 rm -f tmp.30057 if ( wrfinput_d01_2015-06-10_19:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01_2015-06-10_19:00:00.e008 wrfinput_d01_2015-06-10_19:00:00.e009 echo wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01_2015-06-10_19:00:00.e008 wrfinput_d01_2015-06-10_19:00:00.e009 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01_2015-06-10_19:00:00.e008 wrfinput_d01_2015-06-10_19:00:00.e009 ln -s wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_19:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_19:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_19:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_19:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30139 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_19:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.30139 rm -f tmp.30139 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_19:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_19:00:00.e010 set files = ( wrfinput_d01_2015-06-10_19:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_19:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_19:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_19:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_19:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.30206 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_19:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.30206 rm -f tmp.30206 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_19:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_19:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_19:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01_2015-06-10_19:00:00.e008 wrfinput_d01_2015-06-10_19:00:00.e009 wrfinput_d01_2015-06-10_19:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.30206 rm -f tmp.30206 if ( wrfinput_d01_2015-06-10_19:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01_2015-06-10_19:00:00.e008 wrfinput_d01_2015-06-10_19:00:00.e009 wrfinput_d01_2015-06-10_19:00:00.e010 echo wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01_2015-06-10_19:00:00.e008 wrfinput_d01_2015-06-10_19:00:00.e009 wrfinput_d01_2015-06-10_19:00:00.e010 wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01_2015-06-10_19:00:00.e008 wrfinput_d01_2015-06-10_19:00:00.e009 wrfinput_d01_2015-06-10_19:00:00.e010 ln -s wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_19:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_19:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_19:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_19:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_19:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149897 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=19 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_19:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfinput_d02_2015-06-10_19:00:00 ./. + mv wrfinput_d02_2015-06-10_19:00:00 wrfinput_d02_2015-06-10_19:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30330 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_19:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.30330 rm -f tmp.30330 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_19:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_19:00:00.e000 set files = ( wrfinput_d02_2015-06-10_19:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_19:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_19:00:00.e000 wrfinput_d02_2015-06-10_19:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=19 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_19:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30404 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_19:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.30404 rm -f tmp.30404 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_19:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_19:00:00.e001 set files = ( wrfinput_d02_2015-06-10_19:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_19:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_19:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30476 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_19:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.30476 rm -f tmp.30476 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_19:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_19:00:00.e002 set files = ( wrfinput_d02_2015-06-10_19:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_19:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_19:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30549 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_19:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.30549 rm -f tmp.30549 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_19:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_19:00:00.e003 set files = ( wrfinput_d02_2015-06-10_19:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_19:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_19:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30621 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_19:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.30621 rm -f tmp.30621 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_19:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_19:00:00.e004 set files = ( wrfinput_d02_2015-06-10_19:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_19:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_19:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30693 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_19:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.30693 rm -f tmp.30693 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_19:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_19:00:00.e005 set files = ( wrfinput_d02_2015-06-10_19:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_19:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_19:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30766 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_19:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.30766 rm -f tmp.30766 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_19:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_19:00:00.e006 set files = ( wrfinput_d02_2015-06-10_19:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_19:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_19:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30838 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_19:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.30838 rm -f tmp.30838 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_19:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_19:00:00.e007 set files = ( wrfinput_d02_2015-06-10_19:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_19:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_19:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30910 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_19:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.30910 rm -f tmp.30910 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_19:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_19:00:00.e008 set files = ( wrfinput_d02_2015-06-10_19:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_19:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_19:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.30982 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_19:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.30982 rm -f tmp.30982 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_19:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_19:00:00.e009 set files = ( wrfinput_d02_2015-06-10_19:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_19:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_19:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.31056 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_19:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.31056 rm -f tmp.31056 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_19:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_19:00:00.e010 set files = ( wrfinput_d02_2015-06-10_19:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_19:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_19:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_19:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_19:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149904 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=19 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_19:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfinput_d03_2015-06-10_19:00:00 ./. + mv wrfinput_d03_2015-06-10_19:00:00 wrfinput_d03_2015-06-10_19:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31165 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_19:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.31165 rm -f tmp.31165 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_19:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_19:00:00.e000 set files = ( wrfinput_d03_2015-06-10_19:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_19:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_19:00:00.e000 wrfinput_d03_2015-06-10_19:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=19 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_19:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31239 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_19:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.31239 rm -f tmp.31239 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_19:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_19:00:00.e001 set files = ( wrfinput_d03_2015-06-10_19:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_19:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_19:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31312 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_19:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.31312 rm -f tmp.31312 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_19:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_19:00:00.e002 set files = ( wrfinput_d03_2015-06-10_19:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_19:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_19:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31384 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_19:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.31384 rm -f tmp.31384 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_19:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_19:00:00.e003 set files = ( wrfinput_d03_2015-06-10_19:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_19:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_19:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31456 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_19:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.31456 rm -f tmp.31456 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_19:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_19:00:00.e004 set files = ( wrfinput_d03_2015-06-10_19:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_19:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_19:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31529 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_19:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.31529 rm -f tmp.31529 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_19:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_19:00:00.e005 set files = ( wrfinput_d03_2015-06-10_19:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_19:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_19:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31601 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_19:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.31601 rm -f tmp.31601 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_19:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_19:00:00.e006 set files = ( wrfinput_d03_2015-06-10_19:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_19:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_19:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31674 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_19:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.31674 rm -f tmp.31674 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_19:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_19:00:00.e007 set files = ( wrfinput_d03_2015-06-10_19:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_19:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_19:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31747 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_19:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.31747 rm -f tmp.31747 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_19:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_19:00:00.e008 set files = ( wrfinput_d03_2015-06-10_19:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_19:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_19:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.31909 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_19:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.31909 rm -f tmp.31909 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_19:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_19:00:00.e009 set files = ( wrfinput_d03_2015-06-10_19:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_19:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_19:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.32017 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_19:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.32017 rm -f tmp.32017 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_19:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_19:00:00.e010 set files = ( wrfinput_d03_2015-06-10_19:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_19:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_19:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_19:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_19:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_19:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_19:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01_2015-06-10_19:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfbdy_d01_2015-06-10_19:00:00 wrfbdy_d01_2015-06-10_19:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_19:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfinput_d02_2015-06-10_19:00:00 wrfinput_d02_2015-06-10_19:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_19:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/real/wrfinput_d03_2015-06-10_19:00:00 wrfinput_d03_2015-06-10_19:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_19:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_19:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01_2015-06-10_19:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e001 wrfbdy_d01_2015-06-10_19:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_19:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e001 wrfinput_d02_2015-06-10_19:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_19:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e001 wrfinput_d03_2015-06-10_19:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_19:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_19:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e002 wrfinput_d01_2015-06-10_19:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e002 wrfbdy_d01_2015-06-10_19:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_19:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e002 wrfinput_d02_2015-06-10_19:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_19:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e002 wrfinput_d03_2015-06-10_19:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_19:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_19:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e003 wrfinput_d01_2015-06-10_19:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e003 wrfbdy_d01_2015-06-10_19:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_19:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e003 wrfinput_d02_2015-06-10_19:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_19:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e003 wrfinput_d03_2015-06-10_19:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_19:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_19:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e004 wrfinput_d01_2015-06-10_19:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e004 wrfbdy_d01_2015-06-10_19:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_19:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e004 wrfinput_d02_2015-06-10_19:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_19:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e004 wrfinput_d03_2015-06-10_19:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_19:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_19:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e005 wrfinput_d01_2015-06-10_19:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e005 wrfbdy_d01_2015-06-10_19:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_19:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e005 wrfinput_d02_2015-06-10_19:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_19:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e005 wrfinput_d03_2015-06-10_19:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_19:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_19:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e006 wrfinput_d01_2015-06-10_19:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e006 wrfbdy_d01_2015-06-10_19:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_19:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e006 wrfinput_d02_2015-06-10_19:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_19:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e006 wrfinput_d03_2015-06-10_19:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_19:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_19:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e007 wrfinput_d01_2015-06-10_19:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e007 wrfbdy_d01_2015-06-10_19:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_19:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e007 wrfinput_d02_2015-06-10_19:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_19:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e007 wrfinput_d03_2015-06-10_19:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_19:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_19:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e008 wrfinput_d01_2015-06-10_19:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e008 wrfbdy_d01_2015-06-10_19:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_19:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e008 wrfinput_d02_2015-06-10_19:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_19:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e008 wrfinput_d03_2015-06-10_19:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_19:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_19:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e009 wrfinput_d01_2015-06-10_19:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e009 wrfbdy_d01_2015-06-10_19:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_19:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e009 wrfinput_d02_2015-06-10_19:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_19:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e009 wrfinput_d03_2015-06-10_19:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_19:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_19:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d01_2015-06-10_19:00:00.e010 wrfinput_d01_2015-06-10_19:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_bc/wrfbdy_d01_2015-06-10_19:00:00.e010 wrfbdy_d01_2015-06-10_19:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_19:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d02_2015-06-10_19:00:00.e010 wrfinput_d02_2015-06-10_19:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_19:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_met_ic/wrfinput_d03_2015-06-10_19:00:00.e010 wrfinput_d03_2015-06-10_19:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061019 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + LE_DATE=2015061020 + export LE_DATE + [[ 2015061019 -le 2015061020 ]] + echo 2015061019 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061019 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_19:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_19:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_19:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_19:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_19:00:00 wrfbiochemi_d01_2015-06-10_19:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_19:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_19:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_19:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32494 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_30341.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149905 + WRFCHEMI=wrfchemi_d02_2015-06-10_19:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_19:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_19:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_19:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_19:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_19:00:00 wrfchemi_d02_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_19:00:00 wrffirechemi_d02_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_19:00:00 wrfbiochemi_d02_2015-06-10_19:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_19:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_19:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_19:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2018 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_18863.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149906 + WRFCHEMI=wrfchemi_d03_2015-06-10_19:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_19:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_19:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_19:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_19:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_19:00:00 wrfchemi_d03_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_19:00:00 wrffirechemi_d03_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_19:00:00 wrfbiochemi_d03_2015-06-10_19:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_19:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_19:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_19:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2085 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_3318.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149907 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061020 ]] + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061019 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_20:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_20:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_20:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_19:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_19:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_20:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_20:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_20:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2460 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_25078.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149908 + WRFCHEMI=wrfchemi_d02_2015-06-10_20:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_20:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_20:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_19:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_19:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_20:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_20:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_20:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2512 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_7975.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149909 + WRFCHEMI=wrfchemi_d03_2015-06-10_20:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_20:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_20:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_19:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_19:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_20:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_20:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_20:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2611 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_15167.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149910 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061020 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_19:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_19:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_19:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 19 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=19 + export L_HH + D_DATE=2015061019 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=19 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=19 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=18 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=19 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061019.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061019.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 19 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=19 + export L_HH + D_DATE=2015061019 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=19 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=19 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=18 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=19 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061019.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061019.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/prepbufr_met_obs/obs_seq_prep_2015061019.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/prepbufr_met_obs/obs_seq_prep_2015061019.out ./obs_seq_MET_2015061019.out + FILE_LIST[1]=obs_seq_MET_2015061019.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/airnow_o3_obs/obs_seq_airnow_o3_2015061019.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/airnow_o3_obs/obs_seq_airnow_o3_2015061019.out ./obs_seq_AIR_O3_2015061019.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061019.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/tolnet_o3_obs/obs_seq_tolnet_o3_2015061019.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/tolnet_o3_obs/obs_seq_tolnet_o3_2015061019.out ./obs_seq_TOL_O3_2015061019.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061019.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061019.out\',\'obs_seq_AIR_O3_2015061019.out\',\'obs_seq_TOL_O3_2015061019.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=66600 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=70200 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 66600, last_obs_days = 151370, last_obs_seconds = 70200, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 7 54 49 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=66600 which is Gregorian day: 2015 Jun 10 18:30:00 Excluding observations after: day=151370, sec=70200 which is Gregorian day: 2015 Jun 10 19:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061019.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 14530 Number of obs really inserted : 14530 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061019.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 14530 Number of obs to be inserted : 947 Number of obs really inserted : 947 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_TOL_O3_2015061019.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: TOLNET observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: TOLNET QC index -------------- Obs seq file # : 3 Number of obs in previous seq : 15477 Number of obs to be inserted : 605 Number of obs really inserted : 605 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 16082 Actual number of obs in the new seq file : 16082 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=66718 Gregorian day: 2015 Jun 10 18:31:58 Last obs time: day=151370, sec=70200 Gregorian day: 2015 Jun 10 19:30:00 Number of obs processed : 16082 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 76 obs RADIOSONDE_V_WIND_COMPONENT 76 obs RADIOSONDE_TEMPERATURE 89 obs RADIOSONDE_SPECIFIC_HUMIDITY 89 obs AIRCRAFT_U_WIND_COMPONENT 1 obs AIRCRAFT_V_WIND_COMPONENT 1 obs AIRCRAFT_TEMPERATURE 7 obs MARINE_SFC_U_WIND_COMPONENT 568 obs MARINE_SFC_V_WIND_COMPONENT 568 obs MARINE_SFC_TEMPERATURE 618 obs MARINE_SFC_SPECIFIC_HUMIDITY 155 obs LAND_SFC_U_WIND_COMPONENT 31 obs LAND_SFC_V_WIND_COMPONENT 31 obs LAND_SFC_TEMPERATURE 31 obs LAND_SFC_SPECIFIC_HUMIDITY 23 obs SAT_U_WIND_COMPONENT 5738 obs SAT_V_WIND_COMPONENT 5738 obs RADIOSONDE_SURFACE_ALTIMETER 1 obs MARINE_SFC_ALTIMETER 658 obs LAND_SFC_ALTIMETER 31 obs AIRNOW_O3 947 obs TOLNET_O3 605 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 7 54 49 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061019.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_19:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_19:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_19:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_19:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_19:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_19:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66600, last_obs_days = 151370, last_obs_seconds = 70200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 19, 0, 0, last_bin_center = 2015, 6, 10, 19, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 66600, last_obs_days = 151370, last_obs_seconds = 70200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 66600, last_obs_days = 151370, last_obs_seconds = 70200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 72000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/combine_obs/obs_seq_comb_2015061019.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 68400 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150017 + mv obs_seq.new obs_seq_comb_filtered_2015061019.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061020 + export CYCLE_DATE + [[ 2015061020 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061020 + export DATE + cut -c1-4 + echo 2015061020 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061020 + YY=15 + export YY + cut -c5-6 + echo 2015061020 + MM=06 + export MM + cut -c7-8 + echo 2015061020 + DD=10 + export DD + cut -c9-10 + echo 2015061020 + HH=20 + export HH + DATE_SHORT=15061020 + export DATE_SHORT + FILE_DATE=2015-06-10_20:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 -1 + 2> /dev/null + PAST_DATE=2015061019 + export PAST_DATE + cut -c1-4 + echo 2015061019 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061019 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061019 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061019 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061019 + PAST_HH=19 + export PAST_HH + PAST_FILE_DATE=2015-06-10_19:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +1 + 2> /dev/null + NEXT_DATE=2015061021 + export NEXT_DATE + cut -c1-4 + echo 2015061021 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061021 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061021 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061021 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061021 + NEXT_HH=21 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_21:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=20 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 20 + 0 )) + [[ 20 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=20 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 20 + 0 )) + D_DATE=2015061020 + export D_DATE + echo 2015061020 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 72000 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=72000 + export SEC_GREG + echo 2015061021 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 75600 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=75600 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 -30m + 2> /dev/null + ASIM_MIN_DATE=201506101930 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506101930 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506101930 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506101930 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506101930 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506101930 + ASIM_MIN_HH=19 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +30m + 2> /dev/null + ASIM_MAX_DATE=201506102030 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506102030 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506102030 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506102030 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506102030 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506102030 + ASIM_MAX_HH=20 + export ASIM_MAX_HH + echo 201506101930 201506101930 + echo 201506101930 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 70200 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=70200 + export ASIM_MIN_SEC_GREG + echo 201506102030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 73800 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=73800 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061020 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061020 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + END_DATE=2015061021 + export END_DATE + cut -c1-4 + echo 2015061020 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061020 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061020 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061020 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061020 + START_HOUR=20 + export START_HOUR + START_FILE_DATE=2015-06-10_20:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061021 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061021 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061021 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061021 + END_HOUR=21 + export END_HOUR + END_FILE_DATE=2015-06-10_21:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061019/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=20,20,20 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=21,21,21 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_19:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_20:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506101930 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 70200 + (( temp[1]=70200+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=70201 + export NL_FIRST_OBS_SECONDS + echo 201506102030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 73800 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=73800 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061020 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=20 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=20 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=75600 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 -30m + 2> /dev/null + ASIM_DATE_MIN=201506101930 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +30m + 2> /dev/null + ASIM_DATE_MAX=201506102030 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506101930 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506101930 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506101930 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506101930 + ASIM_MN_HH=19 + export ASIM_MN_HH + cut -c1-4 + echo 201506102030 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506102030 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506102030 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506102030 + ASIM_MX_HH=20 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + E_DATE=2015061021 + export E_DATE + cut -c1-4 + echo 2015061021 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061021 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061021 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061021 + E_HH=21 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061020 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_END_DATE=2015061021 + export L_END_DATE + cut -c1-4 + echo 2015061020 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061020 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061020 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061020 + L_START_HOUR=20 + export L_START_HOUR + cut -c1-4 + echo 2015061021 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061021 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061021 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061021 + L_END_HOUR=21 + export L_END_HOUR + cut -c1-4 + echo 2015061020 + cut -c1-4 + echo 2015061020 + cut -c1-4 + echo 2015061020 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061020 + cut -c5-6 + echo 2015061020 + cut -c5-6 + echo 2015061020 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061020 + cut -c7-8 + echo 2015061020 + cut -c7-8 + echo 2015061020 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061020 + cut -c9-10 + echo 2015061020 + cut -c9-10 + echo 2015061020 + NL_START_HOUR=20,20,20 + export NL_START_HOUR + cut -c1-4 + echo 2015061021 + cut -c1-4 + echo 2015061021 + cut -c1-4 + echo 2015061021 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061021 + cut -c5-6 + echo 2015061021 + cut -c5-6 + echo 2015061021 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061021 + cut -c7-8 + echo 2015061021 + cut -c7-8 + echo 2015061021 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061021 + cut -c9-10 + echo 2015061021 + cut -c9-10 + echo 2015061021 + NL_END_HOUR=21,21,21 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_20:00:00\',\'2015-06-10_20:00:00\',\'2015-06-10_20:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_21:00:00\',\'2015-06-10_21:00:00\',\'2015-06-10_21:00:00\'' + export NL_END_DATE + P_DATE=2015061020 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + P_END_DATE=2015061021 + export P_END_DATE + [[ 2015061020 -le 2015061021 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_20:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_19:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_20:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4473 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2901.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150018 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4487 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14512.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150019 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4501 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5261.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150020 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4528 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26155.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150021 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4541 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8879.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150022 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4555 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18945.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150023 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4582 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2173.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150024 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4595 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18610.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150025 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4609 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2425.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150026 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4636 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24531.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150027 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4649 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10764.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150028 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4663 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9457.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150029 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4690 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30943.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150030 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4704 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32734.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150031 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4717 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15639.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150032 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4744 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24880.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150033 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4758 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11521.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150034 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4771 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23206.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150035 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4798 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6003.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150036 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4812 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9618.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150037 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4825 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1174.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150038 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4852 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22391.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150039 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4866 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12106.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150040 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4879 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22536.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150041 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4907 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10642.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150042 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4920 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11042.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150043 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4933 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18037.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150044 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4961 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20083.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150045 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4974 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13454.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150046 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_20:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_20:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_19:30:00', / &wrfvar22 time_window_max = '2015-06-10_20:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_20:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=4988 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22929.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150047 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_20:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_20:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_20:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + P_DATE=2015061021 + export P_DATE + [[ 2015061021 -le 2015061021 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_21:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_20:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_21:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2901.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5260 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16952.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150048 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14512.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5274 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27833.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150049 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5261.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5288 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22091.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150050 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26155.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5315 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23785.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150051 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8879.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5329 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6558.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150052 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18945.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5342 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9336.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150053 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2173.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5370 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27815.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150054 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18610.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5383 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12978.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150055 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2425.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5397 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26986.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150056 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24531.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5424 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4471.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150057 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10764.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5438 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5443.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150058 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9457.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5452 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17095.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150059 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30943.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5480 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3945.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150060 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32734.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5493 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19631.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150061 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15639.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5507 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27321.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150062 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24880.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5536 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28580.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150063 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11521.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5551 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15309.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150064 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23206.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5564 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18100.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150065 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6003.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5593 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20593.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150066 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9618.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5606 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24654.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150067 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1174.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5620 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4617.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150068 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22391.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5647 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15442.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150069 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12106.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5661 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13868.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150070 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22536.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5675 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16740.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150071 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10642.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5702 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19635.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150072 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11042.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5716 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16899.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150073 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18037.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5729 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14822.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150074 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20083.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -f hhddmmyycc + NL_SEED_ARRAY1=2010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061020 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + [[ 20 -ge 00 ]] + [[ 20 -lt 06 ]] + [[ 20 -ge 06 ]] + [[ 20 -lt 12 ]] + [[ 20 -ge 12 ]] + [[ 20 -lt 18 ]] + [[ 20 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5757 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23042.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150075 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13454.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5770 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_732.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150076 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22929.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 20,20,20, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 21,21,21, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5784 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9989.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150077 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + P_DATE=2015061022 + export P_DATE + [[ 2015061022 -le 2015061021 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 20, 0, 0, last_bin_center = 2015, 6, 10, 20, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061020 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_END_DATE=2015061021 + export L_END_DATE + TRANDOM=23949 + [[ 2015061020 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6212 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7798.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150078 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_20:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 20, 0, 0, last_bin_center = 2015, 6, 10, 20, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061020 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_END_DATE=2015061021 + export L_END_DATE + TRANDOM=23949 + [[ 2015061020 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6423 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31623.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150079 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_20:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 20, 0, 0, last_bin_center = 2015, 6, 10, 20, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061020 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_END_DATE=2015061021 + export L_END_DATE + TRANDOM=23949 + [[ 2015061020 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6639 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6298.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150080 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_20:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 20, 0, 0, last_bin_center = 2015, 6, 10, 20, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061020 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_END_DATE=2015061021 + export L_END_DATE + TRANDOM=23949 + [[ 2015061020 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6851 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8832.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150081 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_20:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 20, 0, 0, last_bin_center = 2015, 6, 10, 20, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061020 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_END_DATE=2015061021 + export L_END_DATE + TRANDOM=23949 + [[ 2015061020 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7062 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13808.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150082 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_20:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 20, 0, 0, last_bin_center = 2015, 6, 10, 20, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061020 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_END_DATE=2015061021 + export L_END_DATE + TRANDOM=23949 + [[ 2015061020 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7274 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12393.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150083 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_20:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 20, 0, 0, last_bin_center = 2015, 6, 10, 20, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061020 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_END_DATE=2015061021 + export L_END_DATE + TRANDOM=23949 + [[ 2015061020 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7487 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_10829.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150084 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_20:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 20, 0, 0, last_bin_center = 2015, 6, 10, 20, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061020 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_END_DATE=2015061021 + export L_END_DATE + TRANDOM=23949 + [[ 2015061020 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7703 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21274.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150085 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_20:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 20, 0, 0, last_bin_center = 2015, 6, 10, 20, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061020 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_END_DATE=2015061021 + export L_END_DATE + TRANDOM=23949 + [[ 2015061020 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7914 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_773.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150086 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_20:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 20, 0, 0, last_bin_center = 2015, 6, 10, 20, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061019.out','obs_seq_AIR_O3_2015061019.out','obs_seq_TOL_O3_2015061019.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70201, last_obs_days = 151370, last_obs_seconds = 73800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061020 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_END_DATE=2015061021 + export L_END_DATE + TRANDOM=23949 + [[ 2015061020 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8125 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16453.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150087 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061021 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_20:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_20:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfinput_d02_2015-06-10_20:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfinput_d03_2015-06-10_20:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfinput_d02_2015-06-10_20:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfinput_d03_2015-06-10_20:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi + L_DATE=2015061020 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + LE_DATE=2015061021 + export LE_DATE + [[ 2015061020 -le 2015061021 ]] + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_20:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_20:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_20:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_20:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_20:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061021 ]] + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_21:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_21:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_21:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_21:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061021 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061020 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150088 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=20 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_20:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_20:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfinput_d01_2015-06-10_20:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 ./. + mv wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e000 + mv wrfbdy_d01_2015-06-10_20:00:00 wrfbdy_d01_2015-06-10_20:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8265 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_20:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.8265 rm -f tmp.8265 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_20:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_20:00:00.e000 set files = ( wrfinput_d01_2015-06-10_20:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_20:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8333 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_20:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.8333 rm -f tmp.8333 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_20:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_20:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_20:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_20:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.8333 rm -f tmp.8333 if ( wrfinput_d01_2015-06-10_20:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_20:00:00.e000 echo wrfinput_d01_2015-06-10_20:00:00.e000 wrfinput_d01_2015-06-10_20:00:00.e000 ln -s wrfinput_d01_2015-06-10_20:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_20:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_20:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_20:00:00.e000 wrfinput_d01_2015-06-10_20:00:00 + mv wrfbdy_d01_2015-06-10_20:00:00.e000 wrfbdy_d01_2015-06-10_20:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=20 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_20:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_20:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8418 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_20:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8418 rm -f tmp.8418 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_20:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_20:00:00.e001 set files = ( wrfinput_d01_2015-06-10_20:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8486 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_20:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8486 rm -f tmp.8486 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_20:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_20:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_20:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8486 rm -f tmp.8486 if ( wrfinput_d01_2015-06-10_20:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 echo wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 ln -s wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_20:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_20:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_20:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_20:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8569 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_20:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8569 rm -f tmp.8569 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_20:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_20:00:00.e002 set files = ( wrfinput_d01_2015-06-10_20:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8637 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_20:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8637 rm -f tmp.8637 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_20:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_20:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_20:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8637 rm -f tmp.8637 if ( wrfinput_d01_2015-06-10_20:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 echo wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 ln -s wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_20:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_20:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_20:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_20:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8720 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_20:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8720 rm -f tmp.8720 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_20:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_20:00:00.e003 set files = ( wrfinput_d01_2015-06-10_20:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8805 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_20:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8805 rm -f tmp.8805 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_20:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_20:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_20:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8805 rm -f tmp.8805 if ( wrfinput_d01_2015-06-10_20:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 echo wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 ln -s wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_20:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_20:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_20:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_20:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8971 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_20:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.8971 rm -f tmp.8971 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_20:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_20:00:00.e004 set files = ( wrfinput_d01_2015-06-10_20:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9071 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_20:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.9071 rm -f tmp.9071 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_20:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_20:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_20:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.9071 rm -f tmp.9071 if ( wrfinput_d01_2015-06-10_20:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 echo wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 ln -s wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_20:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_20:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_20:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_20:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9153 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_20:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.9153 rm -f tmp.9153 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_20:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_20:00:00.e005 set files = ( wrfinput_d01_2015-06-10_20:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9220 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_20:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.9220 rm -f tmp.9220 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_20:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_20:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_20:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.9220 rm -f tmp.9220 if ( wrfinput_d01_2015-06-10_20:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 echo wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 ln -s wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_20:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_20:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_20:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_20:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9302 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_20:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.9302 rm -f tmp.9302 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_20:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_20:00:00.e006 set files = ( wrfinput_d01_2015-06-10_20:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9370 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_20:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.9370 rm -f tmp.9370 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_20:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_20:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_20:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.9370 rm -f tmp.9370 if ( wrfinput_d01_2015-06-10_20:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 echo wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 ln -s wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_20:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_20:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_20:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_20:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9452 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_20:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.9452 rm -f tmp.9452 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_20:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_20:00:00.e007 set files = ( wrfinput_d01_2015-06-10_20:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9519 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_20:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.9519 rm -f tmp.9519 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_20:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_20:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_20:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.9519 rm -f tmp.9519 if ( wrfinput_d01_2015-06-10_20:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 echo wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 ln -s wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_20:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_20:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_20:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_20:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9601 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_20:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9601 rm -f tmp.9601 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_20:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_20:00:00.e008 set files = ( wrfinput_d01_2015-06-10_20:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_20:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9669 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_20:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9669 rm -f tmp.9669 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_20:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_20:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_20:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01_2015-06-10_20:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9669 rm -f tmp.9669 if ( wrfinput_d01_2015-06-10_20:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01_2015-06-10_20:00:00.e008 echo wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01_2015-06-10_20:00:00.e008 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01_2015-06-10_20:00:00.e008 ln -s wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_20:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_20:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_20:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_20:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9751 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_20:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9751 rm -f tmp.9751 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_20:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_20:00:00.e009 set files = ( wrfinput_d01_2015-06-10_20:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_20:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9819 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_20:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9819 rm -f tmp.9819 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_20:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_20:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_20:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01_2015-06-10_20:00:00.e008 wrfinput_d01_2015-06-10_20:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9819 rm -f tmp.9819 if ( wrfinput_d01_2015-06-10_20:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01_2015-06-10_20:00:00.e008 wrfinput_d01_2015-06-10_20:00:00.e009 echo wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01_2015-06-10_20:00:00.e008 wrfinput_d01_2015-06-10_20:00:00.e009 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01_2015-06-10_20:00:00.e008 wrfinput_d01_2015-06-10_20:00:00.e009 ln -s wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_20:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_20:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_20:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_20:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9901 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_20:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9901 rm -f tmp.9901 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_20:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_20:00:00.e010 set files = ( wrfinput_d01_2015-06-10_20:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_20:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_20:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_20:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_20:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9968 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_20:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9968 rm -f tmp.9968 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_20:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_20:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_20:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01_2015-06-10_20:00:00.e008 wrfinput_d01_2015-06-10_20:00:00.e009 wrfinput_d01_2015-06-10_20:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9968 rm -f tmp.9968 if ( wrfinput_d01_2015-06-10_20:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01_2015-06-10_20:00:00.e008 wrfinput_d01_2015-06-10_20:00:00.e009 wrfinput_d01_2015-06-10_20:00:00.e010 echo wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01_2015-06-10_20:00:00.e008 wrfinput_d01_2015-06-10_20:00:00.e009 wrfinput_d01_2015-06-10_20:00:00.e010 wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01_2015-06-10_20:00:00.e008 wrfinput_d01_2015-06-10_20:00:00.e009 wrfinput_d01_2015-06-10_20:00:00.e010 ln -s wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_20:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_20:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_20:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_20:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_20:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150089 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=20 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_20:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfinput_d02_2015-06-10_20:00:00 ./. + mv wrfinput_d02_2015-06-10_20:00:00 wrfinput_d02_2015-06-10_20:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10086 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_20:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.10086 rm -f tmp.10086 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_20:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_20:00:00.e000 set files = ( wrfinput_d02_2015-06-10_20:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_20:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_20:00:00.e000 wrfinput_d02_2015-06-10_20:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=20 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_20:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10161 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_20:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.10161 rm -f tmp.10161 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_20:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_20:00:00.e001 set files = ( wrfinput_d02_2015-06-10_20:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_20:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_20:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10233 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_20:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.10233 rm -f tmp.10233 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_20:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_20:00:00.e002 set files = ( wrfinput_d02_2015-06-10_20:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_20:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_20:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10305 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_20:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.10305 rm -f tmp.10305 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_20:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_20:00:00.e003 set files = ( wrfinput_d02_2015-06-10_20:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_20:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_20:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10377 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_20:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.10377 rm -f tmp.10377 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_20:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_20:00:00.e004 set files = ( wrfinput_d02_2015-06-10_20:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_20:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_20:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10449 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_20:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.10449 rm -f tmp.10449 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_20:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_20:00:00.e005 set files = ( wrfinput_d02_2015-06-10_20:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_20:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_20:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10521 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_20:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.10521 rm -f tmp.10521 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_20:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_20:00:00.e006 set files = ( wrfinput_d02_2015-06-10_20:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_20:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_20:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10593 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_20:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.10593 rm -f tmp.10593 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_20:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_20:00:00.e007 set files = ( wrfinput_d02_2015-06-10_20:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_20:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_20:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10665 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_20:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.10665 rm -f tmp.10665 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_20:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_20:00:00.e008 set files = ( wrfinput_d02_2015-06-10_20:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_20:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_20:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10737 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_20:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.10737 rm -f tmp.10737 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_20:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_20:00:00.e009 set files = ( wrfinput_d02_2015-06-10_20:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_20:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_20:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10810 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_20:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.10810 rm -f tmp.10810 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_20:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_20:00:00.e010 set files = ( wrfinput_d02_2015-06-10_20:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_20:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_20:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_20:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_20:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150090 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=20 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_20:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfinput_d03_2015-06-10_20:00:00 ./. + mv wrfinput_d03_2015-06-10_20:00:00 wrfinput_d03_2015-06-10_20:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10939 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_20:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.10939 rm -f tmp.10939 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_20:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_20:00:00.e000 set files = ( wrfinput_d03_2015-06-10_20:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_20:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_20:00:00.e000 wrfinput_d03_2015-06-10_20:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=20 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_20:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11014 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_20:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.11014 rm -f tmp.11014 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_20:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_20:00:00.e001 set files = ( wrfinput_d03_2015-06-10_20:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_20:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_20:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11086 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_20:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.11086 rm -f tmp.11086 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_20:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_20:00:00.e002 set files = ( wrfinput_d03_2015-06-10_20:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_20:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_20:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11158 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_20:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.11158 rm -f tmp.11158 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_20:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_20:00:00.e003 set files = ( wrfinput_d03_2015-06-10_20:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_20:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_20:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11234 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_20:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.11234 rm -f tmp.11234 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_20:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_20:00:00.e004 set files = ( wrfinput_d03_2015-06-10_20:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_20:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_20:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11306 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_20:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.11306 rm -f tmp.11306 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_20:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_20:00:00.e005 set files = ( wrfinput_d03_2015-06-10_20:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_20:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_20:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11378 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_20:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.11378 rm -f tmp.11378 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_20:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_20:00:00.e006 set files = ( wrfinput_d03_2015-06-10_20:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_20:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_20:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11450 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_20:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.11450 rm -f tmp.11450 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_20:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_20:00:00.e007 set files = ( wrfinput_d03_2015-06-10_20:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_20:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_20:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11522 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_20:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.11522 rm -f tmp.11522 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_20:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_20:00:00.e008 set files = ( wrfinput_d03_2015-06-10_20:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_20:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_20:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11594 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_20:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.11594 rm -f tmp.11594 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_20:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_20:00:00.e009 set files = ( wrfinput_d03_2015-06-10_20:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_20:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_20:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11667 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_20:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.11667 rm -f tmp.11667 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_20:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_20:00:00.e010 set files = ( wrfinput_d03_2015-06-10_20:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_20:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_20:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_20:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_20:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_20:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_20:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01_2015-06-10_20:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfbdy_d01_2015-06-10_20:00:00 wrfbdy_d01_2015-06-10_20:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_20:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfinput_d02_2015-06-10_20:00:00 wrfinput_d02_2015-06-10_20:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_20:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/real/wrfinput_d03_2015-06-10_20:00:00 wrfinput_d03_2015-06-10_20:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_20:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_20:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01_2015-06-10_20:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e001 wrfbdy_d01_2015-06-10_20:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_20:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e001 wrfinput_d02_2015-06-10_20:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_20:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e001 wrfinput_d03_2015-06-10_20:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_20:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_20:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e002 wrfinput_d01_2015-06-10_20:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e002 wrfbdy_d01_2015-06-10_20:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_20:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e002 wrfinput_d02_2015-06-10_20:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_20:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e002 wrfinput_d03_2015-06-10_20:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_20:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_20:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e003 wrfinput_d01_2015-06-10_20:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e003 wrfbdy_d01_2015-06-10_20:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_20:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e003 wrfinput_d02_2015-06-10_20:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_20:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e003 wrfinput_d03_2015-06-10_20:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_20:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_20:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e004 wrfinput_d01_2015-06-10_20:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e004 wrfbdy_d01_2015-06-10_20:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_20:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e004 wrfinput_d02_2015-06-10_20:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_20:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e004 wrfinput_d03_2015-06-10_20:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_20:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_20:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e005 wrfinput_d01_2015-06-10_20:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e005 wrfbdy_d01_2015-06-10_20:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_20:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e005 wrfinput_d02_2015-06-10_20:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_20:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e005 wrfinput_d03_2015-06-10_20:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_20:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_20:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e006 wrfinput_d01_2015-06-10_20:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e006 wrfbdy_d01_2015-06-10_20:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_20:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e006 wrfinput_d02_2015-06-10_20:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_20:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e006 wrfinput_d03_2015-06-10_20:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_20:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_20:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e007 wrfinput_d01_2015-06-10_20:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e007 wrfbdy_d01_2015-06-10_20:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_20:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e007 wrfinput_d02_2015-06-10_20:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_20:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e007 wrfinput_d03_2015-06-10_20:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_20:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_20:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e008 wrfinput_d01_2015-06-10_20:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e008 wrfbdy_d01_2015-06-10_20:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_20:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e008 wrfinput_d02_2015-06-10_20:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_20:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e008 wrfinput_d03_2015-06-10_20:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_20:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_20:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e009 wrfinput_d01_2015-06-10_20:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e009 wrfbdy_d01_2015-06-10_20:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_20:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e009 wrfinput_d02_2015-06-10_20:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_20:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e009 wrfinput_d03_2015-06-10_20:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_20:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_20:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d01_2015-06-10_20:00:00.e010 wrfinput_d01_2015-06-10_20:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_bc/wrfbdy_d01_2015-06-10_20:00:00.e010 wrfbdy_d01_2015-06-10_20:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_20:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d02_2015-06-10_20:00:00.e010 wrfinput_d02_2015-06-10_20:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_20:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_met_ic/wrfinput_d03_2015-06-10_20:00:00.e010 wrfinput_d03_2015-06-10_20:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061020 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + LE_DATE=2015061021 + export LE_DATE + [[ 2015061020 -le 2015061021 ]] + echo 2015061020 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061020 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_20:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_20:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_20:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_20:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_20:00:00 wrfbiochemi_d01_2015-06-10_20:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_20:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_20:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_20:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12268 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_9436.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150092 + WRFCHEMI=wrfchemi_d02_2015-06-10_20:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_20:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_20:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_20:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_20:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_20:00:00 wrfchemi_d02_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_20:00:00 wrffirechemi_d02_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_20:00:00 wrfbiochemi_d02_2015-06-10_20:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_20:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_20:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_20:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12320 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_11473.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150093 + WRFCHEMI=wrfchemi_d03_2015-06-10_20:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_20:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_20:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_20:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_20:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_20:00:00 wrfchemi_d03_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_20:00:00 wrffirechemi_d03_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_20:00:00 wrfbiochemi_d03_2015-06-10_20:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_20:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_20:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_20:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12387 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_18625.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150094 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061021 ]] + echo 2015061021 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061020 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_21:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_21:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_21:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_20:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_20:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_21:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_21:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_21:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12740 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_6818.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150095 + WRFCHEMI=wrfchemi_d02_2015-06-10_21:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_21:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_21:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_20:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_20:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_21:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_21:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_21:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12792 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_2629.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150096 + WRFCHEMI=wrfchemi_d03_2015-06-10_21:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_21:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_21:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_20:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_20:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_21:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_21:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_21:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12857 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_16639.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150097 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061021 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_20:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_20:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_20:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 20 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=20 + export L_HH + D_DATE=2015061020 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=20 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=20 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=19 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=20 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061020.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061020.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 20 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=20 + export L_HH + D_DATE=2015061020 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=20 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=20 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=19 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=20 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061020.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061020.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/prepbufr_met_obs/obs_seq_prep_2015061020.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/prepbufr_met_obs/obs_seq_prep_2015061020.out ./obs_seq_MET_2015061020.out + FILE_LIST[1]=obs_seq_MET_2015061020.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/airnow_o3_obs/obs_seq_airnow_o3_2015061020.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/airnow_o3_obs/obs_seq_airnow_o3_2015061020.out ./obs_seq_AIR_O3_2015061020.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061020.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/tolnet_o3_obs/obs_seq_tolnet_o3_2015061020.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/tolnet_o3_obs/obs_seq_tolnet_o3_2015061020.out ./obs_seq_TOL_O3_2015061020.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061020.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061020.out\',\'obs_seq_AIR_O3_2015061020.out\',\'obs_seq_TOL_O3_2015061020.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=70200 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=73800 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 70200, last_obs_days = 151370, last_obs_seconds = 73800, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 8 14 51 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=70200 which is Gregorian day: 2015 Jun 10 19:30:00 Excluding observations after: day=151370, sec=73800 which is Gregorian day: 2015 Jun 10 20:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061020.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 2694 Number of obs really inserted : 2694 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061020.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 2694 Number of obs to be inserted : 951 Number of obs really inserted : 951 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_TOL_O3_2015061020.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: TOLNET observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: TOLNET QC index -------------- Obs seq file # : 3 Number of obs in previous seq : 3645 Number of obs to be inserted : 605 Number of obs really inserted : 605 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 4250 Actual number of obs in the new seq file : 4250 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=70318 Gregorian day: 2015 Jun 10 19:31:58 Last obs time: day=151370, sec=73800 Gregorian day: 2015 Jun 10 20:30:00 Number of obs processed : 4250 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 1 obs RADIOSONDE_V_WIND_COMPONENT 1 obs RADIOSONDE_TEMPERATURE 1 obs AIRCRAFT_U_WIND_COMPONENT 4 obs AIRCRAFT_V_WIND_COMPONENT 4 obs AIRCRAFT_TEMPERATURE 5 obs MARINE_SFC_U_WIND_COMPONENT 557 obs MARINE_SFC_V_WIND_COMPONENT 557 obs MARINE_SFC_TEMPERATURE 609 obs MARINE_SFC_SPECIFIC_HUMIDITY 149 obs LAND_SFC_U_WIND_COMPONENT 33 obs LAND_SFC_V_WIND_COMPONENT 33 obs LAND_SFC_TEMPERATURE 33 obs LAND_SFC_SPECIFIC_HUMIDITY 24 obs MARINE_SFC_ALTIMETER 650 obs LAND_SFC_ALTIMETER 33 obs AIRNOW_O3 951 obs TOLNET_O3 605 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 8 14 51 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061020.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_20:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_20:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_20:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_20:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_20:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_20:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70200, last_obs_days = 151370, last_obs_seconds = 73800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 20, 0, 0, last_bin_center = 2015, 6, 10, 20, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 70200, last_obs_days = 151370, last_obs_seconds = 73800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 70200, last_obs_days = 151370, last_obs_seconds = 73800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 75600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/combine_obs/obs_seq_comb_2015061020.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 72000 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150100 + mv obs_seq.new obs_seq_comb_filtered_2015061020.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061021 + export CYCLE_DATE + [[ 2015061021 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061021 + export DATE + echo 2015061021 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061021 + YY=15 + export YY + cut -c5-6 + echo 2015061021 + MM=06 + export MM + cut -c7-8 + echo 2015061021 + DD=10 + export DD + cut -c9-10 + echo 2015061021 + HH=21 + export HH + DATE_SHORT=15061021 + export DATE_SHORT + FILE_DATE=2015-06-10_21:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 -1 + 2> /dev/null + PAST_DATE=2015061020 + export PAST_DATE + cut -c1-4 + echo 2015061020 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061020 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061020 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061020 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061020 + PAST_HH=20 + export PAST_HH + PAST_FILE_DATE=2015-06-10_20:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +1 + 2> /dev/null + NEXT_DATE=2015061022 + export NEXT_DATE + cut -c1-4 + echo 2015061022 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061022 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061022 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061022 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061022 + NEXT_HH=22 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_22:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=21 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 21 + 0 )) + [[ 21 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=21 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 21 + 0 )) + D_DATE=2015061021 + export D_DATE + echo 2015061021 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 75600 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=75600 + export SEC_GREG + echo 2015061022 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 79200 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=79200 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 -30m + 2> /dev/null + ASIM_MIN_DATE=201506102030 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506102030 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506102030 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506102030 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506102030 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506102030 + ASIM_MIN_HH=20 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +30m + 2> /dev/null + ASIM_MAX_DATE=201506102130 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506102130 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506102130 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506102130 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506102130 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506102130 + ASIM_MAX_HH=21 + export ASIM_MAX_HH + echo 201506102030 201506102030 + echo 201506102030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 73800 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=73800 + export ASIM_MIN_SEC_GREG + echo 201506102130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 77400 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=77400 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061021 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061021 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + END_DATE=2015061022 + export END_DATE + cut -c1-4 + echo 2015061021 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061021 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061021 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061021 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061021 + START_HOUR=21 + export START_HOUR + START_FILE_DATE=2015-06-10_21:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061022 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061022 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061022 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061022 + END_HOUR=22 + export END_HOUR + END_FILE_DATE=2015-06-10_22:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061020/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=21,21,21 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=22,22,22 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_20:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_21:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506102030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 73800 + (( temp[1]=73800+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=73801 + export NL_FIRST_OBS_SECONDS + echo 201506102130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 77400 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=77400 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061021 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=21 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=21 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=79200 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 -30m + 2> /dev/null + ASIM_DATE_MIN=201506102030 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +30m + 2> /dev/null + ASIM_DATE_MAX=201506102130 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506102030 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506102030 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506102030 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506102030 + ASIM_MN_HH=20 + export ASIM_MN_HH + cut -c1-4 + echo 201506102130 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506102130 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506102130 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506102130 + ASIM_MX_HH=21 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + E_DATE=2015061022 + export E_DATE + cut -c1-4 + echo 2015061022 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061022 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061022 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061022 + E_HH=22 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061021 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_END_DATE=2015061022 + export L_END_DATE + cut -c1-4 + echo 2015061021 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061021 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061021 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061021 + L_START_HOUR=21 + export L_START_HOUR + cut -c1-4 + echo 2015061022 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061022 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061022 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061022 + L_END_HOUR=22 + export L_END_HOUR + cut -c1-4 + echo 2015061021 + cut -c1-4 + echo 2015061021 + cut -c1-4 + echo 2015061021 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061021 + cut -c5-6 + echo 2015061021 + cut -c5-6 + echo 2015061021 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061021 + cut -c7-8 + echo 2015061021 + cut -c7-8 + echo 2015061021 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061021 + cut -c9-10 + echo 2015061021 + cut -c9-10 + echo 2015061021 + NL_START_HOUR=21,21,21 + export NL_START_HOUR + cut -c1-4 + echo 2015061022 + cut -c1-4 + echo 2015061022 + cut -c1-4 + echo 2015061022 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061022 + cut -c5-6 + echo 2015061022 + cut -c5-6 + echo 2015061022 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061022 + cut -c7-8 + echo 2015061022 + cut -c7-8 + echo 2015061022 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061022 + cut -c9-10 + echo 2015061022 + cut -c9-10 + echo 2015061022 + NL_END_HOUR=22,22,22 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_21:00:00\',\'2015-06-10_21:00:00\',\'2015-06-10_21:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_22:00:00\',\'2015-06-10_22:00:00\',\'2015-06-10_22:00:00\'' + export NL_END_DATE + P_DATE=2015061021 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + P_END_DATE=2015061022 + export P_END_DATE + [[ 2015061021 -le 2015061022 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_21:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_20:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_21:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14635 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14495.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150101 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14648 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19489.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150102 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14662 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14318.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150103 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14689 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20784.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150104 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14702 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5189.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150105 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14716 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23924.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150106 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14743 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15843.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150107 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14757 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23618.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150108 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14770 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12893.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150109 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14797 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13732.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150110 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14811 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_87.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150111 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14824 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13018.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150112 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14851 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19325.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150113 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14865 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27024.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150114 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14878 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13932.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150115 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14905 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4876.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150116 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14920 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1628.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150117 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14933 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31892.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150118 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14962 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28827.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150119 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14975 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14827.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150120 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14988 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25690.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150121 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15016 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1505.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150122 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15030 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20571.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150123 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15043 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29624.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150124 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15071 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11305.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150125 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15084 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10549.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150126 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15097 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_905.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150127 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15126 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30010.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150128 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15202 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16640.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150129 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_20:30:00', / &wrfvar22 time_window_max = '2015-06-10_21:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15215 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_670.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150130 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_21:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_21:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + P_DATE=2015061022 + export P_DATE + [[ 2015061022 -le 2015061022 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_22:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_21:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_22:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14495.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15427 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14181.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150131 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19489.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15441 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6746.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150132 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14318.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15455 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5896.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150133 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20784.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15483 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20186.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150134 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5189.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15496 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32205.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150135 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23924.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15510 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23391.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150136 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15843.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15537 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10998.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150137 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23618.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15551 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3648.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150138 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12893.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15564 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2375.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150139 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13732.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15592 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7905.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150140 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_87.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15606 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16861.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150141 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13018.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15620 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8216.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150142 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19325.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15648 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30169.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150143 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27024.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15661 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12691.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150144 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13932.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15676 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17332.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150145 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4876.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15703 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14283.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150146 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1628.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15717 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19489.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150147 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31892.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15730 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23599.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150148 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28827.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15758 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3621.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150149 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14827.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15771 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6712.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150150 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25690.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15785 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16259.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150151 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1505.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15813 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5934.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150152 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20571.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15828 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13236.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150153 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29624.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15841 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_971.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150154 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11305.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15869 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11853.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150155 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10549.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15882 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18988.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150156 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_905.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15896 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5772.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150157 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30010.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -f hhddmmyycc + NL_SEED_ARRAY1=2110061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061021 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + [[ 21 -ge 00 ]] + [[ 21 -lt 06 ]] + [[ 21 -ge 06 ]] + [[ 21 -lt 12 ]] + [[ 21 -ge 12 ]] + [[ 21 -lt 18 ]] + [[ 21 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15923 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29407.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150158 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16640.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15937 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22357.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150159 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_670.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 21,21,21, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 22,22,22, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15951 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19666.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150160 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + P_DATE=2015061023 + export P_DATE + [[ 2015061023 -le 2015061022 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 21, 0, 0, last_bin_center = 2015, 6, 10, 21, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061021 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_END_DATE=2015061022 + export L_END_DATE + TRANDOM=23949 + [[ 2015061021 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + NEXT_L_DATE=2015061022 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_22:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16379 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_17912.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150161 + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_21:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 21, 0, 0, last_bin_center = 2015, 6, 10, 21, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061021 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_END_DATE=2015061022 + export L_END_DATE + TRANDOM=23949 + [[ 2015061021 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + NEXT_L_DATE=2015061022 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_22:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16591 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_10957.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150162 + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_21:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 21, 0, 0, last_bin_center = 2015, 6, 10, 21, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061021 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_END_DATE=2015061022 + export L_END_DATE + TRANDOM=23949 + [[ 2015061021 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + NEXT_L_DATE=2015061022 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_22:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=16806 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_10417.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150163 + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_21:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 21, 0, 0, last_bin_center = 2015, 6, 10, 21, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061021 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_END_DATE=2015061022 + export L_END_DATE + TRANDOM=23949 + [[ 2015061021 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + NEXT_L_DATE=2015061022 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_22:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17018 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18461.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150164 + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_21:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 21, 0, 0, last_bin_center = 2015, 6, 10, 21, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061021 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_END_DATE=2015061022 + export L_END_DATE + TRANDOM=23949 + [[ 2015061021 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + NEXT_L_DATE=2015061022 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_22:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17229 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_4603.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150165 + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_21:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 21, 0, 0, last_bin_center = 2015, 6, 10, 21, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061021 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_END_DATE=2015061022 + export L_END_DATE + TRANDOM=23949 + [[ 2015061021 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + NEXT_L_DATE=2015061022 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_22:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17440 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6696.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150166 + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_21:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 21, 0, 0, last_bin_center = 2015, 6, 10, 21, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061021 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_END_DATE=2015061022 + export L_END_DATE + TRANDOM=23949 + [[ 2015061021 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + NEXT_L_DATE=2015061022 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_22:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17656 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2665.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150167 + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_21:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 21, 0, 0, last_bin_center = 2015, 6, 10, 21, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061021 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_END_DATE=2015061022 + export L_END_DATE + TRANDOM=23949 + [[ 2015061021 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + NEXT_L_DATE=2015061022 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_22:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=17867 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_14558.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150168 + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_21:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 21, 0, 0, last_bin_center = 2015, 6, 10, 21, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061021 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_END_DATE=2015061022 + export L_END_DATE + TRANDOM=23949 + [[ 2015061021 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + NEXT_L_DATE=2015061022 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_22:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18078 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9337.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150169 + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_21:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 21, 0, 0, last_bin_center = 2015, 6, 10, 21, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061020.out','obs_seq_AIR_O3_2015061020.out','obs_seq_TOL_O3_2015061020.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73801, last_obs_days = 151370, last_obs_seconds = 77400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061021 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_END_DATE=2015061022 + export L_END_DATE + TRANDOM=23949 + [[ 2015061021 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + NEXT_L_DATE=2015061022 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_22:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=18291 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5126.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150170 + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -lt 2015061022 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_21:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfinput_d02_2015-06-10_21:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfinput_d03_2015-06-10_21:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfinput_d02_2015-06-10_21:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfinput_d03_2015-06-10_21:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi + L_DATE=2015061021 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + LE_DATE=2015061022 + export LE_DATE + [[ 2015061021 -le 2015061022 ]] + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_21:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_21:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_21:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_21:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061022 ]] + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_22:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_22:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_22:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_22:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_22:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061022 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061021 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150172 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=21 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_21:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_21:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfinput_d01_2015-06-10_21:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 ./. + mv wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e000 + mv wrfbdy_d01_2015-06-10_21:00:00 wrfbdy_d01_2015-06-10_21:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18430 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_21:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.18430 rm -f tmp.18430 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_21:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_21:00:00.e000 set files = ( wrfinput_d01_2015-06-10_21:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_21:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18498 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_21:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.18498 rm -f tmp.18498 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_21:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_21:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_21:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_21:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.18498 rm -f tmp.18498 if ( wrfinput_d01_2015-06-10_21:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_21:00:00.e000 echo wrfinput_d01_2015-06-10_21:00:00.e000 wrfinput_d01_2015-06-10_21:00:00.e000 ln -s wrfinput_d01_2015-06-10_21:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_21:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_21:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_21:00:00.e000 wrfinput_d01_2015-06-10_21:00:00 + mv wrfbdy_d01_2015-06-10_21:00:00.e000 wrfbdy_d01_2015-06-10_21:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=21 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_21:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_21:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18583 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_21:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.18583 rm -f tmp.18583 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_21:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_21:00:00.e001 set files = ( wrfinput_d01_2015-06-10_21:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18651 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_21:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.18651 rm -f tmp.18651 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_21:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_21:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_21:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.18651 rm -f tmp.18651 if ( wrfinput_d01_2015-06-10_21:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 echo wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 ln -s wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_21:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_21:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_21:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_21:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18733 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_21:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.18733 rm -f tmp.18733 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_21:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_21:00:00.e002 set files = ( wrfinput_d01_2015-06-10_21:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.18864 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_21:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.18864 rm -f tmp.18864 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_21:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_21:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_21:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.18864 rm -f tmp.18864 if ( wrfinput_d01_2015-06-10_21:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 echo wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 ln -s wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_21:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_21:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_21:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_21:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19014 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_21:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.19014 rm -f tmp.19014 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_21:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_21:00:00.e003 set files = ( wrfinput_d01_2015-06-10_21:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19081 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_21:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.19081 rm -f tmp.19081 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_21:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_21:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_21:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.19081 rm -f tmp.19081 if ( wrfinput_d01_2015-06-10_21:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 echo wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 ln -s wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_21:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_21:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_21:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_21:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19163 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_21:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.19163 rm -f tmp.19163 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_21:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_21:00:00.e004 set files = ( wrfinput_d01_2015-06-10_21:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19231 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_21:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.19231 rm -f tmp.19231 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_21:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_21:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_21:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.19231 rm -f tmp.19231 if ( wrfinput_d01_2015-06-10_21:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 echo wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 ln -s wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_21:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_21:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_21:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_21:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19313 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_21:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.19313 rm -f tmp.19313 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_21:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_21:00:00.e005 set files = ( wrfinput_d01_2015-06-10_21:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19381 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_21:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.19381 rm -f tmp.19381 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_21:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_21:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_21:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.19381 rm -f tmp.19381 if ( wrfinput_d01_2015-06-10_21:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 echo wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 ln -s wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_21:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_21:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_21:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_21:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19463 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_21:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.19463 rm -f tmp.19463 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_21:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_21:00:00.e006 set files = ( wrfinput_d01_2015-06-10_21:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19530 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_21:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.19530 rm -f tmp.19530 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_21:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_21:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_21:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.19530 rm -f tmp.19530 if ( wrfinput_d01_2015-06-10_21:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 echo wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 ln -s wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_21:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_21:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_21:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_21:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19612 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_21:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.19612 rm -f tmp.19612 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_21:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_21:00:00.e007 set files = ( wrfinput_d01_2015-06-10_21:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19680 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_21:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.19680 rm -f tmp.19680 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_21:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_21:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_21:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.19680 rm -f tmp.19680 if ( wrfinput_d01_2015-06-10_21:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 echo wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 ln -s wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_21:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_21:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_21:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_21:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19762 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_21:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.19762 rm -f tmp.19762 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_21:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_21:00:00.e008 set files = ( wrfinput_d01_2015-06-10_21:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19829 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_21:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.19829 rm -f tmp.19829 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_21:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_21:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_21:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01_2015-06-10_21:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.19829 rm -f tmp.19829 if ( wrfinput_d01_2015-06-10_21:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01_2015-06-10_21:00:00.e008 echo wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01_2015-06-10_21:00:00.e008 ln -s wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_21:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_21:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_21:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_21:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19911 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_21:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.19911 rm -f tmp.19911 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_21:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_21:00:00.e009 set files = ( wrfinput_d01_2015-06-10_21:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_21:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.19979 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_21:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.19979 rm -f tmp.19979 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_21:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_21:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_21:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_d01_2015-06-10_21:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.19979 rm -f tmp.19979 if ( wrfinput_d01_2015-06-10_21:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_d01_2015-06-10_21:00:00.e009 echo wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_d01_2015-06-10_21:00:00.e009 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_d01_2015-06-10_21:00:00.e009 ln -s wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_21:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_21:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_21:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_21:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20061 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_21:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.20061 rm -f tmp.20061 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_21:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_21:00:00.e010 set files = ( wrfinput_d01_2015-06-10_21:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_21:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_21:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_21:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_21:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.20129 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_21:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.20129 rm -f tmp.20129 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_21:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_21:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_21:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_d01_2015-06-10_21:00:00.e009 wrfinput_d01_2015-06-10_21:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.20129 rm -f tmp.20129 if ( wrfinput_d01_2015-06-10_21:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_d01_2015-06-10_21:00:00.e009 wrfinput_d01_2015-06-10_21:00:00.e010 echo wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_d01_2015-06-10_21:00:00.e009 wrfinput_d01_2015-06-10_21:00:00.e010 wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_d01_2015-06-10_21:00:00.e009 wrfinput_d01_2015-06-10_21:00:00.e010 ln -s wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_21:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_21:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_21:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_21:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_21:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150174 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=21 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_21:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfinput_d02_2015-06-10_21:00:00 ./. + mv wrfinput_d02_2015-06-10_21:00:00 wrfinput_d02_2015-06-10_21:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20246 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_21:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.20246 rm -f tmp.20246 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_21:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_21:00:00.e000 set files = ( wrfinput_d02_2015-06-10_21:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_21:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_21:00:00.e000 wrfinput_d02_2015-06-10_21:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=21 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_21:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20320 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_21:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.20320 rm -f tmp.20320 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_21:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_21:00:00.e001 set files = ( wrfinput_d02_2015-06-10_21:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_21:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_21:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20392 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_21:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.20392 rm -f tmp.20392 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_21:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_21:00:00.e002 set files = ( wrfinput_d02_2015-06-10_21:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_21:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_21:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20464 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_21:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.20464 rm -f tmp.20464 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_21:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_21:00:00.e003 set files = ( wrfinput_d02_2015-06-10_21:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_21:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_21:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20537 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_21:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.20537 rm -f tmp.20537 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_21:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_21:00:00.e004 set files = ( wrfinput_d02_2015-06-10_21:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_21:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_21:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20610 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_21:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.20610 rm -f tmp.20610 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_21:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_21:00:00.e005 set files = ( wrfinput_d02_2015-06-10_21:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_21:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_21:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20682 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_21:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.20682 rm -f tmp.20682 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_21:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_21:00:00.e006 set files = ( wrfinput_d02_2015-06-10_21:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_21:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_21:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20754 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_21:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.20754 rm -f tmp.20754 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_21:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_21:00:00.e007 set files = ( wrfinput_d02_2015-06-10_21:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_21:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_21:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20826 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_21:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.20826 rm -f tmp.20826 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_21:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_21:00:00.e008 set files = ( wrfinput_d02_2015-06-10_21:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_21:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_21:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20899 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_21:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.20899 rm -f tmp.20899 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_21:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_21:00:00.e009 set files = ( wrfinput_d02_2015-06-10_21:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_21:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_21:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.20971 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_21:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.20971 rm -f tmp.20971 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_21:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_21:00:00.e010 set files = ( wrfinput_d02_2015-06-10_21:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_21:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_21:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_21:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_21:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150175 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=21 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_21:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfinput_d03_2015-06-10_21:00:00 ./. + mv wrfinput_d03_2015-06-10_21:00:00 wrfinput_d03_2015-06-10_21:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21081 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_21:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.21081 rm -f tmp.21081 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_21:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_21:00:00.e000 set files = ( wrfinput_d03_2015-06-10_21:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_21:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_21:00:00.e000 wrfinput_d03_2015-06-10_21:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=21 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_21:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21156 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_21:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.21156 rm -f tmp.21156 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_21:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_21:00:00.e001 set files = ( wrfinput_d03_2015-06-10_21:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_21:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_21:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21228 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_21:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.21228 rm -f tmp.21228 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_21:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_21:00:00.e002 set files = ( wrfinput_d03_2015-06-10_21:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_21:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_21:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21300 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_21:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.21300 rm -f tmp.21300 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_21:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_21:00:00.e003 set files = ( wrfinput_d03_2015-06-10_21:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_21:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_21:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21376 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_21:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.21376 rm -f tmp.21376 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_21:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_21:00:00.e004 set files = ( wrfinput_d03_2015-06-10_21:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_21:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_21:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21448 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_21:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.21448 rm -f tmp.21448 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_21:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_21:00:00.e005 set files = ( wrfinput_d03_2015-06-10_21:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_21:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_21:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21520 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_21:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.21520 rm -f tmp.21520 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_21:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_21:00:00.e006 set files = ( wrfinput_d03_2015-06-10_21:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_21:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_21:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21592 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_21:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.21592 rm -f tmp.21592 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_21:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_21:00:00.e007 set files = ( wrfinput_d03_2015-06-10_21:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_21:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_21:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21664 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_21:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.21664 rm -f tmp.21664 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_21:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_21:00:00.e008 set files = ( wrfinput_d03_2015-06-10_21:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_21:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_21:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21736 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_21:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.21736 rm -f tmp.21736 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_21:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_21:00:00.e009 set files = ( wrfinput_d03_2015-06-10_21:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_21:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_21:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.21808 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_21:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.21808 rm -f tmp.21808 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_21:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_21:00:00.e010 set files = ( wrfinput_d03_2015-06-10_21:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_21:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_21:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_21:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_21:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_21:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_21:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01_2015-06-10_21:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfbdy_d01_2015-06-10_21:00:00 wrfbdy_d01_2015-06-10_21:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_21:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfinput_d02_2015-06-10_21:00:00 wrfinput_d02_2015-06-10_21:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_21:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/real/wrfinput_d03_2015-06-10_21:00:00 wrfinput_d03_2015-06-10_21:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_21:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_21:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01_2015-06-10_21:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e001 wrfbdy_d01_2015-06-10_21:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_21:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e001 wrfinput_d02_2015-06-10_21:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_21:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e001 wrfinput_d03_2015-06-10_21:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_21:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_21:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_d01_2015-06-10_21:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e002 wrfbdy_d01_2015-06-10_21:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_21:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e002 wrfinput_d02_2015-06-10_21:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_21:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e002 wrfinput_d03_2015-06-10_21:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_21:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_21:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_d01_2015-06-10_21:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e003 wrfbdy_d01_2015-06-10_21:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_21:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e003 wrfinput_d02_2015-06-10_21:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_21:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e003 wrfinput_d03_2015-06-10_21:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_21:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_21:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_d01_2015-06-10_21:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e004 wrfbdy_d01_2015-06-10_21:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_21:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e004 wrfinput_d02_2015-06-10_21:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_21:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e004 wrfinput_d03_2015-06-10_21:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_21:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_21:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_d01_2015-06-10_21:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e005 wrfbdy_d01_2015-06-10_21:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_21:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e005 wrfinput_d02_2015-06-10_21:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_21:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e005 wrfinput_d03_2015-06-10_21:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_21:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_21:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_d01_2015-06-10_21:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e006 wrfbdy_d01_2015-06-10_21:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_21:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e006 wrfinput_d02_2015-06-10_21:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_21:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e006 wrfinput_d03_2015-06-10_21:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_21:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_21:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_d01_2015-06-10_21:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e007 wrfbdy_d01_2015-06-10_21:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_21:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e007 wrfinput_d02_2015-06-10_21:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_21:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e007 wrfinput_d03_2015-06-10_21:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_21:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_21:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_d01_2015-06-10_21:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e008 wrfbdy_d01_2015-06-10_21:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_21:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e008 wrfinput_d02_2015-06-10_21:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_21:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e008 wrfinput_d03_2015-06-10_21:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_21:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_21:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e009 wrfinput_d01_2015-06-10_21:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e009 wrfbdy_d01_2015-06-10_21:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_21:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e009 wrfinput_d02_2015-06-10_21:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_21:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e009 wrfinput_d03_2015-06-10_21:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_21:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_21:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e010 wrfinput_d01_2015-06-10_21:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_bc/wrfbdy_d01_2015-06-10_21:00:00.e010 wrfbdy_d01_2015-06-10_21:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_21:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d02_2015-06-10_21:00:00.e010 wrfinput_d02_2015-06-10_21:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_21:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_met_ic/wrfinput_d03_2015-06-10_21:00:00.e010 wrfinput_d03_2015-06-10_21:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061021 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + LE_DATE=2015061022 + export LE_DATE + [[ 2015061021 -le 2015061022 ]] + echo 2015061021 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061021 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_21:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_21:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_21:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_21:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_21:00:00 wrfbiochemi_d01_2015-06-10_21:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_21:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_21:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_21:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22412 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_8726.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150176 + WRFCHEMI=wrfchemi_d02_2015-06-10_21:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_21:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_21:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_21:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_21:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_21:00:00 wrfchemi_d02_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_21:00:00 wrffirechemi_d02_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_21:00:00 wrfbiochemi_d02_2015-06-10_21:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_21:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_21:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_21:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22463 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_29720.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150177 + WRFCHEMI=wrfchemi_d03_2015-06-10_21:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_21:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_21:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_21:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_21:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_21:00:00 wrfchemi_d03_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_21:00:00 wrffirechemi_d03_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_21:00:00 wrfbiochemi_d03_2015-06-10_21:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_21:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_21:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_21:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22530 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_11697.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150179 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061022 ]] + echo 2015061022 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061021 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_22:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_22:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_22:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_21:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_21:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_22:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_22:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_22:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22881 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_22282.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150180 + WRFCHEMI=wrfchemi_d02_2015-06-10_22:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_22:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_22:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_21:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_21:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_22:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_22:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_22:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=22933 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_17826.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150181 + WRFCHEMI=wrfchemi_d03_2015-06-10_22:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_22:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_22:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_21:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_21:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_22:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_22:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_22:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=23000 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_17203.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150183 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061022 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_21:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_21:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_21:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 21 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=21 + export L_HH + D_DATE=2015061021 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=21 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=21 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=20 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=21 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061021.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061021.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 21 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=21 + export L_HH + D_DATE=2015061021 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=21 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=21 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=20 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=21 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061021.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061021.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/prepbufr_met_obs/obs_seq_prep_2015061021.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/prepbufr_met_obs/obs_seq_prep_2015061021.out ./obs_seq_MET_2015061021.out + FILE_LIST[1]=obs_seq_MET_2015061021.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/airnow_o3_obs/obs_seq_airnow_o3_2015061021.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/airnow_o3_obs/obs_seq_airnow_o3_2015061021.out ./obs_seq_AIR_O3_2015061021.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061021.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/tolnet_o3_obs/obs_seq_tolnet_o3_2015061021.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/tolnet_o3_obs/obs_seq_tolnet_o3_2015061021.out ./obs_seq_TOL_O3_2015061021.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061021.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061021.out\',\'obs_seq_AIR_O3_2015061021.out\',\'obs_seq_TOL_O3_2015061021.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=73800 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=77400 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 73800, last_obs_days = 151370, last_obs_seconds = 77400, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 8 34 57 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=73800 which is Gregorian day: 2015 Jun 10 20:30:00 Excluding observations after: day=151370, sec=77400 which is Gregorian day: 2015 Jun 10 21:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061021.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 2908 Number of obs really inserted : 2908 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061021.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 2908 Number of obs to be inserted : 955 Number of obs really inserted : 955 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_TOL_O3_2015061021.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: TOLNET observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: TOLNET QC index -------------- Obs seq file # : 3 Number of obs in previous seq : 3863 Number of obs to be inserted : 605 Number of obs really inserted : 605 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 4468 Actual number of obs in the new seq file : 4468 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=73980 Gregorian day: 2015 Jun 10 20:33:00 Last obs time: day=151370, sec=77400 Gregorian day: 2015 Jun 10 21:30:00 Number of obs processed : 4468 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 79 obs RADIOSONDE_V_WIND_COMPONENT 79 obs RADIOSONDE_TEMPERATURE 49 obs RADIOSONDE_SPECIFIC_HUMIDITY 48 obs AIRCRAFT_TEMPERATURE 2 obs MARINE_SFC_U_WIND_COMPONENT 443 obs MARINE_SFC_V_WIND_COMPONENT 443 obs MARINE_SFC_TEMPERATURE 487 obs MARINE_SFC_SPECIFIC_HUMIDITY 92 obs LAND_SFC_U_WIND_COMPONENT 133 obs LAND_SFC_V_WIND_COMPONENT 133 obs LAND_SFC_TEMPERATURE 136 obs LAND_SFC_SPECIFIC_HUMIDITY 125 obs RADIOSONDE_SURFACE_ALTIMETER 1 obs MARINE_SFC_ALTIMETER 522 obs LAND_SFC_ALTIMETER 136 obs AIRNOW_O3 955 obs TOLNET_O3 605 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 8 34 57 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061021.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_21:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_21:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_21:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_21:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_21:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73800, last_obs_days = 151370, last_obs_seconds = 77400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 21, 0, 0, last_bin_center = 2015, 6, 10, 21, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 73800, last_obs_days = 151370, last_obs_seconds = 77400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 73800, last_obs_days = 151370, last_obs_seconds = 77400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 79200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/combine_obs/obs_seq_comb_2015061021.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 75600 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150194 + mv obs_seq.new obs_seq_comb_filtered_2015061021.out + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061022 + export CYCLE_DATE + [[ 2015061022 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061022 + export DATE + echo 2015061022 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061022 + YY=15 + export YY + cut -c5-6 + echo 2015061022 + MM=06 + export MM + cut -c7-8 + echo 2015061022 + DD=10 + export DD + cut -c9-10 + echo 2015061022 + HH=22 + export HH + DATE_SHORT=15061022 + export DATE_SHORT + FILE_DATE=2015-06-10_22:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 -1 + 2> /dev/null + PAST_DATE=2015061021 + export PAST_DATE + cut -c1-4 + echo 2015061021 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061021 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061021 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061021 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061021 + PAST_HH=21 + export PAST_HH + PAST_FILE_DATE=2015-06-10_21:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +1 + 2> /dev/null + NEXT_DATE=2015061023 + export NEXT_DATE + cut -c1-4 + echo 2015061023 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061023 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061023 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061023 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061023 + NEXT_HH=23 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_23:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=22 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 22 + 0 )) + [[ 22 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=22 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 22 + 0 )) + D_DATE=2015061022 + export D_DATE + echo 2015061022 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 79200 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=79200 + export SEC_GREG + echo 2015061023 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 82800 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=82800 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 -30m + 2> /dev/null + ASIM_MIN_DATE=201506102130 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506102130 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506102130 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506102130 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506102130 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506102130 + ASIM_MIN_HH=21 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +30m + 2> /dev/null + ASIM_MAX_DATE=201506102230 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506102230 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506102230 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506102230 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506102230 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506102230 + ASIM_MAX_HH=22 + export ASIM_MAX_HH + echo 201506102130 201506102130 + echo 201506102130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 77400 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=77400 + export ASIM_MIN_SEC_GREG + echo 201506102230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 81000 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=81000 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061022 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061022 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + END_DATE=2015061023 + export END_DATE + cut -c1-4 + echo 2015061022 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061022 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061022 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061022 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061022 + START_HOUR=22 + export START_HOUR + START_FILE_DATE=2015-06-10_22:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061023 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061023 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061023 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061023 + END_HOUR=23 + export END_HOUR + END_FILE_DATE=2015-06-10_23:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061021/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=22,22,22 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=23,23,23 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_21:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_22:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506102130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 77400 + (( temp[1]=77400+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=77401 + export NL_FIRST_OBS_SECONDS + echo 201506102230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 81000 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=81000 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061022 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=22 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=22 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=82800 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 -30m + 2> /dev/null + ASIM_DATE_MIN=201506102130 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +30m + 2> /dev/null + ASIM_DATE_MAX=201506102230 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506102130 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506102130 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506102130 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506102130 + ASIM_MN_HH=21 + export ASIM_MN_HH + cut -c1-4 + echo 201506102230 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506102230 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506102230 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506102230 + ASIM_MX_HH=22 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + E_DATE=2015061023 + export E_DATE + cut -c1-4 + echo 2015061023 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061023 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061023 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061023 + E_HH=23 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061022 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_END_DATE=2015061023 + export L_END_DATE + cut -c1-4 + echo 2015061022 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061022 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061022 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061022 + L_START_HOUR=22 + export L_START_HOUR + cut -c1-4 + echo 2015061023 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061023 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061023 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061023 + L_END_HOUR=23 + export L_END_HOUR + cut -c1-4 + echo 2015061022 + cut -c1-4 + echo 2015061022 + cut -c1-4 + echo 2015061022 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061022 + cut -c5-6 + echo 2015061022 + cut -c5-6 + echo 2015061022 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061022 + cut -c7-8 + echo 2015061022 + cut -c7-8 + echo 2015061022 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061022 + cut -c9-10 + echo 2015061022 + cut -c9-10 + echo 2015061022 + NL_START_HOUR=22,22,22 + export NL_START_HOUR + cut -c1-4 + echo 2015061023 + cut -c1-4 + echo 2015061023 + cut -c1-4 + echo 2015061023 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061023 + cut -c5-6 + echo 2015061023 + cut -c5-6 + echo 2015061023 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061023 + cut -c7-8 + echo 2015061023 + cut -c7-8 + echo 2015061023 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061023 + cut -c9-10 + echo 2015061023 + cut -c9-10 + echo 2015061023 + NL_END_HOUR=23,23,23 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_22:00:00\',\'2015-06-10_22:00:00\',\'2015-06-10_22:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_23:00:00\',\'2015-06-10_23:00:00\',\'2015-06-10_23:00:00\'' + export NL_END_DATE + P_DATE=2015061022 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + P_END_DATE=2015061023 + export P_END_DATE + [[ 2015061022 -le 2015061023 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_22:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_21:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_22:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24788 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6439.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150195 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24802 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_624.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150196 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24816 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14985.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150197 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24843 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4328.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150198 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24856 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20570.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150199 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24870 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7691.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150200 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24897 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14107.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150201 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24911 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2024.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150202 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24924 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12578.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150203 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24951 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29558.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150204 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24966 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8495.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150205 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24979 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20877.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150206 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25006 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6608.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150207 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25020 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26315.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150208 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25034 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13201.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150209 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25061 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31353.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150210 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25137 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29115.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150211 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25156 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21670.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150212 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25242 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8774.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150213 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25255 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11582.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150214 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25268 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10655.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150215 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25296 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21752.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150216 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25309 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26905.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150217 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25323 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_968.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150218 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25351 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20731.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150219 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25364 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12286.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150220 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25378 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29960.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150221 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25405 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20564.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150222 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25418 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7964.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150223 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_22:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_22:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:30:00', / &wrfvar22 time_window_max = '2015-06-10_22:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_22:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25432 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30803.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150224 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + sleep 45 + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e001 cp: cannot stat ‘wrfda_cr_1/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_1/wrfvar_output ]] + sleep 45 + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e001 cp: cannot stat ‘wrfda_mr_1/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_1/wrfvar_output ]] + sleep 45 + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e001 cp: cannot stat ‘wrfda_fr_1/wrfvar_output’: No such file or directory + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + sleep 45 + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e002 cp: cannot stat ‘wrfda_cr_2/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_2/wrfvar_output ]] + sleep 45 + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e002 cp: cannot stat ‘wrfda_mr_2/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_2/wrfvar_output ]] + sleep 45 + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e002 cp: cannot stat ‘wrfda_fr_2/wrfvar_output’: No such file or directory + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + sleep 45 + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e003 cp: cannot stat ‘wrfda_cr_3/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_3/wrfvar_output ]] + sleep 45 + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e003 cp: cannot stat ‘wrfda_mr_3/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_3/wrfvar_output ]] + sleep 45 + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e003 cp: cannot stat ‘wrfda_fr_3/wrfvar_output’: No such file or directory + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + sleep 45 + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e004 cp: cannot stat ‘wrfda_cr_4/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_4/wrfvar_output ]] + sleep 45 + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e004 cp: cannot stat ‘wrfda_mr_4/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_4/wrfvar_output ]] + sleep 45 + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e004 cp: cannot stat ‘wrfda_fr_4/wrfvar_output’: No such file or directory + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + sleep 45 + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e005 cp: cannot stat ‘wrfda_cr_5/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_5/wrfvar_output ]] + sleep 45 + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e005 cp: cannot stat ‘wrfda_mr_5/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_5/wrfvar_output ]] + sleep 45 + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e005 cp: cannot stat ‘wrfda_fr_5/wrfvar_output’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + sleep 45 + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e006 cp: cannot stat ‘wrfda_cr_6/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_6/wrfvar_output ]] + sleep 45 + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e006 cp: cannot stat ‘wrfda_mr_6/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_6/wrfvar_output ]] + sleep 45 + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e006 cp: cannot stat ‘wrfda_fr_6/wrfvar_output’: No such file or directory + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + sleep 45 + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e007 cp: cannot stat ‘wrfda_cr_7/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_7/wrfvar_output ]] + sleep 45 + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e007 cp: cannot stat ‘wrfda_mr_7/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_7/wrfvar_output ]] + sleep 45 + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e007 cp: cannot stat ‘wrfda_fr_7/wrfvar_output’: No such file or directory + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + sleep 45 + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e008 cp: cannot stat ‘wrfda_cr_8/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_8/wrfvar_output ]] + sleep 45 + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e008 cp: cannot stat ‘wrfda_mr_8/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_8/wrfvar_output ]] + sleep 45 + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e008 cp: cannot stat ‘wrfda_fr_8/wrfvar_output’: No such file or directory + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + sleep 45 + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e009 cp: cannot stat ‘wrfda_cr_9/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_9/wrfvar_output ]] + sleep 45 + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e009 cp: cannot stat ‘wrfda_mr_9/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_9/wrfvar_output ]] + sleep 45 + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e009 cp: cannot stat ‘wrfda_fr_9/wrfvar_output’: No such file or directory + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + sleep 45 + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_22:00:00.e010 cp: cannot stat ‘wrfda_cr_10/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_10/wrfvar_output ]] + sleep 45 + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_22:00:00.e010 cp: cannot stat ‘wrfda_mr_10/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_10/wrfvar_output ]] + sleep 45 + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_22:00:00.e010 cp: cannot stat ‘wrfda_fr_10/wrfvar_output’: No such file or directory + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + P_DATE=2015061023 + export P_DATE + [[ 2015061023 -le 2015061023 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_23:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_22:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_23:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_6439.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29452 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12261.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150259 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_624.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29466 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26263.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150260 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_14985.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29479 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10310.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150261 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_4328.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29507 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10995.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150262 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_20570.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29521 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5201.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150263 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_7691.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29534 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17238.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150264 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_14107.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29562 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28719.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150265 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_2024.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29576 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15012.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150266 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_12578.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29589 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3773.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150267 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_29558.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29617 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14263.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150269 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_8495.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29630 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3323.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150270 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_20877.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29644 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5046.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150271 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_6608.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29672 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19136.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150272 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_26315.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29686 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10503.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150273 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_13201.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29701 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30302.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150274 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_31353.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29728 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24651.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150275 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_29115.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29742 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27658.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150276 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_21670.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29756 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6679.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150277 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_8774.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29783 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18985.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150279 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_11582.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29797 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2187.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150280 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_10655.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29810 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16801.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150281 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_21752.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29838 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12739.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150282 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_26905.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29853 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18117.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150283 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_968.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29867 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7937.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150284 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_20731.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29894 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11989.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150285 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_12286.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29908 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14605.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150286 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_29960.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29921 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12985.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150288 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_20564.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -f hhddmmyycc + NL_SEED_ARRAY1=2210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061022 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + [[ 22 -ge 00 ]] + [[ 22 -lt 06 ]] + [[ 22 -ge 06 ]] + [[ 22 -lt 12 ]] + [[ 22 -ge 12 ]] + [[ 22 -lt 18 ]] + [[ 22 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29949 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6505.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150289 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_7964.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29963 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15796.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150290 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_30803.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 22,22,22, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 23,23,23, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29977 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32376.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150291 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + sleep 45 + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e001 cp: cannot stat ‘wrfda_cr_1/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_1/wrfvar_output ]] + sleep 45 + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e001 cp: cannot stat ‘wrfda_mr_1/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_1/wrfvar_output ]] + sleep 45 + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e001 cp: cannot stat ‘wrfda_fr_1/wrfvar_output’: No such file or directory + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + sleep 45 + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e002 cp: cannot stat ‘wrfda_cr_2/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_2/wrfvar_output ]] + sleep 45 + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e002 cp: cannot stat ‘wrfda_mr_2/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_2/wrfvar_output ]] + sleep 45 + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e002 cp: cannot stat ‘wrfda_fr_2/wrfvar_output’: No such file or directory + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + sleep 45 + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e003 cp: cannot stat ‘wrfda_cr_3/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_3/wrfvar_output ]] + sleep 45 + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e003 cp: cannot stat ‘wrfda_mr_3/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_3/wrfvar_output ]] + sleep 45 + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e003 cp: cannot stat ‘wrfda_fr_3/wrfvar_output’: No such file or directory + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + sleep 45 + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e004 cp: cannot stat ‘wrfda_cr_4/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_4/wrfvar_output ]] + sleep 45 + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e004 cp: cannot stat ‘wrfda_mr_4/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_4/wrfvar_output ]] + sleep 45 + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e004 cp: cannot stat ‘wrfda_fr_4/wrfvar_output’: No such file or directory + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + sleep 45 + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e005 cp: cannot stat ‘wrfda_cr_5/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_5/wrfvar_output ]] + sleep 45 + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e005 cp: cannot stat ‘wrfda_mr_5/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_5/wrfvar_output ]] + sleep 45 + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e005 cp: cannot stat ‘wrfda_fr_5/wrfvar_output’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + sleep 45 + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e006 cp: cannot stat ‘wrfda_cr_6/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_6/wrfvar_output ]] + sleep 45 + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e006 cp: cannot stat ‘wrfda_mr_6/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_6/wrfvar_output ]] + sleep 45 + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e006 cp: cannot stat ‘wrfda_fr_6/wrfvar_output’: No such file or directory + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + sleep 45 + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e007 cp: cannot stat ‘wrfda_cr_7/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_7/wrfvar_output ]] + sleep 45 + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e007 cp: cannot stat ‘wrfda_mr_7/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_7/wrfvar_output ]] + sleep 45 + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e007 cp: cannot stat ‘wrfda_fr_7/wrfvar_output’: No such file or directory + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + sleep 45 + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e008 cp: cannot stat ‘wrfda_cr_8/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_8/wrfvar_output ]] + sleep 45 + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e008 cp: cannot stat ‘wrfda_mr_8/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_8/wrfvar_output ]] + sleep 45 + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e008 cp: cannot stat ‘wrfda_fr_8/wrfvar_output’: No such file or directory + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + sleep 45 + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e009 cp: cannot stat ‘wrfda_cr_9/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_9/wrfvar_output ]] + sleep 45 + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e009 cp: cannot stat ‘wrfda_mr_9/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_9/wrfvar_output ]] + sleep 45 + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e009 cp: cannot stat ‘wrfda_fr_9/wrfvar_output’: No such file or directory + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + sleep 45 + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e010 cp: cannot stat ‘wrfda_cr_10/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_10/wrfvar_output ]] + sleep 45 + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e010 cp: cannot stat ‘wrfda_mr_10/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_10/wrfvar_output ]] + sleep 45 + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e010 cp: cannot stat ‘wrfda_fr_10/wrfvar_output’: No such file or directory + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + P_DATE=2015061100 + export P_DATE + [[ 2015061100 -le 2015061023 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 22, 0, 0, last_bin_center = 2015, 6, 10, 22, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061022 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_END_DATE=2015061023 + export L_END_DATE + TRANDOM=23949 + [[ 2015061022 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + NEXT_L_DATE=2015061023 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_23:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3749 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5259.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150314 + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_22:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 22, 0, 0, last_bin_center = 2015, 6, 10, 22, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061022 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_END_DATE=2015061023 + export L_END_DATE + TRANDOM=23949 + [[ 2015061022 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + NEXT_L_DATE=2015061023 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_23:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3962 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_26629.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150315 + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_22:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 22, 0, 0, last_bin_center = 2015, 6, 10, 22, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061022 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_END_DATE=2015061023 + export L_END_DATE + TRANDOM=23949 + [[ 2015061022 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + NEXT_L_DATE=2015061023 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_23:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4184 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16530.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150316 + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_22:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 22, 0, 0, last_bin_center = 2015, 6, 10, 22, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061022 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_END_DATE=2015061023 + export L_END_DATE + TRANDOM=23949 + [[ 2015061022 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + NEXT_L_DATE=2015061023 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_23:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4395 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5823.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150317 + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_22:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 22, 0, 0, last_bin_center = 2015, 6, 10, 22, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061022 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_END_DATE=2015061023 + export L_END_DATE + TRANDOM=23949 + [[ 2015061022 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + NEXT_L_DATE=2015061023 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_23:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4611 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_4465.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150318 + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_22:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 22, 0, 0, last_bin_center = 2015, 6, 10, 22, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061022 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_END_DATE=2015061023 + export L_END_DATE + TRANDOM=23949 + [[ 2015061022 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + NEXT_L_DATE=2015061023 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_23:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4825 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18075.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150319 + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_22:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 22, 0, 0, last_bin_center = 2015, 6, 10, 22, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061022 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_END_DATE=2015061023 + export L_END_DATE + TRANDOM=23949 + [[ 2015061022 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + NEXT_L_DATE=2015061023 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_23:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5036 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9300.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150320 + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_22:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 22, 0, 0, last_bin_center = 2015, 6, 10, 22, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061022 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_END_DATE=2015061023 + export L_END_DATE + TRANDOM=23949 + [[ 2015061022 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + NEXT_L_DATE=2015061023 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_23:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5247 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7343.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150321 + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_22:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 22, 0, 0, last_bin_center = 2015, 6, 10, 22, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061022 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_END_DATE=2015061023 + export L_END_DATE + TRANDOM=23949 + [[ 2015061022 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + NEXT_L_DATE=2015061023 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_23:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5459 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19423.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150322 + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_22:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 22, 0, 0, last_bin_center = 2015, 6, 10, 22, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061021.out','obs_seq_AIR_O3_2015061021.out','obs_seq_TOL_O3_2015061021.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77401, last_obs_days = 151370, last_obs_seconds = 81000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061022 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_END_DATE=2015061023 + export L_END_DATE + TRANDOM=23949 + [[ 2015061022 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + NEXT_L_DATE=2015061023 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_23:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5796 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_3914.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150323 + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -lt 2015061023 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_22:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_22:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfinput_d02_2015-06-10_22:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfinput_d03_2015-06-10_22:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfinput_d02_2015-06-10_22:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfinput_d03_2015-06-10_22:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi + L_DATE=2015061022 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + LE_DATE=2015061023 + export LE_DATE + [[ 2015061022 -le 2015061023 ]] + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_22:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_22:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_22:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_22:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_22:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061023 ]] + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_23:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_23:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_23:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_23:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_23:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061023 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061022 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150324 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=22 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_22:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_22:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfinput_d01_2015-06-10_22:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 ./. + mv wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01_2015-06-10_22:00:00.e000 + mv wrfbdy_d01_2015-06-10_22:00:00 wrfbdy_d01_2015-06-10_22:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5942 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_22:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.5942 rm -f tmp.5942 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_22:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_22:00:00.e000 set files = ( wrfinput_d01_2015-06-10_22:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_22:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_22:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_22:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_22:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_22:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_22:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_22:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_22:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_22:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_22:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6010 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_22:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.6010 rm -f tmp.6010 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_22:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_22:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_22:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_22:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.6010 rm -f tmp.6010 if ( wrfinput_d01_2015-06-10_22:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_22:00:00.e000 echo wrfinput_d01_2015-06-10_22:00:00.e000 wrfinput_d01_2015-06-10_22:00:00.e000 ln -s wrfinput_d01_2015-06-10_22:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_22:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_22:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_22:00:00.e000 wrfinput_d01_2015-06-10_22:00:00 + mv wrfbdy_d01_2015-06-10_22:00:00.e000 wrfbdy_d01_2015-06-10_22:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=22 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_22:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_22:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e001 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e001’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6095 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 set line1 = `head -1 tmp.$$` head -1 tmp.6095 rm -f tmp.6095 if ( 001 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6159 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_22:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.6159 rm -f tmp.6159 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_22:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_22:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_22:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_22:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.6159 rm -f tmp.6159 if ( wrfinput_d01_2015-06-10_22:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_22:00:00 echo wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01_2015-06-10_22:00:00 ln -s wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_22:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_22:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_22:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_22:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e002 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e002’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6240 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 set line1 = `head -1 tmp.$$` head -1 tmp.6240 rm -f tmp.6240 if ( 002 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6304 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_22:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.6304 rm -f tmp.6304 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_22:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_22:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_22:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_22:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.6304 rm -f tmp.6304 if ( wrfinput_d01_2015-06-10_22:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_22:00:00 echo wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01_2015-06-10_22:00:00 ln -s wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_22:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_22:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_22:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_22:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e003 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e003’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6386 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 set line1 = `head -1 tmp.$$` head -1 tmp.6386 rm -f tmp.6386 if ( 003 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6450 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_22:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.6450 rm -f tmp.6450 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_22:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_22:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_22:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_22:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.6450 rm -f tmp.6450 if ( wrfinput_d01_2015-06-10_22:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_22:00:00 echo wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01_2015-06-10_22:00:00 ln -s wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_22:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_22:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_22:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_22:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e004 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e004’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6532 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 set line1 = `head -1 tmp.$$` head -1 tmp.6532 rm -f tmp.6532 if ( 004 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6595 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_22:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.6595 rm -f tmp.6595 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_22:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_22:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_22:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_22:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.6595 rm -f tmp.6595 if ( wrfinput_d01_2015-06-10_22:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_22:00:00 echo wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01_2015-06-10_22:00:00 ln -s wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_22:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_22:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_22:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_22:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e005 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e005’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6677 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 set line1 = `head -1 tmp.$$` head -1 tmp.6677 rm -f tmp.6677 if ( 005 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6741 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_22:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.6741 rm -f tmp.6741 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_22:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_22:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_22:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_22:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.6741 rm -f tmp.6741 if ( wrfinput_d01_2015-06-10_22:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_22:00:00 echo wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01_2015-06-10_22:00:00 ln -s wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_22:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_22:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_22:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_22:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e006 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e006’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6823 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 set line1 = `head -1 tmp.$$` head -1 tmp.6823 rm -f tmp.6823 if ( 006 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6887 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_22:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.6887 rm -f tmp.6887 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_22:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_22:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_22:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_22:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.6887 rm -f tmp.6887 if ( wrfinput_d01_2015-06-10_22:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_22:00:00 echo wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01_2015-06-10_22:00:00 ln -s wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_22:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_22:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_22:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_22:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e007 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e007’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6969 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 set line1 = `head -1 tmp.$$` head -1 tmp.6969 rm -f tmp.6969 if ( 007 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7033 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_22:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.7033 rm -f tmp.7033 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_22:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_22:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_22:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_22:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.7033 rm -f tmp.7033 if ( wrfinput_d01_2015-06-10_22:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_22:00:00 echo wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01_2015-06-10_22:00:00 ln -s wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_22:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_22:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_22:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_22:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e008 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e008’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7119 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 set line1 = `head -1 tmp.$$` head -1 tmp.7119 rm -f tmp.7119 if ( 008 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7182 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_22:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.7182 rm -f tmp.7182 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_22:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_22:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_22:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_22:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.7182 rm -f tmp.7182 if ( wrfinput_d01_2015-06-10_22:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_22:00:00 echo wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01_2015-06-10_22:00:00 ln -s wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_22:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_22:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_22:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_22:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e009 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e009’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7265 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 set line1 = `head -1 tmp.$$` head -1 tmp.7265 rm -f tmp.7265 if ( 009 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7329 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_22:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.7329 rm -f tmp.7329 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_22:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_22:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_22:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_22:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.7329 rm -f tmp.7329 if ( wrfinput_d01_2015-06-10_22:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_22:00:00 echo wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01_2015-06-10_22:00:00 ln -s wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_22:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_22:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_22:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_22:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e010 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e010’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7413 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 set line1 = `head -1 tmp.$$` head -1 tmp.7413 rm -f tmp.7413 if ( 010 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7477 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_22:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.7477 rm -f tmp.7477 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_22:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_22:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_22:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_22:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.7477 rm -f tmp.7477 if ( wrfinput_d01_2015-06-10_22:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_22:00:00 echo wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01_2015-06-10_22:00:00 ln -s wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_22:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_22:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_22:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_22:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_22:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150325 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=22 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_22:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfinput_d02_2015-06-10_22:00:00 ./. + mv wrfinput_d02_2015-06-10_22:00:00 wrfinput_d02_2015-06-10_22:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7603 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_22:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.7603 rm -f tmp.7603 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_22:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_22:00:00.e000 set files = ( wrfinput_d02_2015-06-10_22:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_22:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_22:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_22:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_22:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_22:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_22:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_22:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_22:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_22:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_22:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_22:00:00.e000 wrfinput_d02_2015-06-10_22:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=22 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_22:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e001 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e001’: No such file or directory + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7677 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 set line1 = `head -1 tmp.$$` head -1 tmp.7677 rm -f tmp.7677 if ( 001 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_22:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e002 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e002’: No such file or directory + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7745 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 set line1 = `head -1 tmp.$$` head -1 tmp.7745 rm -f tmp.7745 if ( 002 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_22:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e003 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e003’: No such file or directory + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7812 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 set line1 = `head -1 tmp.$$` head -1 tmp.7812 rm -f tmp.7812 if ( 003 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_22:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e004 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e004’: No such file or directory + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7880 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 set line1 = `head -1 tmp.$$` head -1 tmp.7880 rm -f tmp.7880 if ( 004 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_22:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e005 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e005’: No such file or directory + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7947 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 set line1 = `head -1 tmp.$$` head -1 tmp.7947 rm -f tmp.7947 if ( 005 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_22:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e006 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e006’: No such file or directory + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8015 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 set line1 = `head -1 tmp.$$` head -1 tmp.8015 rm -f tmp.8015 if ( 006 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_22:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e007 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e007’: No such file or directory + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8084 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 set line1 = `head -1 tmp.$$` head -1 tmp.8084 rm -f tmp.8084 if ( 007 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_22:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e008 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e008’: No such file or directory + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8152 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 set line1 = `head -1 tmp.$$` head -1 tmp.8152 rm -f tmp.8152 if ( 008 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_22:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e009 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e009’: No such file or directory + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8220 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 set line1 = `head -1 tmp.$$` head -1 tmp.8220 rm -f tmp.8220 if ( 009 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_22:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e010 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e010’: No such file or directory + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8288 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 set line1 = `head -1 tmp.$$` head -1 tmp.8288 rm -f tmp.8288 if ( 010 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_07:00:00.nc 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/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150326 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=22 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_22:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfinput_d03_2015-06-10_22:00:00 ./. + mv wrfinput_d03_2015-06-10_22:00:00 wrfinput_d03_2015-06-10_22:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8512 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_22:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.8512 rm -f tmp.8512 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_22:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_22:00:00.e000 set files = ( wrfinput_d03_2015-06-10_22:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_22:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_22:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_22:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_22:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_22:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_22:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_22:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_22:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_22:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_22:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_22:00:00.e000 wrfinput_d03_2015-06-10_22:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=22 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_22:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e001 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e001’: No such file or directory + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8586 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8586 rm -f tmp.8586 if ( 001 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_22:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e002 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e002’: No such file or directory + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8655 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8655 rm -f tmp.8655 if ( 002 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_22:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e003 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e003’: No such file or directory + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8722 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8722 rm -f tmp.8722 if ( 003 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_22:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e004 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e004’: No such file or directory + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8790 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 set line1 = `head -1 tmp.$$` head -1 tmp.8790 rm -f tmp.8790 if ( 004 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_22:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e005 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e005’: No such file or directory + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8858 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 set line1 = `head -1 tmp.$$` head -1 tmp.8858 rm -f tmp.8858 if ( 005 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_22:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e006 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e006’: No such file or directory + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8926 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 set line1 = `head -1 tmp.$$` head -1 tmp.8926 rm -f tmp.8926 if ( 006 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_22:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e007 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e007’: No such file or directory + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8994 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 set line1 = `head -1 tmp.$$` head -1 tmp.8994 rm -f tmp.8994 if ( 007 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_22:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e008 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e008’: No such file or directory + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.9061 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9061 rm -f tmp.9061 if ( 008 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_22:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e009 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e009’: No such file or directory + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.9129 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9129 rm -f tmp.9129 if ( 009 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_22:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e010 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e010’: No such file or directory + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.9196 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9196 rm -f tmp.9196 if ( 010 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_22:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_22:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01_2015-06-10_22:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfbdy_d01_2015-06-10_22:00:00 wrfbdy_d01_2015-06-10_22:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_22:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfinput_d02_2015-06-10_22:00:00 wrfinput_d02_2015-06-10_22:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_22:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/real/wrfinput_d03_2015-06-10_22:00:00 wrfinput_d03_2015-06-10_22:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_22:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_22:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e001 wrfinput_d01_2015-06-10_22:00:00.e001 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e001 wrfbdy_d01_2015-06-10_22:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_22:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e001 wrfinput_d02_2015-06-10_22:00:00.e001 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_22:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e001 wrfinput_d03_2015-06-10_22:00:00.e001 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_22:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_22:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e002 wrfinput_d01_2015-06-10_22:00:00.e002 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e002 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e002 wrfbdy_d01_2015-06-10_22:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_22:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e002 wrfinput_d02_2015-06-10_22:00:00.e002 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e002 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_22:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e002 wrfinput_d03_2015-06-10_22:00:00.e002 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e002 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_22:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_22:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e003 wrfinput_d01_2015-06-10_22:00:00.e003 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e003 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e003 wrfbdy_d01_2015-06-10_22:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_22:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e003 wrfinput_d02_2015-06-10_22:00:00.e003 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e003 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_22:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e003 wrfinput_d03_2015-06-10_22:00:00.e003 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e003 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_22:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_22:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e004 wrfinput_d01_2015-06-10_22:00:00.e004 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e004 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e004 wrfbdy_d01_2015-06-10_22:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_22:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e004 wrfinput_d02_2015-06-10_22:00:00.e004 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e004 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_22:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e004 wrfinput_d03_2015-06-10_22:00:00.e004 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e004 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_22:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_22:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e005 wrfinput_d01_2015-06-10_22:00:00.e005 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e005 wrfbdy_d01_2015-06-10_22:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_22:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e005 wrfinput_d02_2015-06-10_22:00:00.e005 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_22:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e005 wrfinput_d03_2015-06-10_22:00:00.e005 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_22:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_22:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e006 wrfinput_d01_2015-06-10_22:00:00.e006 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e006 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e006 wrfbdy_d01_2015-06-10_22:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_22:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e006 wrfinput_d02_2015-06-10_22:00:00.e006 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e006 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_22:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e006 wrfinput_d03_2015-06-10_22:00:00.e006 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e006 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_22:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_22:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e007 wrfinput_d01_2015-06-10_22:00:00.e007 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e007 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e007 wrfbdy_d01_2015-06-10_22:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_22:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e007 wrfinput_d02_2015-06-10_22:00:00.e007 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e007 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_22:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e007 wrfinput_d03_2015-06-10_22:00:00.e007 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e007 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_22:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_22:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e008 wrfinput_d01_2015-06-10_22:00:00.e008 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e008 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e008 wrfbdy_d01_2015-06-10_22:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_22:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e008 wrfinput_d02_2015-06-10_22:00:00.e008 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e008 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_22:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e008 wrfinput_d03_2015-06-10_22:00:00.e008 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e008 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_22:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_22:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e009 wrfinput_d01_2015-06-10_22:00:00.e009 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e009 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e009 wrfbdy_d01_2015-06-10_22:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_22:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e009 wrfinput_d02_2015-06-10_22:00:00.e009 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e009 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_22:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e009 wrfinput_d03_2015-06-10_22:00:00.e009 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e009 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_22:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_22:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e010 wrfinput_d01_2015-06-10_22:00:00.e010 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d01_2015-06-10_22:00:00.e010 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_bc/wrfbdy_d01_2015-06-10_22:00:00.e010 wrfbdy_d01_2015-06-10_22:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_22:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e010 wrfinput_d02_2015-06-10_22:00:00.e010 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d02_2015-06-10_22:00:00.e010 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_22:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e010 wrfinput_d03_2015-06-10_22:00:00.e010 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_met_ic/wrfinput_d03_2015-06-10_22:00:00.e010 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061022 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + LE_DATE=2015061023 + export LE_DATE + [[ 2015061022 -le 2015061023 ]] + echo 2015061022 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061022 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_22:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_22:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_22:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_22:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_22:00:00 wrfbiochemi_d01_2015-06-10_22:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_22:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_22:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_22:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9551 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_1390.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150327 + WRFCHEMI=wrfchemi_d02_2015-06-10_22:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_22:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_22:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_22:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_22:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_22:00:00 wrfchemi_d02_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_22:00:00 wrffirechemi_d02_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_22:00:00 wrfbiochemi_d02_2015-06-10_22:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_22:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_22:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_22:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9608 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_17684.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150328 + WRFCHEMI=wrfchemi_d03_2015-06-10_22:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_22:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_22:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_22:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_22:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_22:00:00 wrfchemi_d03_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_22:00:00 wrffirechemi_d03_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_22:00:00 wrfbiochemi_d03_2015-06-10_22:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_22:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_22:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_22:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9666 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_27042.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150329 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061023 ]] + echo 2015061023 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061022 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_23:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_23:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_23:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_22:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_22:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_23:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_23:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_23:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9895 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_9603.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150330 + WRFCHEMI=wrfchemi_d02_2015-06-10_23:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_23:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_23:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_22:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_22:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_23:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_23:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_23:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10076 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_16071.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150331 + WRFCHEMI=wrfchemi_d03_2015-06-10_23:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_23:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_23:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_22:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_22:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_23:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_23:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_23:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10138 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_14892.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150332 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061023 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_22:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_22:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_22:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 22 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=22 + export L_HH + D_DATE=2015061022 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=22 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=22 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=21 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=22 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061022.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061022.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 22 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=22 + export L_HH + D_DATE=2015061022 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=22 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=22 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=21 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=22 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061022.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061022.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/prepbufr_met_obs/obs_seq_prep_2015061022.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/prepbufr_met_obs/obs_seq_prep_2015061022.out ./obs_seq_MET_2015061022.out + FILE_LIST[1]=obs_seq_MET_2015061022.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/airnow_o3_obs/obs_seq_airnow_o3_2015061022.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/airnow_o3_obs/obs_seq_airnow_o3_2015061022.out ./obs_seq_AIR_O3_2015061022.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061022.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/tolnet_o3_obs/obs_seq_tolnet_o3_2015061022.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/tolnet_o3_obs/obs_seq_tolnet_o3_2015061022.out ./obs_seq_TOL_O3_2015061022.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061022.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061022.out\',\'obs_seq_AIR_O3_2015061022.out\',\'obs_seq_TOL_O3_2015061022.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=77400 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=81000 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 77400, last_obs_days = 151370, last_obs_seconds = 81000, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 10 6 40 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=77400 which is Gregorian day: 2015 Jun 10 21:30:00 Excluding observations after: day=151370, sec=81000 which is Gregorian day: 2015 Jun 10 22:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061022.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 2698 Number of obs really inserted : 2698 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061022.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 2698 Number of obs to be inserted : 955 Number of obs really inserted : 955 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_TOL_O3_2015061022.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: TOLNET observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: TOLNET QC index -------------- Obs seq file # : 3 Number of obs in previous seq : 3653 Number of obs to be inserted : 605 Number of obs really inserted : 605 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 4258 Actual number of obs in the new seq file : 4258 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=77518 Gregorian day: 2015 Jun 10 21:31:58 Last obs time: day=151370, sec=81000 Gregorian day: 2015 Jun 10 22:30:00 Number of obs processed : 4258 --------------------------------------------------------- AIRCRAFT_TEMPERATURE 18 obs MARINE_SFC_U_WIND_COMPONENT 558 obs MARINE_SFC_V_WIND_COMPONENT 558 obs MARINE_SFC_TEMPERATURE 611 obs MARINE_SFC_SPECIFIC_HUMIDITY 152 obs LAND_SFC_U_WIND_COMPONENT 31 obs LAND_SFC_V_WIND_COMPONENT 31 obs LAND_SFC_TEMPERATURE 31 obs LAND_SFC_SPECIFIC_HUMIDITY 24 obs MARINE_SFC_ALTIMETER 653 obs LAND_SFC_ALTIMETER 31 obs AIRNOW_O3 955 obs TOLNET_O3 605 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 10 6 41 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061022.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_22:00:00.e001 wrfinput_d01 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_22:00:00.e001’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_22:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_22:00:00.e001 wrfinput_d02 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_22:00:00.e001’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_22:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_22:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_22:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77400, last_obs_days = 151370, last_obs_seconds = 81000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 22, 0, 0, last_bin_center = 2015, 6, 10, 22, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 77400, last_obs_days = 151370, last_obs_seconds = 81000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 77400, last_obs_days = 151370, last_obs_seconds = 81000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 82800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/combine_obs/obs_seq_comb_2015061022.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 79200 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150367 + mv obs_seq.new obs_seq_comb_filtered_2015061022.out mv: cannot stat ‘obs_seq.new’: No such file or directory + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061023 + export CYCLE_DATE + [[ 2015061023 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061023 + export DATE + echo 2015061023 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061023 + YY=15 + export YY + cut -c5-6 + echo 2015061023 + MM=06 + export MM + cut -c7-8 + echo 2015061023 + DD=10 + export DD + cut -c9-10 + echo 2015061023 + HH=23 + export HH + DATE_SHORT=15061023 + export DATE_SHORT + FILE_DATE=2015-06-10_23:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 -1 + 2> /dev/null + PAST_DATE=2015061022 + export PAST_DATE + cut -c1-4 + echo 2015061022 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061022 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061022 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061022 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061022 + PAST_HH=22 + export PAST_HH + PAST_FILE_DATE=2015-06-10_22:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +1 + 2> /dev/null + NEXT_DATE=2015061100 + export NEXT_DATE + cut -c1-4 + echo 2015061100 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061100 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061100 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061100 + NEXT_DD=11 + export NEXT_DD + cut -c9-10 + echo 2015061100 + NEXT_HH=00 + export NEXT_HH + NEXT_FILE_DATE=2015-06-11_00:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=23 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 23 + 0 )) + [[ 23 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=23 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 23 + 0 )) + D_DATE=2015061023 + export D_DATE + echo 2015061023 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 82800 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=82800 + export SEC_GREG + echo 2015061100 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151371 0 + NEXT_DAY_GREG=151371 + export NEXT_DAY_GREG + NEXT_SEC_GREG=0 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 -30m + 2> /dev/null + ASIM_MIN_DATE=201506102230 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506102230 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506102230 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506102230 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506102230 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506102230 + ASIM_MIN_HH=22 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +30m + 2> /dev/null + ASIM_MAX_DATE=201506102330 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506102330 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506102330 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506102330 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506102330 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506102330 + ASIM_MAX_HH=23 + export ASIM_MAX_HH + echo 201506102230 201506102230 + echo 201506102230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 81000 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=81000 + export ASIM_MIN_SEC_GREG + echo 201506102330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 84600 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=84600 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061023 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061023 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + END_DATE=2015061100 + export END_DATE + cut -c1-4 + echo 2015061023 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061023 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061023 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061023 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061023 + START_HOUR=23 + export START_HOUR + START_FILE_DATE=2015-06-10_23:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061100 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061100 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061100 + END_DAY=11 + export END_DAY + cut -c9-10 + echo 2015061100 + END_HOUR=00 + export END_HOUR + END_FILE_DATE=2015-06-11_00:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061022/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=23,23,23 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=11,11,11 + export NL_END_DAY + NL_END_HOUR=00,00,00 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_22:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_23:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506102230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 81000 + (( temp[1]=81000+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=81001 + export NL_FIRST_OBS_SECONDS + echo 201506102330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 84600 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=84600 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061023 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=23 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=23 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151371 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=0 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 -30m + 2> /dev/null + ASIM_DATE_MIN=201506102230 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +30m + 2> /dev/null + ASIM_DATE_MAX=201506102330 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506102230 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506102230 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506102230 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506102230 + ASIM_MN_HH=22 + export ASIM_MN_HH + cut -c1-4 + echo 201506102330 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506102330 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506102330 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506102330 + ASIM_MX_HH=23 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + E_DATE=2015061100 + export E_DATE + cut -c1-4 + echo 2015061100 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061100 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061100 + E_DD=11 + export E_DD + cut -c9-10 + echo 2015061100 + E_HH=00 + export E_HH + FIRE_END_DATE=2015-06-11 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061023 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + cut -c1-4 + echo 2015061023 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061023 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061023 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061023 + L_START_HOUR=23 + export L_START_HOUR + cut -c1-4 + echo 2015061100 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061100 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061100 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061100 + L_END_HOUR=00 + export L_END_HOUR + cut -c1-4 + echo 2015061023 + cut -c1-4 + echo 2015061023 + cut -c1-4 + echo 2015061023 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061023 + cut -c5-6 + echo 2015061023 + cut -c5-6 + echo 2015061023 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061023 + cut -c7-8 + echo 2015061023 + cut -c7-8 + echo 2015061023 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061023 + cut -c9-10 + echo 2015061023 + cut -c9-10 + echo 2015061023 + NL_START_HOUR=23,23,23 + export NL_START_HOUR + cut -c1-4 + echo 2015061100 + cut -c1-4 + echo 2015061100 + cut -c1-4 + echo 2015061100 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061100 + cut -c5-6 + echo 2015061100 + cut -c5-6 + echo 2015061100 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061100 + cut -c7-8 + echo 2015061100 + cut -c7-8 + echo 2015061100 + NL_END_DAY=11,11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061100 + cut -c9-10 + echo 2015061100 + cut -c9-10 + echo 2015061100 + NL_END_HOUR=00,00,00 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_23:00:00\',\'2015-06-10_23:00:00\',\'2015-06-10_23:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_00:00:00\',\'2015-06-11_00:00:00\',\'2015-06-11_00:00:00\'' + export NL_END_DATE + P_DATE=2015061023 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + P_END_DATE=2015061100 + export P_END_DATE + [[ 2015061023 -le 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_23:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_22:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_23:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11885 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10340.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150368 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11899 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24646.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150369 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11912 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21200.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150370 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11940 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26807.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150371 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11953 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11851.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150372 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11966 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6186.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150373 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=11995 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9165.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150374 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12008 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14154.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150375 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12022 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5669.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150376 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12049 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31649.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150377 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12062 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19134.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150378 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12076 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7783.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150379 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12103 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19122.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150380 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12117 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29520.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150381 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12130 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28426.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150382 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12157 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22590.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150383 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12171 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31299.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150384 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12184 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6676.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150385 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12211 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24865.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150386 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12225 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4183.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150387 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12238 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27960.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150388 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12265 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17383.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150389 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12279 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12288.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150390 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12292 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17306.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150391 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12319 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29441.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150392 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12333 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6619.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150393 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12346 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10783.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150394 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12374 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3123.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150395 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12387 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12665.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150396 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_23:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_23:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_22:30:00', / &wrfvar22 time_window_max = '2015-06-10_23:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_23:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12400 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25629.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150397 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + sleep 45 + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e001 cp: cannot stat ‘wrfda_cr_1/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_1/wrfvar_output ]] + sleep 45 + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e001 cp: cannot stat ‘wrfda_mr_1/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_1/wrfvar_output ]] + sleep 45 + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e001 cp: cannot stat ‘wrfda_fr_1/wrfvar_output’: No such file or directory + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + sleep 45 + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e002 cp: cannot stat ‘wrfda_cr_2/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_2/wrfvar_output ]] + sleep 45 + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e002 cp: cannot stat ‘wrfda_mr_2/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_2/wrfvar_output ]] + sleep 45 + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e002 cp: cannot stat ‘wrfda_fr_2/wrfvar_output’: No such file or directory + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + sleep 45 + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e003 cp: cannot stat ‘wrfda_cr_3/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_3/wrfvar_output ]] + sleep 45 + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e003 cp: cannot stat ‘wrfda_mr_3/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_3/wrfvar_output ]] + sleep 45 + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e003 cp: cannot stat ‘wrfda_fr_3/wrfvar_output’: No such file or directory + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + sleep 45 + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e004 cp: cannot stat ‘wrfda_cr_4/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_4/wrfvar_output ]] + sleep 45 + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e004 cp: cannot stat ‘wrfda_mr_4/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_4/wrfvar_output ]] + sleep 45 + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e004 cp: cannot stat ‘wrfda_fr_4/wrfvar_output’: No such file or directory + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + sleep 45 + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e005 cp: cannot stat ‘wrfda_cr_5/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_5/wrfvar_output ]] + sleep 45 + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e005 cp: cannot stat ‘wrfda_mr_5/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_5/wrfvar_output ]] + sleep 45 + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e005 cp: cannot stat ‘wrfda_fr_5/wrfvar_output’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + sleep 45 + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e006 cp: cannot stat ‘wrfda_cr_6/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_6/wrfvar_output ]] + sleep 45 + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e006 cp: cannot stat ‘wrfda_mr_6/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_6/wrfvar_output ]] + sleep 45 + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e006 cp: cannot stat ‘wrfda_fr_6/wrfvar_output’: No such file or directory + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + sleep 45 + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e007 cp: cannot stat ‘wrfda_cr_7/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_7/wrfvar_output ]] + sleep 45 + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e007 cp: cannot stat ‘wrfda_mr_7/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_7/wrfvar_output ]] + sleep 45 + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e007 cp: cannot stat ‘wrfda_fr_7/wrfvar_output’: No such file or directory + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + sleep 45 + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e008 cp: cannot stat ‘wrfda_cr_8/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_8/wrfvar_output ]] + sleep 45 + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e008 cp: cannot stat ‘wrfda_mr_8/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_8/wrfvar_output ]] + sleep 45 + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e008 cp: cannot stat ‘wrfda_fr_8/wrfvar_output’: No such file or directory + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + sleep 45 + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e009 cp: cannot stat ‘wrfda_cr_9/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_9/wrfvar_output ]] + sleep 45 + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e009 cp: cannot stat ‘wrfda_mr_9/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_9/wrfvar_output ]] + sleep 45 + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e009 cp: cannot stat ‘wrfda_fr_9/wrfvar_output’: No such file or directory + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + sleep 45 + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_23:00:00.e010 cp: cannot stat ‘wrfda_cr_10/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_10/wrfvar_output ]] + sleep 45 + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_23:00:00.e010 cp: cannot stat ‘wrfda_mr_10/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_10/wrfvar_output ]] + sleep 45 + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_23:00:00.e010 cp: cannot stat ‘wrfda_fr_10/wrfvar_output’: No such file or directory + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + P_DATE=2015061100 + export P_DATE + [[ 2015061100 -le 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-11_00:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_23:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-11_00:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_10340.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16528 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8413.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150475 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_24646.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16542 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24686.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150476 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_21200.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16557 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19730.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150477 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_26807.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16585 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25990.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150478 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_11851.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16598 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17055.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150479 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_6186.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16612 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6992.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150480 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_9165.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16639 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32644.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150481 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_14154.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16653 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1378.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150482 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_5669.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16667 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9207.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150483 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_31649.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16695 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11530.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150484 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_19134.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16709 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1927.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150485 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_7783.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16723 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4639.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150486 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_19122.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16751 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10019.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150487 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_29520.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16764 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23425.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150488 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_28426.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16778 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1732.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150489 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_22590.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16806 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30452.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150490 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_31299.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16820 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25872.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150491 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_6676.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16833 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11473.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150492 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_24865.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16861 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3517.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150493 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_4183.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16875 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26652.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150494 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_27960.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16891 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18060.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150495 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_17383.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16918 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2004.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150496 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_12288.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16932 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16860.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150497 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_17306.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16945 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5816.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150498 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_29441.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16973 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28737.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150499 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_6619.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16986 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21245.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150500 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_10783.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17000 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31995.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150501 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat da_wrfvar.exe FAILED fg index_3123.html job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr rsl.error.0000 rsl.out.0000 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -f hhddmmyycc + NL_SEED_ARRAY1=2310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061023 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + [[ 23 -ge 00 ]] + [[ 23 -lt 06 ]] + [[ 23 -ge 06 ]] + [[ 23 -lt 12 ]] + [[ 23 -ge 12 ]] + [[ 23 -lt 18 ]] + [[ 23 -ge 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17028 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17593.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150502 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat da_wrfvar.exe FAILED fg index_12665.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17042 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23278.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150503 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat da_wrfvar.exe FAILED fg index_25629.html job.ksh LANDUSE.TBL namelist.input namelist.output.da rsl.error.0000 rsl.out.0000 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 2310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 23,23,23, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 00,00,00, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17056 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13888.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150504 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + sleep 45 + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e001 cp: cannot stat ‘wrfda_cr_1/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_1/wrfvar_output ]] + sleep 45 + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e001 cp: cannot stat ‘wrfda_mr_1/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_1/wrfvar_output ]] + sleep 45 + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e001 cp: cannot stat ‘wrfda_fr_1/wrfvar_output’: No such file or directory + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + sleep 45 + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e002 cp: cannot stat ‘wrfda_cr_2/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_2/wrfvar_output ]] + sleep 45 + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e002 cp: cannot stat ‘wrfda_mr_2/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_2/wrfvar_output ]] + sleep 45 + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e002 cp: cannot stat ‘wrfda_fr_2/wrfvar_output’: No such file or directory + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + sleep 45 + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e003 cp: cannot stat ‘wrfda_cr_3/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_3/wrfvar_output ]] + sleep 45 + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e003 cp: cannot stat ‘wrfda_mr_3/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_3/wrfvar_output ]] + sleep 45 + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e003 cp: cannot stat ‘wrfda_fr_3/wrfvar_output’: No such file or directory + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + sleep 45 + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e004 cp: cannot stat ‘wrfda_cr_4/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_4/wrfvar_output ]] + sleep 45 + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e004 cp: cannot stat ‘wrfda_mr_4/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_4/wrfvar_output ]] + sleep 45 + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e004 cp: cannot stat ‘wrfda_fr_4/wrfvar_output’: No such file or directory + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + sleep 45 + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e005 cp: cannot stat ‘wrfda_cr_5/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_5/wrfvar_output ]] + sleep 45 + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e005 cp: cannot stat ‘wrfda_mr_5/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_5/wrfvar_output ]] + sleep 45 + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e005 cp: cannot stat ‘wrfda_fr_5/wrfvar_output’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + sleep 45 + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e006 cp: cannot stat ‘wrfda_cr_6/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_6/wrfvar_output ]] + sleep 45 + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e006 cp: cannot stat ‘wrfda_mr_6/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_6/wrfvar_output ]] + sleep 45 + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e006 cp: cannot stat ‘wrfda_fr_6/wrfvar_output’: No such file or directory + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + sleep 45 + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e007 cp: cannot stat ‘wrfda_cr_7/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_7/wrfvar_output ]] + sleep 45 + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e007 cp: cannot stat ‘wrfda_mr_7/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_7/wrfvar_output ]] + sleep 45 + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e007 cp: cannot stat ‘wrfda_fr_7/wrfvar_output’: No such file or directory + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + sleep 45 + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e008 cp: cannot stat ‘wrfda_cr_8/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_8/wrfvar_output ]] + sleep 45 + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e008 cp: cannot stat ‘wrfda_mr_8/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_8/wrfvar_output ]] + sleep 45 + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e008 cp: cannot stat ‘wrfda_fr_8/wrfvar_output’: No such file or directory + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + sleep 45 + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e009 cp: cannot stat ‘wrfda_cr_9/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_9/wrfvar_output ]] + sleep 45 + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e009 cp: cannot stat ‘wrfda_mr_9/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_9/wrfvar_output ]] + sleep 45 + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e009 cp: cannot stat ‘wrfda_fr_9/wrfvar_output’: No such file or directory + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + sleep 45 + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e010 cp: cannot stat ‘wrfda_cr_10/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_10/wrfvar_output ]] + sleep 45 + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e010 cp: cannot stat ‘wrfda_mr_10/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_10/wrfvar_output ]] + sleep 45 + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e010 cp: cannot stat ‘wrfda_fr_10/wrfvar_output’: No such file or directory + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + P_DATE=2015061101 + export P_DATE + [[ 2015061101 -le 2015061100 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 23, 0, 0, last_bin_center = 2015, 6, 10, 23, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061023 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=23949 + [[ 2015061023 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=21224 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_212.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150627 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_23:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 23, 0, 0, last_bin_center = 2015, 6, 10, 23, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061023 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=23949 + [[ 2015061023 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=23902 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_22392.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150640 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_23:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 23, 0, 0, last_bin_center = 2015, 6, 10, 23, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061023 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=23949 + [[ 2015061023 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24358 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15257.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150643 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_23:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 23, 0, 0, last_bin_center = 2015, 6, 10, 23, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061023 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=23949 + [[ 2015061023 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=24812 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_49.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150646 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_23:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 23, 0, 0, last_bin_center = 2015, 6, 10, 23, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061023 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=23949 + [[ 2015061023 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25264 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_10898.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150648 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_23:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 23, 0, 0, last_bin_center = 2015, 6, 10, 23, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061023 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=23949 + [[ 2015061023 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25550 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21082.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150650 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_23:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 23, 0, 0, last_bin_center = 2015, 6, 10, 23, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061023 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=23949 + [[ 2015061023 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=25961 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1998.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150651 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_23:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 23, 0, 0, last_bin_center = 2015, 6, 10, 23, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061023 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=23949 + [[ 2015061023 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26203 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9463.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150652 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_23:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 23, 0, 0, last_bin_center = 2015, 6, 10, 23, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061023 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=23949 + [[ 2015061023 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26456 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19720.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150653 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_23:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 23, 0, 0, last_bin_center = 2015, 6, 10, 23, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061022.out','obs_seq_AIR_O3_2015061022.out','obs_seq_TOL_O3_2015061022.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81001, last_obs_days = 151370, last_obs_seconds = 84600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061023 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=23949 + [[ 2015061023 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=26698 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_26579.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150654 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_23:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_23:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfinput_d02_2015-06-10_23:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfinput_d03_2015-06-10_23:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfinput_d02_2015-06-10_23:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfinput_d03_2015-06-10_23:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi + L_DATE=2015061023 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + LE_DATE=2015061100 + export LE_DATE + [[ 2015061023 -le 2015061100 ]] + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_23:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_23:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_23:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_23:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_23:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-11_00:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_00:00:00 + chmod a+rwx wrfchemi_d03_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061023 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150655 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=23 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_23:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_23:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfinput_d01_2015-06-10_23:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 ./. + mv wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01_2015-06-10_23:00:00.e000 + mv wrfbdy_d01_2015-06-10_23:00:00 wrfbdy_d01_2015-06-10_23:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.26997 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_23:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.26997 rm -f tmp.26997 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_23:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_23:00:00.e000 set files = ( wrfinput_d01_2015-06-10_23:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_23:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_23:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_23:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_23:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_23:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_23:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_23:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_23:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_23:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_23:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27065 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_23:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.27065 rm -f tmp.27065 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_23:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_23:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_23:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_23:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.27065 rm -f tmp.27065 if ( wrfinput_d01_2015-06-10_23:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_23:00:00.e000 echo wrfinput_d01_2015-06-10_23:00:00.e000 wrfinput_d01_2015-06-10_23:00:00.e000 ln -s wrfinput_d01_2015-06-10_23:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_23:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_23:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_23:00:00.e000 wrfinput_d01_2015-06-10_23:00:00 + mv wrfbdy_d01_2015-06-10_23:00:00.e000 wrfbdy_d01_2015-06-10_23:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=23 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_23:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_23:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e001 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e001’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e001 ./. + ls set1 ls: cannot access set1: No such file or directory + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a cat: set1: No such file or directory + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a cat: set1: No such file or directory + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27151 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 set line1 = `head -1 tmp.$$` head -1 tmp.27151 rm -f tmp.27151 if ( 001 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27215 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_23:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.27215 rm -f tmp.27215 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_23:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_23:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_23:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_23:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.27215 rm -f tmp.27215 if ( wrfinput_d01_2015-06-10_23:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_23:00:00 echo wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01_2015-06-10_23:00:00 ln -s wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_23:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_23:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_23:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_23:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e002 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e002’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e002 ./. + ls set2 ls: cannot access set2: No such file or directory + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a cat: set2: No such file or directory + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a cat: set2: No such file or directory + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27296 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 set line1 = `head -1 tmp.$$` head -1 tmp.27296 rm -f tmp.27296 if ( 002 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27360 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_23:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.27360 rm -f tmp.27360 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_23:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_23:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_23:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_23:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.27360 rm -f tmp.27360 if ( wrfinput_d01_2015-06-10_23:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_23:00:00 echo wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01_2015-06-10_23:00:00 ln -s wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_23:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_23:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_23:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_23:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e003 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e003’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e003 ./. + ls set3 ls: cannot access set3: No such file or directory + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a cat: set3: No such file or directory + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a cat: set3: No such file or directory + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27442 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 set line1 = `head -1 tmp.$$` head -1 tmp.27442 rm -f tmp.27442 if ( 003 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27505 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_23:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.27505 rm -f tmp.27505 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_23:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_23:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_23:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_23:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.27505 rm -f tmp.27505 if ( wrfinput_d01_2015-06-10_23:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_23:00:00 echo wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01_2015-06-10_23:00:00 ln -s wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_23:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_23:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_23:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_23:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e004 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e004’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e004 ./. + ls set4 ls: cannot access set4: No such file or directory + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a cat: set4: No such file or directory + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a cat: set4: No such file or directory + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27587 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 set line1 = `head -1 tmp.$$` head -1 tmp.27587 rm -f tmp.27587 if ( 004 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27651 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_23:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.27651 rm -f tmp.27651 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_23:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_23:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_23:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_23:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.27651 rm -f tmp.27651 if ( wrfinput_d01_2015-06-10_23:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_23:00:00 echo wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01_2015-06-10_23:00:00 ln -s wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_23:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_23:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_23:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_23:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e005 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e005’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e005 ./. + ls set5 ls: cannot access set5: No such file or directory + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a cat: set5: No such file or directory + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a cat: set5: No such file or directory + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27732 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 set line1 = `head -1 tmp.$$` head -1 tmp.27732 rm -f tmp.27732 if ( 005 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27796 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_23:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.27796 rm -f tmp.27796 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_23:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_23:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_23:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_23:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.27796 rm -f tmp.27796 if ( wrfinput_d01_2015-06-10_23:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_23:00:00 echo wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01_2015-06-10_23:00:00 ln -s wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_23:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_23:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_23:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_23:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e006 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e006’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e006 ./. + ls set6 ls: cannot access set6: No such file or directory + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a cat: set6: No such file or directory + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a cat: set6: No such file or directory + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27878 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 set line1 = `head -1 tmp.$$` head -1 tmp.27878 rm -f tmp.27878 if ( 006 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.27941 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_23:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.27941 rm -f tmp.27941 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_23:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_23:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_23:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_23:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.27941 rm -f tmp.27941 if ( wrfinput_d01_2015-06-10_23:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_23:00:00 echo wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01_2015-06-10_23:00:00 ln -s wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_23:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_23:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_23:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_23:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e007 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e007’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e007 ./. + ls set7 ls: cannot access set7: No such file or directory + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a cat: set7: No such file or directory + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a cat: set7: No such file or directory + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28023 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 set line1 = `head -1 tmp.$$` head -1 tmp.28023 rm -f tmp.28023 if ( 007 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28087 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_23:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.28087 rm -f tmp.28087 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_23:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_23:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_23:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_23:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.28087 rm -f tmp.28087 if ( wrfinput_d01_2015-06-10_23:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_23:00:00 echo wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01_2015-06-10_23:00:00 ln -s wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_23:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_23:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_23:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_23:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e008 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e008’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e008 ./. + ls set8 ls: cannot access set8: No such file or directory + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a cat: set8: No such file or directory + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a cat: set8: No such file or directory + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28168 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 set line1 = `head -1 tmp.$$` head -1 tmp.28168 rm -f tmp.28168 if ( 008 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28232 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_23:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.28232 rm -f tmp.28232 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_23:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_23:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_23:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_23:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.28232 rm -f tmp.28232 if ( wrfinput_d01_2015-06-10_23:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_23:00:00 echo wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01_2015-06-10_23:00:00 ln -s wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_23:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_23:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_23:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_23:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e009 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e009’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e009 ./. + ls set9 ls: cannot access set9: No such file or directory + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a cat: set9: No such file or directory + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a cat: set9: No such file or directory + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28314 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 set line1 = `head -1 tmp.$$` head -1 tmp.28314 rm -f tmp.28314 if ( 009 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28377 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_23:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.28377 rm -f tmp.28377 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_23:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_23:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_23:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_23:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.28377 rm -f tmp.28377 if ( wrfinput_d01_2015-06-10_23:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_23:00:00 echo wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01_2015-06-10_23:00:00 ln -s wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_23:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_23:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_23:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_23:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e010 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e010’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e010 ./. + ls set10 ls: cannot access set10: No such file or directory + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a cat: set10: No such file or directory + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a cat: set10: No such file or directory + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28464 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28464 rm -f tmp.28464 if ( 010 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.28529 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_23:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.28529 rm -f tmp.28529 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_23:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_23:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_23:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_23:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.28529 rm -f tmp.28529 if ( wrfinput_d01_2015-06-10_23:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_23:00:00 echo wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01_2015-06-10_23:00:00 ln -s wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_23:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_23:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_23:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_23:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_23:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150656 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=23 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_23:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfinput_d02_2015-06-10_23:00:00 ./. + mv wrfinput_d02_2015-06-10_23:00:00 wrfinput_d02_2015-06-10_23:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.28645 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_23:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.28645 rm -f tmp.28645 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_23:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_23:00:00.e000 set files = ( wrfinput_d02_2015-06-10_23:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_23:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_23:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_23:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_23:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_23:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_23:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_23:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_23:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_23:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_23:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_23:00:00.e000 wrfinput_d02_2015-06-10_23:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=23 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_23:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e001 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e001’: No such file or directory + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.28719 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 set line1 = `head -1 tmp.$$` head -1 tmp.28719 rm -f tmp.28719 if ( 001 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_23:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e002 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e002’: No such file or directory + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.28787 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 set line1 = `head -1 tmp.$$` head -1 tmp.28787 rm -f tmp.28787 if ( 002 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_23:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e003 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e003’: No such file or directory + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.28854 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 set line1 = `head -1 tmp.$$` head -1 tmp.28854 rm -f tmp.28854 if ( 003 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_23:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e004 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e004’: No such file or directory + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.28922 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 set line1 = `head -1 tmp.$$` head -1 tmp.28922 rm -f tmp.28922 if ( 004 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_23:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e005 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e005’: No such file or directory + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.28989 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 set line1 = `head -1 tmp.$$` head -1 tmp.28989 rm -f tmp.28989 if ( 005 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_23:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e006 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e006’: No such file or directory + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.29057 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 set line1 = `head -1 tmp.$$` head -1 tmp.29057 rm -f tmp.29057 if ( 006 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_23:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e007 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e007’: No such file or directory + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.29125 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 set line1 = `head -1 tmp.$$` head -1 tmp.29125 rm -f tmp.29125 if ( 007 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_23:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e008 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e008’: No such file or directory + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.29193 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 set line1 = `head -1 tmp.$$` head -1 tmp.29193 rm -f tmp.29193 if ( 008 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_23:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e009 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e009’: No such file or directory + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.29261 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 set line1 = `head -1 tmp.$$` head -1 tmp.29261 rm -f tmp.29261 if ( 009 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_23:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e010 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e010’: No such file or directory + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.29328 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 set line1 = `head -1 tmp.$$` head -1 tmp.29328 rm -f tmp.29328 if ( 010 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150657 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=23 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_23:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfinput_d03_2015-06-10_23:00:00 ./. + mv wrfinput_d03_2015-06-10_23:00:00 wrfinput_d03_2015-06-10_23:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.29558 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_23:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.29558 rm -f tmp.29558 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_23:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_23:00:00.e000 set files = ( wrfinput_d03_2015-06-10_23:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_23:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_23:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_23:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_23:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_23:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_23:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_23:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_23:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_23:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_23:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_23:00:00.e000 wrfinput_d03_2015-06-10_23:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=23 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_23:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e001 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e001’: No such file or directory + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.29632 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 set line1 = `head -1 tmp.$$` head -1 tmp.29632 rm -f tmp.29632 if ( 001 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_23:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e002 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e002’: No such file or directory + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.29699 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 set line1 = `head -1 tmp.$$` head -1 tmp.29699 rm -f tmp.29699 if ( 002 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_23:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e003 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e003’: No such file or directory + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.29767 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 set line1 = `head -1 tmp.$$` head -1 tmp.29767 rm -f tmp.29767 if ( 003 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_23:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e004 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e004’: No such file or directory + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.29835 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 set line1 = `head -1 tmp.$$` head -1 tmp.29835 rm -f tmp.29835 if ( 004 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_23:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e005 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e005’: No such file or directory + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.29902 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 set line1 = `head -1 tmp.$$` head -1 tmp.29902 rm -f tmp.29902 if ( 005 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_23:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e006 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e006’: No such file or directory + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.29970 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 set line1 = `head -1 tmp.$$` head -1 tmp.29970 rm -f tmp.29970 if ( 006 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_23:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e007 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e007’: No such file or directory + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.30038 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 set line1 = `head -1 tmp.$$` head -1 tmp.30038 rm -f tmp.30038 if ( 007 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_23:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e008 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e008’: No such file or directory + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.30105 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 set line1 = `head -1 tmp.$$` head -1 tmp.30105 rm -f tmp.30105 if ( 008 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_23:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e009 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e009’: No such file or directory + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.30173 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 set line1 = `head -1 tmp.$$` head -1 tmp.30173 rm -f tmp.30173 if ( 009 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_23:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e010 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e010’: No such file or directory + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.30240 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 set line1 = `head -1 tmp.$$` head -1 tmp.30240 rm -f tmp.30240 if ( 010 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_23:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_23:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01_2015-06-10_23:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfbdy_d01_2015-06-10_23:00:00 wrfbdy_d01_2015-06-10_23:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_23:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfinput_d02_2015-06-10_23:00:00 wrfinput_d02_2015-06-10_23:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_23:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/real/wrfinput_d03_2015-06-10_23:00:00 wrfinput_d03_2015-06-10_23:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_23:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_23:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e001 wrfinput_d01_2015-06-10_23:00:00.e001 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e001 wrfbdy_d01_2015-06-10_23:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_23:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e001 wrfinput_d02_2015-06-10_23:00:00.e001 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_23:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e001 wrfinput_d03_2015-06-10_23:00:00.e001 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_23:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_23:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e002 wrfinput_d01_2015-06-10_23:00:00.e002 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e002 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e002 wrfbdy_d01_2015-06-10_23:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_23:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e002 wrfinput_d02_2015-06-10_23:00:00.e002 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e002 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_23:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e002 wrfinput_d03_2015-06-10_23:00:00.e002 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e002 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_23:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_23:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e003 wrfinput_d01_2015-06-10_23:00:00.e003 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e003 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e003 wrfbdy_d01_2015-06-10_23:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_23:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e003 wrfinput_d02_2015-06-10_23:00:00.e003 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e003 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_23:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e003 wrfinput_d03_2015-06-10_23:00:00.e003 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e003 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_23:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_23:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e004 wrfinput_d01_2015-06-10_23:00:00.e004 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e004 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e004 wrfbdy_d01_2015-06-10_23:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_23:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e004 wrfinput_d02_2015-06-10_23:00:00.e004 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e004 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_23:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e004 wrfinput_d03_2015-06-10_23:00:00.e004 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e004 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_23:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_23:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e005 wrfinput_d01_2015-06-10_23:00:00.e005 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e005 wrfbdy_d01_2015-06-10_23:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_23:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e005 wrfinput_d02_2015-06-10_23:00:00.e005 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_23:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e005 wrfinput_d03_2015-06-10_23:00:00.e005 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_23:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_23:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e006 wrfinput_d01_2015-06-10_23:00:00.e006 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e006 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e006 wrfbdy_d01_2015-06-10_23:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_23:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e006 wrfinput_d02_2015-06-10_23:00:00.e006 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e006 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_23:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e006 wrfinput_d03_2015-06-10_23:00:00.e006 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e006 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_23:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_23:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e007 wrfinput_d01_2015-06-10_23:00:00.e007 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e007 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e007 wrfbdy_d01_2015-06-10_23:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_23:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e007 wrfinput_d02_2015-06-10_23:00:00.e007 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e007 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_23:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e007 wrfinput_d03_2015-06-10_23:00:00.e007 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e007 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_23:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_23:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e008 wrfinput_d01_2015-06-10_23:00:00.e008 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e008 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e008 wrfbdy_d01_2015-06-10_23:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_23:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e008 wrfinput_d02_2015-06-10_23:00:00.e008 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e008 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_23:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e008 wrfinput_d03_2015-06-10_23:00:00.e008 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e008 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_23:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_23:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e009 wrfinput_d01_2015-06-10_23:00:00.e009 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e009 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e009 wrfbdy_d01_2015-06-10_23:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_23:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e009 wrfinput_d02_2015-06-10_23:00:00.e009 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e009 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_23:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e009 wrfinput_d03_2015-06-10_23:00:00.e009 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e009 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_23:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_23:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e010 wrfinput_d01_2015-06-10_23:00:00.e010 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d01_2015-06-10_23:00:00.e010 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_bc/wrfbdy_d01_2015-06-10_23:00:00.e010 wrfbdy_d01_2015-06-10_23:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_23:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e010 wrfinput_d02_2015-06-10_23:00:00.e010 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d02_2015-06-10_23:00:00.e010 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_23:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e010 wrfinput_d03_2015-06-10_23:00:00.e010 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_met_ic/wrfinput_d03_2015-06-10_23:00:00.e010 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061023 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + LE_DATE=2015061100 + export LE_DATE + [[ 2015061023 -le 2015061100 ]] + echo 2015061023 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061023 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_23:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_23:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_23:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_23:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-10_23:00:00 wrfbiochemi_d01_2015-06-10_23:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_23:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_23:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_23:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30594 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_20628.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150658 + WRFCHEMI=wrfchemi_d02_2015-06-10_23:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_23:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_23:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_23:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_23:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-10_23:00:00 wrfchemi_d02_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-10_23:00:00 wrffirechemi_d02_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-10_23:00:00 wrfbiochemi_d02_2015-06-10_23:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_23:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_23:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_23:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30677 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_27995.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150659 + WRFCHEMI=wrfchemi_d03_2015-06-10_23:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_23:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_23:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_23:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_23:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-10_23:00:00 wrfchemi_d03_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-10_23:00:00 wrffirechemi_d03_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-10_23:00:00 wrfbiochemi_d03_2015-06-10_23:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_23:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_23:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_23:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30741 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_20774.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150660 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061023 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_00:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_00:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_00:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_23:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_23:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-11_00:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_00:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_00:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31100 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_22375.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150661 + WRFCHEMI=wrfchemi_d02_2015-06-11_00:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-11_00:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-11_00:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_23:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_23:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-11_00:00:00', wrffirechemi='wrffirechemi_d02_2015-06-11_00:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-11_00:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31164 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_18624.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150662 + WRFCHEMI=wrfchemi_d03_2015-06-11_00:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-11_00:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-11_00:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_23:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_23:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-11_00:00:00', wrffirechemi='wrffirechemi_d03_2015-06-11_00:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-11_00:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31237 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_27874.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150663 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_23:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_23:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_23:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 23 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=23 + export L_HH + D_DATE=2015061023 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=23 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=23 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=22 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=23 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061023.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061023.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 23 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=23 + export L_HH + D_DATE=2015061023 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=23 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=23 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=22 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=23 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061023.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061023.out + rm tolnet_obs_seq + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/prepbufr_met_obs/obs_seq_prep_2015061023.out ]] + [[ -n false ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/prepbufr_met_obs/obs_seq_prep_2015061023.out ./obs_seq_MET_2015061023.out + FILE_LIST[1]=obs_seq_MET_2015061023.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/airnow_o3_obs/obs_seq_airnow_o3_2015061023.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/airnow_o3_obs/obs_seq_airnow_o3_2015061023.out ./obs_seq_AIR_O3_2015061023.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061023.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/tolnet_o3_obs/obs_seq_tolnet_o3_2015061023.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/tolnet_o3_obs/obs_seq_tolnet_o3_2015061023.out ./obs_seq_TOL_O3_2015061023.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061023.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061023.out\',\'obs_seq_AIR_O3_2015061023.out\',\'obs_seq_TOL_O3_2015061023.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=81000 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=84600 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 81000, last_obs_days = 151370, last_obs_seconds = 84600, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 14 11 49 25 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=81000 which is Gregorian day: 2015 Jun 10 22:30:00 Excluding observations after: day=151370, sec=84600 which is Gregorian day: 2015 Jun 10 23:30:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061023.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061023.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061023.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 14452 Number of obs really inserted : 14452 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061023.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 14452 Number of obs to be inserted : 957 Number of obs really inserted : 957 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 15409 Actual number of obs in the new seq file : 15409 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=81061 Gregorian day: 2015 Jun 10 22:31:01 Last obs time: day=151370, sec=84600 Gregorian day: 2015 Jun 10 23:30:00 Number of obs processed : 15409 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 123 obs RADIOSONDE_V_WIND_COMPONENT 123 obs RADIOSONDE_TEMPERATURE 136 obs RADIOSONDE_SPECIFIC_HUMIDITY 135 obs AIRCRAFT_U_WIND_COMPONENT 3 obs AIRCRAFT_V_WIND_COMPONENT 3 obs AIRCRAFT_TEMPERATURE 26 obs MARINE_SFC_U_WIND_COMPONENT 565 obs MARINE_SFC_V_WIND_COMPONENT 565 obs MARINE_SFC_TEMPERATURE 619 obs MARINE_SFC_SPECIFIC_HUMIDITY 158 obs LAND_SFC_U_WIND_COMPONENT 31 obs LAND_SFC_V_WIND_COMPONENT 31 obs LAND_SFC_TEMPERATURE 31 obs LAND_SFC_SPECIFIC_HUMIDITY 24 obs SAT_U_WIND_COMPONENT 5593 obs SAT_V_WIND_COMPONENT 5593 obs RADIOSONDE_SURFACE_ALTIMETER 2 obs MARINE_SFC_ALTIMETER 660 obs LAND_SFC_ALTIMETER 31 obs AIRNOW_O3 957 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 14 11 49 26 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061023.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_23:00:00.e001 wrfinput_d01 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_23:00:00.e001’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_23:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_23:00:00.e001 wrfinput_d02 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_23:00:00.e001’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_23:00:00.e001 wrfbiochemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_23:00:00.e001 wrffirechemi_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_23:00:00.e001 wrfchemi_d02 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81000, last_obs_days = 151370, last_obs_seconds = 84600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 23, 0, 0, last_bin_center = 2015, 6, 10, 23, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 81000, last_obs_days = 151370, last_obs_seconds = 84600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 81000, last_obs_days = 151370, last_obs_seconds = 84600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/combine_obs/obs_seq_comb_2015061023.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 15372_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 82800 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150674 + mv obs_seq.new obs_seq_comb_filtered_2015061023.out mv: cannot stat ‘obs_seq.new’: No such file or directory + false + false + false + false + false + false + false + false + false + CYCLE_DATE=2015061100 + export CYCLE_DATE + [[ 2015061100 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061100 + export DATE + cut -c1-4 + echo 2015061100 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061100 + YY=15 + export YY + cut -c5-6 + echo 2015061100 + MM=06 + export MM + cut -c7-8 + echo 2015061100 + DD=11 + export DD + cut -c9-10 + echo 2015061100 + HH=00 + export HH + DATE_SHORT=15061100 + export DATE_SHORT + FILE_DATE=2015-06-11_00:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 -1 + 2> /dev/null + PAST_DATE=2015061023 + export PAST_DATE + cut -c1-4 + echo 2015061023 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061023 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061023 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061023 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061023 + PAST_HH=23 + export PAST_HH + PAST_FILE_DATE=2015-06-10_23:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + NEXT_DATE=2015061101 + export NEXT_DATE + cut -c1-4 + echo 2015061101 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061101 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061101 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061101 + NEXT_DD=11 + export NEXT_DD + cut -c9-10 + echo 2015061101 + NEXT_HH=01 + export NEXT_HH + NEXT_FILE_DATE=2015-06-11_01:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=11 + export DT_DD + DT_HH=00 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 11 + 0 )) + (( DT_HH = 00 + 0 )) + [[ 00 -eq 0 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 -1 + 2> /dev/null + TMP_DATE=2015061023 + export TMP_DATE + cut -c1-4 + echo 2015061023 + TMP_YYYY=2015 + export TMP_YYYY + cut -c3-4 + echo 2015061023 + TMP_YY=15 + export TMP_YY + cut -c5-6 + echo 2015061023 + TMP_MM=06 + export TMP_MM + cut -c7-8 + echo 2015061023 + TMP_DD=10 + export TMP_DD + cut -c9-10 + echo 2015061023 + TMP_HH=23 + export TMP_HH + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=24 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 24 + 0 )) + D_DATE=2015061024 + export D_DATE + echo 2015061100 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151371 0 + DAY_GREG=151371 + export DAY_GREG + SEC_GREG=0 + export SEC_GREG + echo 2015061101 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151371 3600 + NEXT_DAY_GREG=151371 + export NEXT_DAY_GREG + NEXT_SEC_GREG=3600 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 -30m + 2> /dev/null + ASIM_MIN_DATE=201506102330 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506102330 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506102330 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506102330 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506102330 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506102330 + ASIM_MIN_HH=23 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +30m + 2> /dev/null + ASIM_MAX_DATE=201506110030 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506110030 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506110030 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506110030 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506110030 + ASIM_MAX_DD=11 + export ASIM_MAX_DD + cut -c9-10 + echo 201506110030 + ASIM_MAX_HH=00 + export ASIM_MAX_HH + echo 201506102330 201506102330 + echo 201506102330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 84600 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=84600 + export ASIM_MIN_SEC_GREG + echo 201506110030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151371 1800 + ASIM_MAX_DAY_GREG=151371 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=1800 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=false + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=false + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=false + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061100 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=false + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=false + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061100 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + END_DATE=2015061101 + export END_DATE + cut -c1-4 + echo 2015061100 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061100 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061100 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061100 + START_DAY=11 + export START_DAY + cut -c9-10 + echo 2015061100 + START_HOUR=00 + export START_HOUR + START_FILE_DATE=2015-06-11_00:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061101 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061101 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061101 + END_DAY=11 + export END_DAY + cut -c9-10 + echo 2015061101 + END_HOUR=01 + export END_HOUR + END_FILE_DATE=2015-06-11_01:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061023/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=11,11,11 + export NL_START_DAY + NL_START_HOUR=00,00,00 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=11,11,11 + export NL_END_DAY + NL_END_HOUR=01,01,01 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_23:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-11_00:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506102330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 84600 + (( temp[1]=84600+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=84601 + export NL_FIRST_OBS_SECONDS + echo 201506110030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151371 1800 + NL_LAST_OBS_DAYS=151371 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=1800 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061100 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=11 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=0 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=11 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=0 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151371 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=3600 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 -30m + 2> /dev/null + ASIM_DATE_MIN=201506102330 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +30m + 2> /dev/null + ASIM_DATE_MAX=201506110030 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506102330 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506102330 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506102330 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506102330 + ASIM_MN_HH=23 + export ASIM_MN_HH + cut -c1-4 + echo 201506110030 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506110030 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506110030 + ASIM_MX_DD=11 + export ASIM_MX_DD + cut -c9-10 + echo 201506110030 + ASIM_MX_HH=00 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-11 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + E_DATE=2015061101 + export E_DATE + cut -c1-4 + echo 2015061101 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061101 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061101 + E_DD=11 + export E_DD + cut -c9-10 + echo 2015061101 + E_HH=01 + export E_HH + FIRE_END_DATE=2015-06-11 + export FIRE_END_DATE + [[ false == true ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061100 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_END_DATE=2015061101 + export L_END_DATE + cut -c1-4 + echo 2015061100 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061100 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061100 + L_START_DAY=11 + export L_START_DAY + cut -c9-10 + echo 2015061100 + L_START_HOUR=00 + export L_START_HOUR + cut -c1-4 + echo 2015061101 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061101 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061101 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061101 + L_END_HOUR=01 + export L_END_HOUR + cut -c1-4 + echo 2015061100 + cut -c1-4 + echo 2015061100 + cut -c1-4 + echo 2015061100 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061100 + cut -c5-6 + echo 2015061100 + cut -c5-6 + echo 2015061100 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061100 + cut -c7-8 + echo 2015061100 + cut -c7-8 + echo 2015061100 + NL_START_DAY=11,11,11 + export NL_START_DAY + cut -c9-10 + echo 2015061100 + cut -c9-10 + echo 2015061100 + cut -c9-10 + echo 2015061100 + NL_START_HOUR=00,00,00 + export NL_START_HOUR + cut -c1-4 + echo 2015061101 + cut -c1-4 + echo 2015061101 + cut -c1-4 + echo 2015061101 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061101 + cut -c5-6 + echo 2015061101 + cut -c5-6 + echo 2015061101 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061101 + cut -c7-8 + echo 2015061101 + cut -c7-8 + echo 2015061101 + NL_END_DAY=11,11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061101 + cut -c9-10 + echo 2015061101 + cut -c9-10 + echo 2015061101 + NL_END_HOUR=01,01,01 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-11_00:00:00\',\'2015-06-11_00:00:00\',\'2015-06-11_00:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_01:00:00\',\'2015-06-11_01:00:00\',\'2015-06-11_01:00:00\'' + export NL_END_DATE + P_DATE=2015061100 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + P_END_DATE=2015061101 + export P_END_DATE + [[ 2015061100 -le 2015061101 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-11_00:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_23:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-11_00:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=516 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25307.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150675 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=529 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16646.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150676 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=543 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6591.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150677 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=570 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5867.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150678 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=584 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14176.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150679 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=597 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21551.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150680 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=624 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17975.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150681 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=640 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18887.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150682 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=653 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2597.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150683 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=681 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_443.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150684 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=694 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7994.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150685 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=707 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24006.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150686 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=736 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24676.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150687 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=749 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_791.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150688 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=762 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18271.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150689 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=792 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9124.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150690 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=805 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21404.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150691 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=819 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4460.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150692 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=847 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4158.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150693 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=860 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21588.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150694 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=873 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14582.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150695 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=901 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30258.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150696 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=915 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9106.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150697 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=929 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28240.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150698 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=956 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16213.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150699 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=969 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29817.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150700 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=983 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10939.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150701 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1011 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25624.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150702 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1024 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9477.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150703 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_23:30:00', / &wrfvar22 time_window_max = '2015-06-11_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1038 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30846.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150704 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + sleep 45 + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e001 cp: cannot stat ‘wrfda_cr_1/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_1/wrfvar_output ]] + sleep 45 + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e001 cp: cannot stat ‘wrfda_mr_1/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_1/wrfvar_output ]] + sleep 45 + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e001 cp: cannot stat ‘wrfda_fr_1/wrfvar_output’: No such file or directory + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + sleep 45 + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e002 cp: cannot stat ‘wrfda_cr_2/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_2/wrfvar_output ]] + sleep 45 + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e002 cp: cannot stat ‘wrfda_mr_2/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_2/wrfvar_output ]] + sleep 45 + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e002 cp: cannot stat ‘wrfda_fr_2/wrfvar_output’: No such file or directory + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + sleep 45 + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e003 cp: cannot stat ‘wrfda_cr_3/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_3/wrfvar_output ]] + sleep 45 + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e003 cp: cannot stat ‘wrfda_mr_3/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_3/wrfvar_output ]] + sleep 45 + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e003 cp: cannot stat ‘wrfda_fr_3/wrfvar_output’: No such file or directory + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + sleep 45 + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e004 cp: cannot stat ‘wrfda_cr_4/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_4/wrfvar_output ]] + sleep 45 + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e004 cp: cannot stat ‘wrfda_mr_4/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_4/wrfvar_output ]] + sleep 45 + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e004 cp: cannot stat ‘wrfda_fr_4/wrfvar_output’: No such file or directory + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + sleep 45 + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e005 cp: cannot stat ‘wrfda_cr_5/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_5/wrfvar_output ]] + sleep 45 + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e005 cp: cannot stat ‘wrfda_mr_5/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_5/wrfvar_output ]] + sleep 45 + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e005 cp: cannot stat ‘wrfda_fr_5/wrfvar_output’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + sleep 45 + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e006 cp: cannot stat ‘wrfda_cr_6/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_6/wrfvar_output ]] + sleep 45 + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e006 cp: cannot stat ‘wrfda_mr_6/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_6/wrfvar_output ]] + sleep 45 + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e006 cp: cannot stat ‘wrfda_fr_6/wrfvar_output’: No such file or directory + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + sleep 45 + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e007 cp: cannot stat ‘wrfda_cr_7/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_7/wrfvar_output ]] + sleep 45 + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e007 cp: cannot stat ‘wrfda_mr_7/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-11_00:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-11_00:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + P_DATE=2015061101 + export P_DATE + [[ 2015061101 -le 2015061101 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_01:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-11_01:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-11_00:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-11_01:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5358 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6785.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150712 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5372 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3737.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150713 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5386 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32765.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150714 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5414 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6239.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150715 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5427 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11913.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150716 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5442 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5348.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150717 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5469 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25294.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150718 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5483 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21263.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150719 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5496 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_603.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150720 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5523 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3734.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150721 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5537 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24099.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150722 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5551 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15309.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150723 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5578 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31438.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150724 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5591 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3699.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150725 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5605 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4310.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150726 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5632 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22751.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150727 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5646 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4188.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150728 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5659 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6544.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150729 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5687 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15518.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150730 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5700 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2399.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150731 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14582.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5714 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23236.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150732 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30258.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5741 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1439.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150733 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9106.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5756 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10710.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150734 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28240.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5769 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22797.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150735 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16213.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5797 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4950.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150736 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29817.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5811 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13520.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150737 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10939.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5825 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31453.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150738 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 23949_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25624.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=23949_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5853 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17867.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150739 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 23949_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9477.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5867 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16820.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150740 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 23949_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30846.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-11_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:30:00', / &wrfvar22 time_window_max = '2015-06-11_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 11,11,11, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 11,11,11, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-11_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=23949 + JOBRND=23949_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=23949_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5880 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18139.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150741 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-11_01:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-11_01:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-11_01:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-11_01:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-11_01:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-11_01:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-11_01:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-11_01:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-11_01:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-11_01:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-11_01:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-11_01:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-11_01:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-11_01:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-11_01:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-11_01:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-11_01:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-11_01:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-11_01:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-11_01:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-11_01:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-11_01:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-11_01:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-11_01:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-11_01:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-11_01:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-11_01:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-11_01:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-11_01:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-11_01:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 1 + 2> /dev/null + P_DATE=2015061102 + export P_DATE + [[ 2015061102 -le 2015061101 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_END_DATE=2015061101 + export L_END_DATE + TRANDOM=23949 + [[ 2015061100 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + NEXT_L_DATE=2015061101 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_01:00:00.e001 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8397 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7736.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150831 + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_END_DATE=2015061101 + export L_END_DATE + TRANDOM=23949 + [[ 2015061100 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + NEXT_L_DATE=2015061101 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_01:00:00.e002 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8637 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16207.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150832 + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_END_DATE=2015061101 + export L_END_DATE + TRANDOM=23949 + [[ 2015061100 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + NEXT_L_DATE=2015061101 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_01:00:00.e003 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9009 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7971.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150833 + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_END_DATE=2015061101 + export L_END_DATE + TRANDOM=23949 + [[ 2015061100 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + NEXT_L_DATE=2015061101 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_01:00:00.e004 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9249 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_17324.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150834 + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_END_DATE=2015061101 + export L_END_DATE + TRANDOM=23949 + [[ 2015061100 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + NEXT_L_DATE=2015061101 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_01:00:00.e005 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9497 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_14876.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150835 + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_END_DATE=2015061101 + export L_END_DATE + TRANDOM=23949 + [[ 2015061100 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + NEXT_L_DATE=2015061101 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_01:00:00.e006 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9746 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32202.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150836 + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_END_DATE=2015061101 + export L_END_DATE + TRANDOM=23949 + [[ 2015061100 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + NEXT_L_DATE=2015061101 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_01:00:00.e007 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10118 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6547.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150837 + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_END_DATE=2015061101 + export L_END_DATE + TRANDOM=23949 + [[ 2015061100 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + NEXT_L_DATE=2015061101 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_01:00:00.e008 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10359 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_10768.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150838 + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_END_DATE=2015061101 + export L_END_DATE + TRANDOM=23949 + [[ 2015061100 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + NEXT_L_DATE=2015061101 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_01:00:00.e009 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10606 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_10521.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150839 + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061023.out','obs_seq_AIR_O3_2015061023.out','obs_seq_TOL_O3_2015061023.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 84601, last_obs_days = 151371, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_END_DATE=2015061101 + export L_END_DATE + TRANDOM=23949 + [[ 2015061100 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + NEXT_L_DATE=2015061101 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_01:00:00.e010 wrfinput_next + JOBRND=23949_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 23949_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=23949_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10854 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 23949_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 23949_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27980.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150840 + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -lt 2015061101 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 23949 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfinput_d02_2015-06-11_00:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfinput_d03_2015-06-11_00:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfinput_d02_2015-06-11_00:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfinput_d03_2015-06-11_00:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + LE_DATE=2015061101 + export LE_DATE + [[ 2015061100 -le 2015061101 ]] + echo 2015061100 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-11_00:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_00:00:00 + chmod a+rwx wrfchemi_d03_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061101 ]] + cut -c1-4 + echo 2015061101 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061101 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061101 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061101 + L_HH=01 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_01:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_01:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-11_01:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_01:00:00 + chmod a+rwx wrfchemi_d03_2015-06-11_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 1 + 2> /dev/null + L_DATE=2015061102 + export L_DATE + [[ 2015061102 -le 2015061101 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061100 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150841 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=11 + export DAY + HOUR=00 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-11_00:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-11_00:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfinput_d01_2015-06-11_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 ./. + mv wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e000 + mv wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_d01_2015-06-11_00:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11187 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-11_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.11187 rm -f tmp.11187 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e000 set files = ( wrfinput_d01_2015-06-11_00:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11266 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.11266 rm -f tmp.11266 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e000 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.11266 rm -f tmp.11266 if ( wrfinput_d01_2015-06-11_00:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00.e000 echo wrfinput_d01_2015-06-11_00:00:00.e000 wrfinput_d01_2015-06-11_00:00:00.e000 ln -s wrfinput_d01_2015-06-11_00:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-11_00:00:00.e000 wrfinput_d01_2015-06-11_00:00:00 + mv wrfbdy_d01_2015-06-11_00:00:00.e000 wrfbdy_d01_2015-06-11_00:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=11 + export DAY + HOUR=00 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e001 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e001’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11356 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 set line1 = `head -1 tmp.$$` head -1 tmp.11356 rm -f tmp.11356 if ( 001 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11419 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.11419 rm -f tmp.11419 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e001 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.11419 rm -f tmp.11419 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e002 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e002’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11504 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 set line1 = `head -1 tmp.$$` head -1 tmp.11504 rm -f tmp.11504 if ( 002 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11568 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.11568 rm -f tmp.11568 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e002 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.11568 rm -f tmp.11568 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e003 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e003’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11652 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 set line1 = `head -1 tmp.$$` head -1 tmp.11652 rm -f tmp.11652 if ( 003 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11715 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.11715 rm -f tmp.11715 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e003 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.11715 rm -f tmp.11715 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e004 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e004’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11803 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 set line1 = `head -1 tmp.$$` head -1 tmp.11803 rm -f tmp.11803 if ( 004 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11867 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.11867 rm -f tmp.11867 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e004 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.11867 rm -f tmp.11867 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e005 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e005’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11951 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 set line1 = `head -1 tmp.$$` head -1 tmp.11951 rm -f tmp.11951 if ( 005 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12015 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.12015 rm -f tmp.12015 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e005 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.12015 rm -f tmp.12015 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e006 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e006’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12099 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 set line1 = `head -1 tmp.$$` head -1 tmp.12099 rm -f tmp.12099 if ( 006 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12163 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.12163 rm -f tmp.12163 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e006 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.12163 rm -f tmp.12163 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e007 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e007’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12247 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 set line1 = `head -1 tmp.$$` head -1 tmp.12247 rm -f tmp.12247 if ( 007 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12311 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.12311 rm -f tmp.12311 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e007 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 set line1 = `head -1 tmp.$$` head -1 tmp.12311 rm -f tmp.12311 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12395 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-11_00:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.12395 rm -f tmp.12395 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e008 set files = ( wrfinput_d01_2015-06-11_00:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12471 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.12471 rm -f tmp.12471 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e008 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.12471 rm -f tmp.12471 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e008 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e008 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12555 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-11_00:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.12555 rm -f tmp.12555 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e009 set files = ( wrfinput_d01_2015-06-11_00:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12756 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.12756 rm -f tmp.12756 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e009 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.12756 rm -f tmp.12756 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12842 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-11_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.12842 rm -f tmp.12842 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e010 set files = ( wrfinput_d01_2015-06-11_00:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12920 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.12920 rm -f tmp.12920 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e010 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_d01_2015-06-11_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.12920 rm -f tmp.12920 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_d01_2015-06-11_00:00:00.e010 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_d01_2015-06-11_00:00:00.e010 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_d01_2015-06-11_00:00:00.e010 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150842 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=11 + export DAY + HOUR=00 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-11_00:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfinput_d02_2015-06-11_00:00:00 ./. + mv wrfinput_d02_2015-06-11_00:00:00 wrfinput_d02_2015-06-11_00:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13060 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-11_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.13060 rm -f tmp.13060 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-11_00:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-11_00:00:00.e000 set files = ( wrfinput_d02_2015-06-11_00:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-11_00:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-11_00:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-11_00:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-11_00:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-11_00:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-11_00:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-11_00:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-11_00:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d02 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d02_2015-06-11_00:00:00.e000 wrfinput_d02_2015-06-11_00:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=11 + export DAY + HOUR=00 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-11_00:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e001 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e001’: No such file or directory + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13150 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 set line1 = `head -1 tmp.$$` head -1 tmp.13150 rm -f tmp.13150 if ( 001 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-11_00:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e002 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e002’: No such file or directory + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13218 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 set line1 = `head -1 tmp.$$` head -1 tmp.13218 rm -f tmp.13218 if ( 002 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-11_00:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e003 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e003’: No such file or directory + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13289 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 set line1 = `head -1 tmp.$$` head -1 tmp.13289 rm -f tmp.13289 if ( 003 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-11_00:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e004 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e004’: No such file or directory + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13357 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 set line1 = `head -1 tmp.$$` head -1 tmp.13357 rm -f tmp.13357 if ( 004 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-11_00:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e005 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e005’: No such file or directory + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13424 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 set line1 = `head -1 tmp.$$` head -1 tmp.13424 rm -f tmp.13424 if ( 005 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-11_00:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e006 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e006’: No such file or directory + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13492 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 set line1 = `head -1 tmp.$$` head -1 tmp.13492 rm -f tmp.13492 if ( 006 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-11_00:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e007 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e007’: No such file or directory + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13559 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 set line1 = `head -1 tmp.$$` head -1 tmp.13559 rm -f tmp.13559 if ( 007 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-11_00:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13627 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-11_00:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.13627 rm -f tmp.13627 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-11_00:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-11_00:00:00.e008 set files = ( wrfinput_d02_2015-06-11_00:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-11_00:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-11_00:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-11_00:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-11_00:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-11_00:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-11_00:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-11_00:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-11_00:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-11_00:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-11_00:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-11_00:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13702 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-11_00:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.13702 rm -f tmp.13702 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-11_00:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-11_00:00:00.e009 set files = ( wrfinput_d02_2015-06-11_00:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-11_00:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-11_00:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-11_00:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-11_00:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-11_00:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-11_00:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-11_00:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-11_00:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-11_00:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-11_00:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-11_00:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.13774 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-11_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.13774 rm -f tmp.13774 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-11_00:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-11_00:00:00.e010 set files = ( wrfinput_d02_2015-06-11_00:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-11_00:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-11_00:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-11_00:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-11_00:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-11_00:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-11_00:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-11_00:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-11_00:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-11_00:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-11_00:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=23949 + JOBRND=15372_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 15372_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150843 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=11 + export DAY + HOUR=00 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-11_00:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfinput_d03_2015-06-11_00:00:00 ./. + mv wrfinput_d03_2015-06-11_00:00:00 wrfinput_d03_2015-06-11_00:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14008 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-11_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.14008 rm -f tmp.14008 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-11_00:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-11_00:00:00.e000 set files = ( wrfinput_d03_2015-06-11_00:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-11_00:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-11_00:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-11_00:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d03 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d03_2015-06-11_00:00:00.e000 wrfinput_d03_2015-06-11_00:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=11 + export DAY + HOUR=00 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-11_00:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e001 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e001’: No such file or directory + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14095 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 set line1 = `head -1 tmp.$$` head -1 tmp.14095 rm -f tmp.14095 if ( 001 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-11_00:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e002 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e002’: No such file or directory + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14162 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 set line1 = `head -1 tmp.$$` head -1 tmp.14162 rm -f tmp.14162 if ( 002 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-11_00:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e003 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e003’: No such file or directory + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14230 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 set line1 = `head -1 tmp.$$` head -1 tmp.14230 rm -f tmp.14230 if ( 003 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-11_00:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e004 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e004’: No such file or directory + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14298 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 set line1 = `head -1 tmp.$$` head -1 tmp.14298 rm -f tmp.14298 if ( 004 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-11_00:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e005 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e005’: No such file or directory + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14365 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 set line1 = `head -1 tmp.$$` head -1 tmp.14365 rm -f tmp.14365 if ( 005 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-11_00:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e006 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e006’: No such file or directory + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14433 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 set line1 = `head -1 tmp.$$` head -1 tmp.14433 rm -f tmp.14433 if ( 006 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-11_00:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14501 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-11_00:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.14501 rm -f tmp.14501 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-11_00:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-11_00:00:00.e007 set files = ( wrfinput_d03_2015-06-11_00:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-11_00:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-11_00:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-11_00:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-11_00:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14577 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-11_00:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.14577 rm -f tmp.14577 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-11_00:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-11_00:00:00.e008 set files = ( wrfinput_d03_2015-06-11_00:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-11_00:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-11_00:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-11_00:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-11_00:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14649 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-11_00:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.14649 rm -f tmp.14649 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-11_00:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-11_00:00:00.e009 set files = ( wrfinput_d03_2015-06-11_00:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-11_00:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-11_00:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-11_00:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-11_00:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14721 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-11_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.14721 rm -f tmp.14721 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-11_00:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-11_00:00:00.e010 set files = ( wrfinput_d03_2015-06-11_00:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-11_00:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-11_00:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-11_00:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-11_00:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-11_00:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_d01_2015-06-11_00:00:00 + WRFINPEN=wrfinput_d02_2015-06-11_00:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfinput_d02_2015-06-11_00:00:00 wrfinput_d02_2015-06-11_00:00:00 + WRFINPEN=wrfinput_d03_2015-06-11_00:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/real/wrfinput_d03_2015-06-11_00:00:00 wrfinput_d03_2015-06-11_00:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e001 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e001 wrfbdy_d01_2015-06-11_00:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-11_00:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e001 wrfinput_d02_2015-06-11_00:00:00.e001 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-11_00:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e001 wrfinput_d03_2015-06-11_00:00:00.e001 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e002 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e002 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e002 wrfbdy_d01_2015-06-11_00:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-11_00:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e002 wrfinput_d02_2015-06-11_00:00:00.e002 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e002 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-11_00:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e002 wrfinput_d03_2015-06-11_00:00:00.e002 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e002 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e003 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e003 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e003 wrfbdy_d01_2015-06-11_00:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-11_00:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e003 wrfinput_d02_2015-06-11_00:00:00.e003 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e003 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-11_00:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e003 wrfinput_d03_2015-06-11_00:00:00.e003 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e003 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e004 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e004 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e004 wrfbdy_d01_2015-06-11_00:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-11_00:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e004 wrfinput_d02_2015-06-11_00:00:00.e004 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e004 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-11_00:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e004 wrfinput_d03_2015-06-11_00:00:00.e004 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e004 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e005 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e005 wrfbdy_d01_2015-06-11_00:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-11_00:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e005 wrfinput_d02_2015-06-11_00:00:00.e005 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-11_00:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e005 wrfinput_d03_2015-06-11_00:00:00.e005 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e006 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e006 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e006 wrfbdy_d01_2015-06-11_00:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-11_00:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e006 wrfinput_d02_2015-06-11_00:00:00.e006 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e006 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-11_00:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e006 wrfinput_d03_2015-06-11_00:00:00.e006 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e006 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00.e007 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e007 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e007 wrfbdy_d01_2015-06-11_00:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-11_00:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e007 wrfinput_d02_2015-06-11_00:00:00.e007 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e007 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-11_00:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e007 wrfinput_d03_2015-06-11_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e008 wrfbdy_d01_2015-06-11_00:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-11_00:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e008 wrfinput_d02_2015-06-11_00:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-11_00:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e008 wrfinput_d03_2015-06-11_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_d01_2015-06-11_00:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e009 wrfbdy_d01_2015-06-11_00:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-11_00:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e009 wrfinput_d02_2015-06-11_00:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-11_00:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e009 wrfinput_d03_2015-06-11_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e010 wrfinput_d01_2015-06-11_00:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e010 wrfbdy_d01_2015-06-11_00:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-11_00:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d02_2015-06-11_00:00:00.e010 wrfinput_d02_2015-06-11_00:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-11_00:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_met_ic/wrfinput_d03_2015-06-11_00:00:00.e010 wrfinput_d03_2015-06-11_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + LE_DATE=2015061101 + export LE_DATE + [[ 2015061100 -le 2015061101 ]] + echo 2015061100 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061100 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_00:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_00:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_00:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-11_00:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_00:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_00:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15136 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_26554.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150845 + WRFCHEMI=wrfchemi_d02_2015-06-11_00:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-11_00:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-11_00:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-11_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc/wrfinput_d02_2015-06-11_00:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_00:00:00 wrfchemi_d02_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_00:00:00 wrffirechemi_d02_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_00:00:00 wrfbiochemi_d02_2015-06-11_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-11_00:00:00', wrffirechemi='wrffirechemi_d02_2015-06-11_00:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-11_00:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15198 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_25097.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150846 + WRFCHEMI=wrfchemi_d03_2015-06-11_00:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-11_00:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-11_00:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-11_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc/wrfinput_d03_2015-06-11_00:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_00:00:00 wrfchemi_d03_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_00:00:00 wrffirechemi_d03_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_00:00:00 wrfbiochemi_d03_2015-06-11_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-11_00:00:00', wrffirechemi='wrffirechemi_d03_2015-06-11_00:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-11_00:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15400 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_24905.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150847 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061101 ]] + cut -c1-4 + echo 2015061101 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061101 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061101 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061101 + L_HH=01 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061100 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_01:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_01:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_01:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-11_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_01:00:00 wrfbiochemi_d01_2015-06-11_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-11_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_01:00:00 wrfbiochemi_d01_2015-06-11_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-11_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_01:00:00 wrfbiochemi_d01_2015-06-11_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-11_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_01:00:00 wrfbiochemi_d01_2015-06-11_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-11_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_01:00:00 wrfbiochemi_d01_2015-06-11_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-11_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_01:00:00 wrfbiochemi_d01_2015-06-11_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-11_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_01:00:00 wrfbiochemi_d01_2015-06-11_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-11_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_01:00:00 wrfbiochemi_d01_2015-06-11_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-11_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_01:00:00 wrfbiochemi_d01_2015-06-11_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-11_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_01:00:00 wrfbiochemi_d01_2015-06-11_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-11_01:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_01:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_01:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15633 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_28480.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150849 + WRFCHEMI=wrfchemi_d02_2015-06-11_01:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-11_01:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-11_01:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-11_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc/wrfinput_d02_2015-06-11_00:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_01:00:00 wrfchemi_d02_2015-06-11_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_01:00:00 wrffirechemi_d02_2015-06-11_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_01:00:00 wrfbiochemi_d02_2015-06-11_01:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_01:00:00 wrfchemi_d02_2015-06-11_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_01:00:00 wrffirechemi_d02_2015-06-11_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_01:00:00 wrfbiochemi_d02_2015-06-11_01:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_01:00:00 wrfchemi_d02_2015-06-11_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_01:00:00 wrffirechemi_d02_2015-06-11_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_01:00:00 wrfbiochemi_d02_2015-06-11_01:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_01:00:00 wrfchemi_d02_2015-06-11_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_01:00:00 wrffirechemi_d02_2015-06-11_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_01:00:00 wrfbiochemi_d02_2015-06-11_01:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_01:00:00 wrfchemi_d02_2015-06-11_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_01:00:00 wrffirechemi_d02_2015-06-11_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_01:00:00 wrfbiochemi_d02_2015-06-11_01:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_01:00:00 wrfchemi_d02_2015-06-11_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_01:00:00 wrffirechemi_d02_2015-06-11_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_01:00:00 wrfbiochemi_d02_2015-06-11_01:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_01:00:00 wrfchemi_d02_2015-06-11_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_01:00:00 wrffirechemi_d02_2015-06-11_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_01:00:00 wrfbiochemi_d02_2015-06-11_01:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_01:00:00 wrfchemi_d02_2015-06-11_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_01:00:00 wrffirechemi_d02_2015-06-11_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_01:00:00 wrfbiochemi_d02_2015-06-11_01:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_01:00:00 wrfchemi_d02_2015-06-11_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_01:00:00 wrffirechemi_d02_2015-06-11_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_01:00:00 wrfbiochemi_d02_2015-06-11_01:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d02_2015-06-11_01:00:00 wrfchemi_d02_2015-06-11_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d02_2015-06-11_01:00:00 wrffirechemi_d02_2015-06-11_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d02_2015-06-11_01:00:00 wrfbiochemi_d02_2015-06-11_01:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-11_01:00:00', wrffirechemi='wrffirechemi_d02_2015-06-11_01:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-11_01:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15694 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_2135.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150850 + WRFCHEMI=wrfchemi_d03_2015-06-11_01:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-11_01:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-11_01:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-11_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chem_icbc/wrfinput_d03_2015-06-11_00:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_01:00:00 wrfchemi_d03_2015-06-11_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_01:00:00 wrffirechemi_d03_2015-06-11_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_01:00:00 wrfbiochemi_d03_2015-06-11_01:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_01:00:00 wrfchemi_d03_2015-06-11_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_01:00:00 wrffirechemi_d03_2015-06-11_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_01:00:00 wrfbiochemi_d03_2015-06-11_01:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_01:00:00 wrfchemi_d03_2015-06-11_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_01:00:00 wrffirechemi_d03_2015-06-11_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_01:00:00 wrfbiochemi_d03_2015-06-11_01:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_01:00:00 wrfchemi_d03_2015-06-11_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_01:00:00 wrffirechemi_d03_2015-06-11_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_01:00:00 wrfbiochemi_d03_2015-06-11_01:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_01:00:00 wrfchemi_d03_2015-06-11_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_01:00:00 wrffirechemi_d03_2015-06-11_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_01:00:00 wrfbiochemi_d03_2015-06-11_01:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_01:00:00 wrfchemi_d03_2015-06-11_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_01:00:00 wrffirechemi_d03_2015-06-11_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_01:00:00 wrfbiochemi_d03_2015-06-11_01:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_01:00:00 wrfchemi_d03_2015-06-11_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_01:00:00 wrffirechemi_d03_2015-06-11_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_01:00:00 wrfbiochemi_d03_2015-06-11_01:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_01:00:00 wrfchemi_d03_2015-06-11_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_01:00:00 wrffirechemi_d03_2015-06-11_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_01:00:00 wrfbiochemi_d03_2015-06-11_01:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_01:00:00 wrfchemi_d03_2015-06-11_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_01:00:00 wrffirechemi_d03_2015-06-11_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_01:00:00 wrfbiochemi_d03_2015-06-11_01:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_chemi/wrfchemi_d03_2015-06-11_01:00:00 wrfchemi_d03_2015-06-11_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_fire/wrffirechemi_d03_2015-06-11_01:00:00 wrffirechemi_d03_2015-06-11_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d/2015061100/wrfchem_bio/wrfbiochemi_d03_2015-06-11_01:00:00 wrfbiochemi_d03_2015-06-11_01:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-11_01:00:00', wrffirechemi='wrffirechemi_d03_2015-06-11_01:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-11_01:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=23949 + JOBRND=15372_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 15372_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=15372_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15766 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 15372_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 15372_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_8877.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150853